mRNA_Ecto-sp8_S_contig11127.1498.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11127.1498.1
Unique NamemRNA_Ecto-sp8_S_contig11127.1498.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11127.1498.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 627 bits (1616), Expect = 8.530e-223
Identity = 343/359 (95.54%), Postives = 347/359 (96.66%), Query Frame = 1 
Query:    1 ASIFDRIADVVFNEEQKEQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGPAFRAGVQTDDLVIGVGEHTVSSYGTVLAFMNIMGRPIELHFRKSDKGSGDXXXXXXXXPISASHAGSRGXXXXGSAAKPEGFRATKAGGVSKSGPIRGNVEGTRGDSLSRKLKGAAGAKSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFCDLQKQYGR 1077
            ASIFDRIADVVFNEEQK+QDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQG AFRAG+QTDDLVIGVGE+TVSSYGTVLAFMNIMGRPIELHFRKSDKGSGD XXXXXXX ISA H     XXXX SAAKPEGFRATKAGGVSKSGPIRGN+EGTRGDSLSRKLKGAAG KSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGF DLQKQYGR
Sbjct:  165 ASIFDRIADVVFNEEQKKQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELHFRKSDKGSGDGXXXXXXXXISAXHXXXXXXXXXXSAAKPEGFRATKAGGVSKSGPIRGNLEGTRGDSLSRKLKGAAGVKSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLQKQYGR 523
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BLAST of mRNA_Ecto-sp8_S_contig11127.1498.1 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.460e-9
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:   52 EQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDP-DTRDAIVGKIVEQGPAFRAGVQTDDLVIGVGEHTVSS-----------------YGTVLAFMNIMGRPIELHFRKSDKGS 345
            E + VD  A+R  L  EF V F EG++GM+L     DT +  V K+VE+G A   GV+  D+V  VG+   +S                 YGT LAF+NI+GRP+ L F+K + G+
Sbjct: 1207 EDEIVDWSALRRALPKEFSVEFNEGSIGMSLVRTAADTAE--VSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGEDGT 1320
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BLAST of mRNA_Ecto-sp8_S_contig11127.1498.1 vs. uniprot
Match: A0A6U1C867_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C867_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.080e-6
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1 
Query:  658 AGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSR---SSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSF-------ALQFKERSLEMTCDSHAEMRQLVAGF 1050
            A F EK+E+GV V K+ ++G AA RLL L     S+ W  +   +    R     S+      K ++  L  L EV  G+ PDP  P + G+  LR H  +    R         +L F +R++++  +S A+ + L  GF
Sbjct:  167 AEFKEKLENGVQVVKFNRRGQAAFRLLVLKEDGRSLTW-SVPRGTQADGRLGFGQSVRRKFSAKSDSFDLRSLSEVRLGEAPDPAFPGKFGTETLRMHASKYAQIRQMQEHGLCVSLIFPDRTVDLGSNSQAQRQFLTRGF 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11127.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS10_ECTSI8.530e-22395.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTV8_9STRA3.460e-938.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1C867_9STRA4.080e-630.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11127contigEcto-sp8_S_contig11127:2586..6582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score632.5
Seed ortholog evalue1.2e-178
Seed eggNOG ortholog2880.D7FS10
Model size1080
Hectar predicted targeting categoryother localisation
Exons8
EggNOG OGs2E84P@1,2SEN4@2759
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-12_006920.1
Cds size1080
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11127.1498.1prot_Ecto-sp8_S_contig11127.1498.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11127 2586..6582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143195.567668-CDS-Ecto-sp8_S_contig11127:2585..26631681143195.567668-CDS-Ecto-sp8_S_contig11127:2585..2663Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 2586..2663 -
1681143195.5807612-CDS-Ecto-sp8_S_contig11127:3180..33091681143195.5807612-CDS-Ecto-sp8_S_contig11127:3180..3309Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 3181..3309 -
1681143195.5917687-CDS-Ecto-sp8_S_contig11127:3753..39511681143195.5917687-CDS-Ecto-sp8_S_contig11127:3753..3951Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 3754..3951 -
1681143195.6032374-CDS-Ecto-sp8_S_contig11127:4392..45271681143195.6032374-CDS-Ecto-sp8_S_contig11127:4392..4527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 4393..4527 -
1681143195.6147344-CDS-Ecto-sp8_S_contig11127:4912..50661681143195.6147344-CDS-Ecto-sp8_S_contig11127:4912..5066Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 4913..5066 -
1681143195.6254482-CDS-Ecto-sp8_S_contig11127:5485..56581681143195.6254482-CDS-Ecto-sp8_S_contig11127:5485..5658Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 5486..5658 -
1681143195.639116-CDS-Ecto-sp8_S_contig11127:5923..60531681143195.639116-CDS-Ecto-sp8_S_contig11127:5923..6053Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 5924..6053 -
1681143195.6519167-CDS-Ecto-sp8_S_contig11127:6499..65821681143195.6519167-CDS-Ecto-sp8_S_contig11127:6499..6582Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11127 6500..6582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11127.1498.1

>prot_Ecto-sp8_S_contig11127.1498.1 ID=prot_Ecto-sp8_S_contig11127.1498.1|Name=mRNA_Ecto-sp8_S_contig11127.1498.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=360bp
ASIFDRIADVVFNEEQKEQDPVDAIAVRSELEDEFRVSFREGAMGMTLSM
DPDTRDAIVGKIVEQGPAFRAGVQTDDLVIGVGEHTVSSYGTVLAFMNIM
GRPIELHFRKSDKGSGDGGGGSGGGPISASHAGSRGGDGGGSAAKPEGFR
ATKAGGVSKSGPIRGNVEGTRGDSLSRKLKGAAGAKSAGGIAPRSPISPR
SQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDG
VSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDP
TRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGF
CDLQKQYGR*
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mRNA from alignment at Ecto-sp8_S_contig11127:2586..6582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11127.1498.1 ID=mRNA_Ecto-sp8_S_contig11127.1498.1|Name=mRNA_Ecto-sp8_S_contig11127.1498.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3997bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11127:2586..6582- (Ectocarpus species8 EcLAC_412)
GCGTCGATCTTCGATCGGATCGCGGACGTCGTGTTCAACGAGGAGCAGAA
GGAACAAGATCCTGTCGACGCCATCGCCGTCAGGTTGGGTGGTTGGTGTC
GGCCGTGTCGGTTCATTGTCTTAAATTTTACACTGAATCACCCAACGCAC
GCTCTGCCAATGGCGGCTGTAGGGGTTGGAACGGCGAGGGAGGAGGGGGA
TAGAAAGTGTCGAAGCGCAAACCTTGAAAAAATAGAGGTTTAAGCGCCAG
CGTGAGCGAGCTCGTGGTCACGAAAACATGGCTTCTGCTGCGCTTCTTCC
GAACCCGACGTCCGCCCCTCTCCACACAGTCCTCCCACAATGTTGCTTTG
GCGTTTTCTGGGCTACCCAAACGGCAGCTTGGAAGGTGGCAAACGAAACG
GCAAGGAACGGAAAACGTAGACCATGGGATAGGGTAGCCTATGGTCTTCC
CCCCACGTCTCGTTCCTTGCCCTGGCAATACCTCTATACAACATTGTTGT
TTTGCGACGTCGACTTTCTTTGTTGTCAGGAGCGAGCTGGAGGATGAGTT
TCGGGTTTCTTTCCGGGAAGGCGCCATGGGTATGACCTTGTCCATGGATC
CTGACACCAGGGACGCTATCGTCGGGAAGATAGTCGAACAGGGGCCGGCG
TTTCGAGCGGTGAGACATACCACGGAACAGAGGCGGCAGCGTGCCACTTT
CTTCTTGCGACGTACTGCCGGGGAGCGACGGTTCGTCTTGAGGCGCATGG
GGTCATGTTGCAGGCATTGGTTACACATTTGTATGCGTACGGTTCGGGCA
CAAAACCCGCACACGTCGCCCTCTCCACCTATCATCGTCCACCTCCCCCT
CCATGTTCATACATATTGTCCTCAACACCGTCGGTGTATGCGCGGAATTC
ATATGCAAACACACATACGCACAGGGGGTCCAAACGGATGACCTCGTGAT
CGGAGTGGGAGAGCACACCGTCAGCAGCTACGGCACCGTGTTGGCCTTCA
TGAACATCATGGGCCGTCCGATCGAGCTCCACTTCCGAAAATCTGACAAA
GGCAGCGGCGATGGCGGCGGCGGCAGCGGTGGCGGACCGATCTCAGCGTG
AGTAGAGGAGTCGATGTCAAACCTGTTTTTCGTCGGAGGTAGGCAGAGGA
GGAGGGTCGAAGACGGGGTAAACAAAACCCATGTGGGTGCAAAGCCTCGA
ACTTGTTGGCTACAAGAAGACCAACGGGACACAGAGCGTGCACATCTTTG
CTAGGCAGACAACAACCGGGCCATAACACGTCGCCGGAAGGGGGAGCACT
GACAACGACACGTTCGGGTAGCGTATTTTTCCTGCCGATCAGCGTACCCC
GAGGACCGTAAAAGTTCCTCGCGTAAACCGGCCGCGGCACGGCTCATCGC
TATCACACAGCTCACTTCGCTCCTTGTCAATCAAGATCCCTTTTGTCCTT
CACGCTCGCCGGCTATATTCTTGTCCTCGTTCGTTCTGTCACGTGCACAT
CTATCGCTTTTCCCAGCTCACACGCCGGCTCCCGGGGCGGTGACGGGGGC
GGGAGTGCGGCCAAACCGGAGGGCTTCCGCGCGACGAAGGCTGGAGGCGT
ATCAAAATCTGGGCCGATCCGGGGGAATGTCGAGGGCACCCGCGGGGACA
GCTTGTCCAGAAAGCTCAAGGTACATCAGCAGGGCCAGGTGGCCTATGAG
CGACTATCTGTTGCATGAACTAGGAGCAAGTCAAGCGCGTTCGAGCGAAA
CACATAGTGTTGCACATGAAGGTTGCTTCGTGGTTAGCAAATCGGCGTGC
TCACATAGGGACGAGCTTCAGTTTTTACGCCTGTGCGTCCGCATTCGTGG
ACATAAACGAAGGAGTCTGGATGAACGACCCGTCGCGGGCCGGATGCGGC
GGCCTAAGACCGCCCGCGAGCGGCGAAAACGATACCTCTTTCATATCTGG
TTGTTGTCGTCGCGACCTCACGAACCCACGTGCCCCGAAAGCAATGGATC
CGGTCAACAACAACAACAACGCGCGATTTGCTGACATAACACCAACGTAA
AGCAGGGAGCAGCAGGAGCAAAGAGCGCCGGAGGGATTGCGCCCCGTTCC
CCTATCTCTCCGCGGAGCCAGGGCAAGGTGTCCGGGTTTAGCGGGCTGGG
GCGCGAGGTGGCGAGCTCCGACGCTGGCTTCAGCGAAAAGGTTTGTGTGT
GGTACATATGAGTGGCGGGGGGGGGGGGGTGCGGAGATGGGGGCTAGCGC
AGACAGATGCAGACCACCGTTGGTTTCGTCATTTCTCCTTCGCCTACAGC
CCTGCAGCTTGCTACACTCCCAGCTAAAGATCGTGGCGGCTGCCTCGTCC
ACAACGTTCTTGTCCTAGCGTTGTTGAGGGCCCCCCACCCCCCATTCGGT
ACCCTGATCTCTCATCCTCATGCAACAACTGGCAAAGAAGAGAACCTCCG
TGGGCCACGAGCCAAGTACCCAAGCAAGGTGGTACTTTTGTATCTAATCC
AGTACTATGATCCTCGGTACGGAGACGTGATATAGCAGAAAAAAACAAAG
AAAAAGAAAACAGAGAAAAGCCCGAATGGAGAAGAACAAAATTAAAACCT
GGGCATCTTATTGATTGCACCCGACGAGCAGATGGAGCACGGCGTGGTGG
TGACCAAGTACGGCAAGAAGGGCGCGGCGGCTCAGCGGCTGCTCTACCTG
GATGGCGTGTCGATGTCGGTGGCTTGGCGCGACCTCGACGCCCGTTCCCC
GGGGCACAGCCGATCGAGTTCGCTCACCAACATCATCAAGGGGAAGAGGG
AGGCGTTGGCGCTCGCGCACCTCCTCGAGGTCGGTTTTCAAGTCTTGCCT
GGCGCGAGCGTGGGTCCTATGCGGTTGTGTTGATCTCAGGGTGGTCCCTG
ATTGGGATGATGCGACAGGTGTTTTGGTGACCGGGTGCGTTATTATGTAG
CGGGGCCAGAAACGAAATGTACAGCCAACCGTCGAGGAAGAACCACCGCT
TCCACGACAACCACCACCACCACCACCACGGCCACCACCACCGCCGCCAC
AACCAATACTTGTTGAAGGGCTGCGGTGTTACTCCTAGCCCCTGAGCCCC
CCCTCCCCCCCCTTTGCCGCGCACCGGGTCGCTACGATTTGCCGCCTGTA
CCGTTTCGATGATAGATTGGGGTGACGACAACGAAAATTCCGCCAAACAT
CGCTTGCCTCAATCAGGCGTTCGCACCACTCACACCTCTCCCGACGTACG
TACGTGTTTGATGACGAGTGCAGGTTATAGCTGGTGACGACCCTGACCCC
ACGAGACCGTCGGAGAAGGGCTCGGCGATGCTCCGTGAGCACTGCGACGA
GAGCCTTCTAGAGCGAAGCTTCGCCTTGCAGTTCAAAGAGCGATCTCTGG
AGGTGAGAGATGGGACGTACTTACTATGGAGGTGCCCTTGAGCCGGCGCC
CAGGTGCTCTTCGTTTGGGCCGCAGTTCTGCTGTCCGGGGAGGTACTGTT
GAAGCGTAGCTGGATGTTCCTTGGTGGCCTACTGCCAGAAGCATTTCGTT
CGAAAAGCGTATACATGCACCCAACATCGATAGTAGTGTCTTACCGCACG
AGTAGGAAGGGGCCGAAATGGTGTGTTGTGGCAACTACATAGCCCCCGCC
CCCCACCCAATCGCCAATCTTGGAGATCGTGCAATGTTGTGCATACTGTC
GACCGTTTGTCCATTGCCGACACGGACATAAACAAACGTGCGATGTTCAG
CACAACGTCAACGTAACATGTTCAATGCTGTCCGGGACCGTTGTAGCTTA
GGATCGGTCAGCGCCCGCCCGTGTTTGTTACTGAGATTCCTGTCATCAAC
ATCATATCACCGAGCCCGCTTCCACCGCGCCCTAACAACTGGCGCCATGC
CTTCTTTTCTTCATTTCAGATGACCTGCGACAGCCACGCCGAGATGCGCC
AGCTTGTGGCTGGTTTCTGTGACCTCCAGAAGCAATACGGGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11127:2586..6582-

>mRNA_Ecto-sp8_S_contig11127.1498.1 ID=mRNA_Ecto-sp8_S_contig11127.1498.1|Name=mRNA_Ecto-sp8_S_contig11127.1498.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11127:2586..6582- (Ectocarpus species8 EcLAC_412)
GCGTCGATCTTCGATCGGATCGCGGACGTCGTGTTCAACGAGGAGCAGAA
GGAACAAGATCCTGTCGACGCCATCGCCGTCAGGAGCGAGCTGGAGGATG
AGTTTCGGGTTTCTTTCCGGGAAGGCGCCATGGGTATGACCTTGTCCATG
GATCCTGACACCAGGGACGCTATCGTCGGGAAGATAGTCGAACAGGGGCC
GGCGTTTCGAGCGGGGGTCCAAACGGATGACCTCGTGATCGGAGTGGGAG
AGCACACCGTCAGCAGCTACGGCACCGTGTTGGCCTTCATGAACATCATG
GGCCGTCCGATCGAGCTCCACTTCCGAAAATCTGACAAAGGCAGCGGCGA
TGGCGGCGGCGGCAGCGGTGGCGGACCGATCTCAGCCTCACACGCCGGCT
CCCGGGGCGGTGACGGGGGCGGGAGTGCGGCCAAACCGGAGGGCTTCCGC
GCGACGAAGGCTGGAGGCGTATCAAAATCTGGGCCGATCCGGGGGAATGT
CGAGGGCACCCGCGGGGACAGCTTGTCCAGAAAGCTCAAGGGAGCAGCAG
GAGCAAAGAGCGCCGGAGGGATTGCGCCCCGTTCCCCTATCTCTCCGCGG
AGCCAGGGCAAGGTGTCCGGGTTTAGCGGGCTGGGGCGCGAGGTGGCGAG
CTCCGACGCTGGCTTCAGCGAAAAGATGGAGCACGGCGTGGTGGTGACCA
AGTACGGCAAGAAGGGCGCGGCGGCTCAGCGGCTGCTCTACCTGGATGGC
GTGTCGATGTCGGTGGCTTGGCGCGACCTCGACGCCCGTTCCCCGGGGCA
CAGCCGATCGAGTTCGCTCACCAACATCATCAAGGGGAAGAGGGAGGCGT
TGGCGCTCGCGCACCTCCTCGAGGTTATAGCTGGTGACGACCCTGACCCC
ACGAGACCGTCGGAGAAGGGCTCGGCGATGCTCCGTGAGCACTGCGACGA
GAGCCTTCTAGAGCGAAGCTTCGCCTTGCAGTTCAAAGAGCGATCTCTGG
AGATGACCTGCGACAGCCACGCCGAGATGCGCCAGCTTGTGGCTGGTTTC
TGTGACCTCCAGAAGCAATACGGGCGGTGA
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