mRNA_Ecto-sp8_S_contig11067.1440.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11067.1440.1
Unique NamemRNA_Ecto-sp8_S_contig11067.1440.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11067.1440.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.610e-5
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   91 KKEGQVKIS---KGKSDFFRSRDVHGTGSSKWIIGKRQFDSNGRDKTLSYPVDDKGKMVTG 264
            K++G V+ S   + +S +F  +DV G    K I G +QFD+NG+++ LSYP D  GK ++G
Sbjct: 1049 KEDGTVRTSARRRSESKWFAYKDVRGINGGKDIFGLKQFDTNGKERNLSYPSDASGKDLSG 1109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11067.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFQ3_ECTSI2.610e-540.98Ubiquitin carboxyl-terminal hydrolase family prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11067contigEcto-sp8_S_contig11067:507..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143191.595896-CDS-Ecto-sp8_S_contig11067:506..7701681143191.595896-CDS-Ecto-sp8_S_contig11067:506..770Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11067 507..770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11067.1440.1prot_Ecto-sp8_S_contig11067.1440.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11067 507..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11067.1440.1

>prot_Ecto-sp8_S_contig11067.1440.1 ID=prot_Ecto-sp8_S_contig11067.1440.1|Name=mRNA_Ecto-sp8_S_contig11067.1440.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=88bp
QWSSLAEPINDKSVMVSIGSFGRAYKITVGKKEGQVKISKGKSDFFRSRD
VHGTGSSKWIIGKRQFDSNGRDKTLSYPVDDKGKMVTG
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mRNA from alignment at Ecto-sp8_S_contig11067:507..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11067.1440.1 ID=mRNA_Ecto-sp8_S_contig11067.1440.1|Name=mRNA_Ecto-sp8_S_contig11067.1440.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=265bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11067:507..771+ (Ectocarpus species8 EcLAC_412)
CAATGGTCAAGTCTTGCTGAACCCATCAACGACAAGAGCGTGATGGTGTC
GATTGGCTCCTTCGGCCGAGCGTACAAGATCACGGTGGGCAAGAAGGAGG
GCCAAGTCAAGATCAGCAAGGGGAAATCCGATTTTTTCCGCTCTCGCGAC
GTCCACGGCACCGGCAGCAGCAAGTGGATCATCGGAAAACGCCAATTCGA
CAGCAACGGAAGGGATAAAACCCTCTCGTATCCTGTCGACGATAAGGGCA
AAATGGTGACGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11067:507..771+

>mRNA_Ecto-sp8_S_contig11067.1440.1 ID=mRNA_Ecto-sp8_S_contig11067.1440.1|Name=mRNA_Ecto-sp8_S_contig11067.1440.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11067:507..771+ (Ectocarpus species8 EcLAC_412)
CAATGGTCAAGTCTTGCTGAACCCATCAACGACAAGAGCGTGATGGTGTC
GATTGGCTCCTTCGGCCGAGCGTACAAGATCACGGTGGGCAAGAAGGAGG
GCCAAGTCAAGATCAGCAAGGGGAAATCCGATTTTTTCCGCTCTCGCGAC
GTCCACGGCACCGGCAGCAGCAAGTGGATCATCGGAAAACGCCAATTCGA
CAGCAACGGAAGGGATAAAACCCTCTCGTATCCTGTCGACGATAAGGGCA
AAATGGTGACGGGG
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