mRNA_Ecto-sp8_S_contig11116.1483.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11116.1483.1
Unique NamemRNA_Ecto-sp8_S_contig11116.1483.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11116.1483.1 vs. uniprot
Match: D7FPC8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC8_ECTSI)

HSP 1 Score: 834 bits (2154), Expect = 2.000e-300
Identity = 469/491 (95.52%), Postives = 473/491 (96.33%), Query Frame = 1 
Query:    1 QTKNWQGDRGGGVNTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAANEVNNTGFLAGKKGLVGGLLLEAFRASPPRRAVSLGRDPVFLGQSFVNYVSFCGAVEPKHGGRDLDDQRRVLDKAWKTKPKSPRSSQPSPTQVLPKHPASGRSWDSGAGGGGKRGKGPISECPDTEVLPARAPMACEFNKSRTSGGPGQLDHWERIELKRILDGQGGSTPPAKHFLTRKQAFSGIKKMVTQGRRPRIYGIEPQLSSDDDSLNSLSGIGEGGSGSVVAAIPDGSSRTNLDVLFDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDPQADVRVLLRTLEEGVSAPGGVGPLEWDWLSGEEARDRARKMYREASHAQRRMQLMADEEDEAVRQEADQIRSKIAVLTRNAARLEALASASASSDTTGALTPLLFMHSIPTQGH 1473
            +TKNWQGDRGGG NTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAA+E +NTGFLAGKKGLVGGLLLEAFRASPPRRAVSLGRDPVFLGQSFVNYVSFCGAVEPKHGGRDLDDQRRVLDKAWK KPKSPRSSQPSPTQVLPKHPASGRSWDSGA        GPISECPDTEVLPARAPMACEFNKSR SGGPGQLDHWERIELKRILDGQGGSTPPAK FLTRKQAFSGIKKMV QGRRPRIYGIEPQLSSDDDSLNSLSGIGEGGSG VVAAIPDGSSRTNLDVLFDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDPQADVRVLLRTLEEGVSAPGGVGPLEWDWLSGEEARDRARKMYREASHAQRRMQLMADEEDEAVRQEADQIRSKIAVLTRNAARLEALASAS SSDTTGA TP+LFMHS PTQGH
Sbjct:  152 ETKNWQGDRGGGANTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRRILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAADEADNTGFLAGKKGLVGGLLLEAFRASPPRRAVSLGRDPVFLGQSFVNYVSFCGAVEPKHGGRDLDDQRRVLDKAWKAKPKSPRSSQPSPTQVLPKHPASGRSWDSGAXXXXXXXXGPISECPDTEVLPARAPMACEFNKSRNSGGPGQLDHWERIELKRILDGQGGSTPPAKLFLTRKQAFSGIKKMVIQGRRPRIYGIEPQLSSDDDSLNSLSGIGEGGSGKVVAAIPDGSSRTNLDVLFDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDPQADVRVLLRTLEEGVSAPGGVGPLEWDWLSGEEARDRARKMYREASHAQRRMQLMADEEDEAVRQEADQIRSKIAVLTRNAARLEALASASPSSDTTGAPTPMLFMHSTPTQGH 642
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11116.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPC8_ECTSI2.000e-30095.52Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11116contigEcto-sp8_S_contig11116:2190..5972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score838.6
Seed ortholog evalue1.5e-240
Seed eggNOG ortholog2880.D7FPC8
Preferred nameLRRC72
Model size1473
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_003890.1
Cds size1473
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11116.1483.1prot_Ecto-sp8_S_contig11116.1483.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11116 2190..5972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143194.4869213-CDS-Ecto-sp8_S_contig11116:2189..22361681143194.4869213-CDS-Ecto-sp8_S_contig11116:2189..2236Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 2190..2236 -
1681143194.501708-CDS-Ecto-sp8_S_contig11116:2333..24811681143194.501708-CDS-Ecto-sp8_S_contig11116:2333..2481Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 2334..2481 -
1681143194.516991-CDS-Ecto-sp8_S_contig11116:2868..33701681143194.516991-CDS-Ecto-sp8_S_contig11116:2868..3370Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 2869..3370 -
1681143194.5246975-CDS-Ecto-sp8_S_contig11116:3615..37581681143194.5246975-CDS-Ecto-sp8_S_contig11116:3615..3758Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 3616..3758 -
1681143194.5327451-CDS-Ecto-sp8_S_contig11116:4393..46191681143194.5327451-CDS-Ecto-sp8_S_contig11116:4393..4619Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 4394..4619 -
1681143194.541344-CDS-Ecto-sp8_S_contig11116:4925..51221681143194.541344-CDS-Ecto-sp8_S_contig11116:4925..5122Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 4926..5122 -
1681143194.5504286-CDS-Ecto-sp8_S_contig11116:5508..56071681143194.5504286-CDS-Ecto-sp8_S_contig11116:5508..5607Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 5509..5607 -
1681143194.5620925-CDS-Ecto-sp8_S_contig11116:5861..59721681143194.5620925-CDS-Ecto-sp8_S_contig11116:5861..5972Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11116 5862..5972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11116.1483.1

>prot_Ecto-sp8_S_contig11116.1483.1 ID=prot_Ecto-sp8_S_contig11116.1483.1|Name=mRNA_Ecto-sp8_S_contig11116.1483.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=491bp
QTKNWQGDRGGGVNTADPSPAAARPLDTKRMQGLLRKELSRMTAIVKQRR
ILLKEWFMAEDARREEVVTQHLFTRCLRSHGLWPDVGPDAANEVNNTGFL
AGKKGLVGGLLLEAFRASPPRRAVSLGRDPVFLGQSFVNYVSFCGAVEPK
HGGRDLDDQRRVLDKAWKTKPKSPRSSQPSPTQVLPKHPASGRSWDSGAG
GGGKRGKGPISECPDTEVLPARAPMACEFNKSRTSGGPGQLDHWERIELK
RILDGQGGSTPPAKHFLTRKQAFSGIKKMVTQGRRPRIYGIEPQLSSDDD
SLNSLSGIGEGGSGSVVAAIPDGSSRTNLDVLFDAAAALSSSASSSGGGA
AAAVGRNGATNKGGGGGGGGQEEGGDPQADVRVLLRTLEEGVSAPGGVGP
LEWDWLSGEEARDRARKMYREASHAQRRMQLMADEEDEAVRQEADQIRSK
IAVLTRNAARLEALASASASSDTTGALTPLLFMHSIPTQGH
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mRNA from alignment at Ecto-sp8_S_contig11116:2190..5972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11116.1483.1 ID=mRNA_Ecto-sp8_S_contig11116.1483.1|Name=mRNA_Ecto-sp8_S_contig11116.1483.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3783bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11116:2190..5972- (Ectocarpus species8 EcLAC_412)
CAGACAAAGAACTGGCAGGGCGATCGAGGCGGGGGTGTCAACACCGCTGA
CCCCTCCCCAGCGGCGGCGCGTCCTCTGGACACCAAGCGGATGCAAGGTC
TGCTTCGAAAGGTGGGTTCAACCCCTCACAACAACCCTAAACTAAACTTG
CACCTTGTTGATATATCTGTTGAGCTCATTTACCCGTTCTCGGTGCAAGC
AGCCCCTTTTTTGTTCATCGCGCTTAGGGGCGCGGTTGCACACCGGCGAC
GGCGGGGAAAAGCTCCATTAATGACCGAAACCTAGGTATACACCCCACCA
TCCGCTGCTTGCACTAAACGAGCGTTGTATTTTACCTGTCTGTGTTATGA
TGTTCCCCTTCGAAGGAGCTGAGTCGTATGACAGCCATCGTCAAGCAGCG
CCGGATCCTGCTGAAGGAGTGGTTCATGGCGGAGGATGCCCGGCGAGAGG
AAGTGGTGACTCAGGTTGGTGGAGGGTGGGGGAAGGTAGCAACGAGAATT
AGCACCACAGCTTGCTTAGTGTTAGTGCGCGCTTTATCAGCGGTGACGGG
GAAGAACGGAACAAACGCTTTCTAGAGATGTGACCATCCGTGCTCGATGA
GTTCAGGAAGATGTTTAGAAACACTTGCGTATCCCGTTTAGCGGAGGGAA
GGGTAGGGTCATCCGCTGCAAGAAAACCTCCCCCATAGCCAACGATGGTA
GTACGAGCTTCCGCCCCTCCACTCCTATGGTACATGACAGGTCACTACGG
AGCTGTGTATTGCAATGTCACAAGTGCTGAAGTCCTCCTGTATTCCGCCC
GCGAATATAAGTCAACCCGCTTTGTCCCCGACCTTGACAAAAACGAACAG
CACCTGTTCACGAGATGCCTCAGGTCGCACGGGCTGTGGCCAGACGTGGG
TCCCGACGCCGCCAACGAGGTCAACAATACCGGCTTCCTCGCCGGGAAAA
AAGGCTTGGTGGGAGGGCTACTGTTGGAGGCGTTTCGAGCATCGCCCCCG
CGAAGGGCCGTGTCCTTAGGGAGGGACCCGGTGTTCCTGGGGCAGAGGTG
GGAAGTGTTTGCGTTGGAACTATTTACCATTTGCCCGGGAGCGGGAGCGA
GGAGAGAAAACGGAAGACTAGATCAGCGACGCCAAAGTCGTCTTCAGTAG
ACCCATCGGGGAGGATTCTTGTTCGACGTGTAGCGGGAACGCCTTCTTGG
CGCCGTCGAATCGTCAAGTTTTGCGTCGCTTTTGGTCATGTACCGTGTTC
GAGTGCGTCACACCCGCCGAGCTCCAAGATCCACTCTCGTCCTCTTCCCT
CCCCTATCCTCTCCTTCCCGGACCCCCTTTGGTCCCCACCAACACGGGAA
CAGCTTCGTGAACTACGTTTCATTCTGCGGGGCGGTCGAGCCTAAGCATG
GAGGGAGAGATCTCGACGACCAGCGCAGGGTGCTTGACAAGGCTTGGAAG
ACGAAGCCGAAAAGCCCGCGGAGTAGTCAACCATCGCCGACACAGGTTCT
TCCGAAGCATCCCGCGTCTGGGAGGAGTTGGGACAGTGGTGCCGGCGGCG
GTGGAAAACGCGGAAAAGGCCCGATTTCGGTGAGAGTTTTCTCCGTCGTT
TGCCTCTTTTGGCCGTGACTATAATAACAACTGTGTGTGTGGGCTTCGCG
TTCTGTGTGCACATCGGGCCTCCACCCCCCACCCTCAGTGTAGACCCGTC
GTTTGCCGCATCTTAGCTCACGCTCACGGACATAGAGTGTCCCACAGTTT
TATACCGCGAAAATTGCACACGCCAGCGGCAGATATCGCTTCGAAAAAGA
GAGAAAGTAGTGTGTTATCGACGGCGTTCAGGTGCCACTCACAACGTATA
GCCTGTTGATAACATGGACACAAAACAGGTTTGTTTCCAACTGTAAGTTC
TACTCGTGTTGGCCCTTGTTGCTACGCCGAATTGTCCTATTGGGCTATGC
ATACGGGGTGCACACGGGAAAATTATGAAGTGAAACTTAAATACGAAAGA
AACGCTACCCCATCCCCGTGCCGCGCGAAATGAAACGCCCCCATTCCCCG
CAAAAATTCTCCTCTCAAAACACCACCCACACAGTAACCCCCAACGCAAC
ACCGTGGCCTTTGCCTCAAAGGCCCTAGCCTAGAACAGTGTACAGCAACG
TGCCACGCGATCTCCAAATGTCTCAAAGCGTGGACCCAACCACCGTTGTC
TCCGCCACGCCCAGGAATGTCCCGACACGGAGGTGCTTCCCGCCAGAGCC
CCCATGGCATGCGAGTTCAATAAATCTCGCACCTCCGGCGGGCCCGGGCA
ACTAGACCACTGGGAGAGGATCGAGCTCAAGCGAATCTTGGACGGTCAGG
GAGGTAGGTTATACCCGATGGGTACCCTTTTGCTACGGGTGACACTGGTG
TGGGAATAGAGATGTCAGCGTCGTGGCTTGACATAGCGGGCACCTGAAAA
CCGTCATTTCGGAGAACGGGAATGGGAGGCGTAGAGTCATGGGGGGGTCA
GCGAGAGATACCGCGATAGCCGATCCAATTGTTCTTTAATATTTATGTCG
TATAAACACCCCCACCCCCAATCCCCTCTCCTCCCGTATGTCTAGCAGGT
AGTACTCCTCCCGCCAAGCACTTCCTTACTCGTAAGCAAGCCTTCTCGGG
GATAAAGAAAATGGTCACCCAGGGACGGCGCCCCCGCATCTACGGAATCG
AACCGCAGTTGTCTTCTGACGACGACAGCCTAAACAGCCTCAGCGGAATC
GGCGAAGGTGGCAGCGGCTCGGTTGTTGCAGCGATACCAGACGGCAGCAG
CCGAACAAACCTCGACGTTCTTTTCGACGCGGCCGCCGCTCTGTCCTCCT
CTGCGTCCTCCTCCGGCGGCGGTGCCGCCGCCGCCGTCGGTCGGAACGGG
GCCACAAACAAAGGAGGCGGCGGTGGCGGAGGGGGTCAAGAGGAAGGAGG
AGACCCACAGGCTGATGTCAGGGTGCTCCTCCGAACGCTGGAGGAGGGCG
TGTCTGCTCCGGGAGGGGTGGGGCCGCTGGAGTGGGACTGGTTGTCCGGC
GAGGAAGCCAGGGATCGGGCGAGAAAGATGTACCGCGAGGCATCGCATGC
CCAGGTAACACCCCATCAATCCTAGACACAAGGATTTTGGTCATTCGTCG
GGAGGTGACACTCATGAGCCTGTTCCGCCCCATTTTCGCTCCGTATAGGC
AAACACCAGCACTCTTTATTTCGCCGAAGTCACCAAGCAATCAACACCAA
CCTGGGCGAGATGCGATCGAGTGTTGCACGTTATTCGATGTGTCAACACT
ACGTCCCGAGATATCATGGACCCTATTGTTAGATGCTGGCATCGCCGTAC
CCGTGCGACTCTGCCACCGTTCCACCCACGACGCCCGTCATTGCTCTCAC
TACCAGCGTTTCTGTGCCACCACCCGTTTCCAAGAAACAAGCCCTTCTCC
CTTGCCCGCGCACCCTCCCATTATTTCCGTTTCATTCGAAGCGGCGCATG
CAGCTGATGGCGGACGAGGAGGATGAGGCCGTCCGACAGGAGGCCGACCA
GATCCGCTCGAAAATCGCCGTGCTGACGCGGAACGCTGCTCGCCTCGAAG
CTCTGGCGTCTGCTTCTGCTTCCTCCGACACCACCGGCGGTAAGAGTTCG
ATATTTCACTACGCGGTCTACATGTACATGTCCCCCCAAGATATTCCCAA
CCATTCCCCTTACTGATACCGCTCTAAACTGTACAGCTCTAACACCTCTG
CTCTTCATGCACTCGATTCCGACCCAGGGTCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11116:2190..5972-

>mRNA_Ecto-sp8_S_contig11116.1483.1 ID=mRNA_Ecto-sp8_S_contig11116.1483.1|Name=mRNA_Ecto-sp8_S_contig11116.1483.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11116:2190..5972- (Ectocarpus species8 EcLAC_412)
CAGACAAAGAACTGGCAGGGCGATCGAGGCGGGGGTGTCAACACCGCTGA
CCCCTCCCCAGCGGCGGCGCGTCCTCTGGACACCAAGCGGATGCAAGGTC
TGCTTCGAAAGGAGCTGAGTCGTATGACAGCCATCGTCAAGCAGCGCCGG
ATCCTGCTGAAGGAGTGGTTCATGGCGGAGGATGCCCGGCGAGAGGAAGT
GGTGACTCAGCACCTGTTCACGAGATGCCTCAGGTCGCACGGGCTGTGGC
CAGACGTGGGTCCCGACGCCGCCAACGAGGTCAACAATACCGGCTTCCTC
GCCGGGAAAAAAGGCTTGGTGGGAGGGCTACTGTTGGAGGCGTTTCGAGC
ATCGCCCCCGCGAAGGGCCGTGTCCTTAGGGAGGGACCCGGTGTTCCTGG
GGCAGAGCTTCGTGAACTACGTTTCATTCTGCGGGGCGGTCGAGCCTAAG
CATGGAGGGAGAGATCTCGACGACCAGCGCAGGGTGCTTGACAAGGCTTG
GAAGACGAAGCCGAAAAGCCCGCGGAGTAGTCAACCATCGCCGACACAGG
TTCTTCCGAAGCATCCCGCGTCTGGGAGGAGTTGGGACAGTGGTGCCGGC
GGCGGTGGAAAACGCGGAAAAGGCCCGATTTCGGAATGTCCCGACACGGA
GGTGCTTCCCGCCAGAGCCCCCATGGCATGCGAGTTCAATAAATCTCGCA
CCTCCGGCGGGCCCGGGCAACTAGACCACTGGGAGAGGATCGAGCTCAAG
CGAATCTTGGACGGTCAGGGAGGTAGTACTCCTCCCGCCAAGCACTTCCT
TACTCGTAAGCAAGCCTTCTCGGGGATAAAGAAAATGGTCACCCAGGGAC
GGCGCCCCCGCATCTACGGAATCGAACCGCAGTTGTCTTCTGACGACGAC
AGCCTAAACAGCCTCAGCGGAATCGGCGAAGGTGGCAGCGGCTCGGTTGT
TGCAGCGATACCAGACGGCAGCAGCCGAACAAACCTCGACGTTCTTTTCG
ACGCGGCCGCCGCTCTGTCCTCCTCTGCGTCCTCCTCCGGCGGCGGTGCC
GCCGCCGCCGTCGGTCGGAACGGGGCCACAAACAAAGGAGGCGGCGGTGG
CGGAGGGGGTCAAGAGGAAGGAGGAGACCCACAGGCTGATGTCAGGGTGC
TCCTCCGAACGCTGGAGGAGGGCGTGTCTGCTCCGGGAGGGGTGGGGCCG
CTGGAGTGGGACTGGTTGTCCGGCGAGGAAGCCAGGGATCGGGCGAGAAA
GATGTACCGCGAGGCATCGCATGCCCAGCGGCGCATGCAGCTGATGGCGG
ACGAGGAGGATGAGGCCGTCCGACAGGAGGCCGACCAGATCCGCTCGAAA
ATCGCCGTGCTGACGCGGAACGCTGCTCGCCTCGAAGCTCTGGCGTCTGC
TTCTGCTTCCTCCGACACCACCGGCGCTCTAACACCTCTGCTCTTCATGC
ACTCGATTCCGACCCAGGGTCAC
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