mRNA_Ecto-sp8_S_contig11041.1416.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11041.1416.1
Unique NamemRNA_Ecto-sp8_S_contig11041.1416.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11041.1416.1 vs. uniprot
Match: D7FJB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJB8_ECTSI)

HSP 1 Score: 577 bits (1488), Expect = 7.990e-200
Identity = 306/331 (92.45%), Postives = 315/331 (95.17%), Query Frame = 1 
Query:    1 MTPQVLGALKLPFVAALALALVLPASAIDGSVGGTSCHREATACDANAECSTCRGGLERGMIATECQGYSGLLDPRPSFCKVLEASYCCNVGESGQTQACLAEDLMMEYLECLLGGRECSAIEDMPCYGEESRASVPRELSAAGEDEVSSVDAGYVEDSGSSPSPWYPLTTTPGPTSQLQPFTSATGPPTSMAVGLEGGLGTGVVKGTLSAMGVPMSLIDEVGEEVAVQEETLSPAARVLGVDVENLSFDNLRYFQGAESEVSITVNPEFLVDEGDIGGGTTTGEI--RGLAKTDLMAKSTGLGEKKSPLRTSGNRLSQTYAQDLVQLYAE 987
            MTPQV GALKLPFVAALALALVLPASAIDGSV GTSCHREATACDANAECSTCRGGLERGM+ATECQGYSGLLDPR SFCKVLEASYCCNVGESGQTQACLAEDL+MEYLECLLGGRECS IEDMPCYGEESRASVPRELSAAGEDEVSSVDAGYVEDSGSSPSP YPLTTTPGPTSQL+ FTSATG PTSMAVGLEGGLGTGVVKGTLSAMGVPMSLIDEVGE+VAVQEETLSPAA VLGVDVENLSFDNLRYFQGAESEVSITVNPEFLVD+ +IGGGTTTG +   G A+T LMAKSTGLGEKKSPL TSGNRLSQ+YAQDLVQLYAE
Sbjct:    1 MTPQVPGALKLPFVAALALALVLPASAIDGSVVGTSCHREATACDANAECSTCRGGLERGMLATECQGYSGLLDPRRSFCKVLEASYCCNVGESGQTQACLAEDLIMEYLECLLGGRECSTIEDMPCYGEESRASVPRELSAAGEDEVSSVDAGYVEDSGSSPSPSYPLTTTPGPTSQLKFFTSATGSPTSMAVGLEGGLGTGVVKGTLSAMGVPMSLIDEVGEKVAVQEETLSPAASVLGVDVENLSFDNLRYFQGAESEVSITVNPEFLVDQDEIGGGTTTGVVGATGDAETHLMAKSTGLGEKKSPLHTSGNRLSQSYAQDLVQLYAE 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11041.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJB8_ECTSI7.990e-20092.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11041contigEcto-sp8_S_contig11041:479..4694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size990
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_008100.1
Cds size990
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143189.759536-CDS-Ecto-sp8_S_contig11041:478..5771681143189.759536-CDS-Ecto-sp8_S_contig11041:478..577Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11041 479..577 -
1681143189.7689564-CDS-Ecto-sp8_S_contig11041:1410..14301681143189.7689564-CDS-Ecto-sp8_S_contig11041:1410..1430Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11041 1411..1430 -
1681143189.7775443-CDS-Ecto-sp8_S_contig11041:2782..29631681143189.7775443-CDS-Ecto-sp8_S_contig11041:2782..2963Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11041 2783..2963 -
1681143189.7864218-CDS-Ecto-sp8_S_contig11041:4004..46941681143189.7864218-CDS-Ecto-sp8_S_contig11041:4004..4694Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11041 4005..4694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11041.1416.1prot_Ecto-sp8_S_contig11041.1416.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11041 479..4694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11041.1416.1

>prot_Ecto-sp8_S_contig11041.1416.1 ID=prot_Ecto-sp8_S_contig11041.1416.1|Name=mRNA_Ecto-sp8_S_contig11041.1416.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=330bp
MTPQVLGALKLPFVAALALALVLPASAIDGSVGGTSCHREATACDANAEC
STCRGGLERGMIATECQGYSGLLDPRPSFCKVLEASYCCNVGESGQTQAC
LAEDLMMEYLECLLGGRECSAIEDMPCYGEESRASVPRELSAAGEDEVSS
VDAGYVEDSGSSPSPWYPLTTTPGPTSQLQPFTSATGPPTSMAVGLEGGL
GTGVVKGTLSAMGVPMSLIDEVGEEVAVQEETLSPAARVLGVDVENLSFD
NLRYFQGAESEVSITVNPEFLVDEGDIGGGTTTGEIRGLAKTDLMAKSTG
LGEKKSPLRTSGNRLSQTYAQDLVQLYAE*
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mRNA from alignment at Ecto-sp8_S_contig11041:479..4694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11041.1416.1 ID=mRNA_Ecto-sp8_S_contig11041.1416.1|Name=mRNA_Ecto-sp8_S_contig11041.1416.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11041:479..4694- (Ectocarpus species8 EcLAC_412)
ATGACACCTCAGGTACTGGGAGCCCTCAAGCTTCCTTTCGTTGCAGCCTT
GGCGTTGGCGTTGGTCCTCCCGGCATCTGCCATCGACGGGTCCGTAGGGG
GAACATCCTGCCACCGCGAAGCCACGGCCTGCGACGCCAACGCGGAGTGC
TCGACATGTCGGGGTGGACTGGAGCGGGGGATGATCGCGACGGAATGTCA
AGGCTATTCAGGTCTCTTGGACCCACGACCGAGCTTCTGCAAAGTTCTTG
AGGCATCATACTGCTGCAACGTAGGGGAGAGCGGTCAGACTCAGGCATGT
CTGGCGGAGGATCTGATGATGGAATACTTGGAGTGCCTGCTGGGCGGTCG
GGAATGCTCTGCCATAGAAGATATGCCCTGCTACGGTGAGGAGTCTCGTG
CTTCGGTGCCGCGCGAACTCTCAGCCGCAGGAGAGGACGAAGTGTCTTCT
GTCGACGCCGGCTACGTCGAGGACAGCGGCAGTAGCCCATCGCCTTGGTA
TCCCTTGACCACGACGCCAGGTCCTACCTCGCAGCTTCAGCCTTTCACCA
GCGCGACCGGTCCGCCGACCTCCATGGCGGTCGGATTAGAGGGGGGCTTG
GGAACGGGGGTGGTGAAGGGGACTTTGTCTGCGATGGGTGTGCCGATGTC
TTTGATTGACGAGGTCGGGGAGGAGGTCGCCGTTCAAGAGGTGAGACATG
TATTGGGCAGGTGTTTGTTCGTTTGTTACTCTTACCGTGAGCTTGTGCCG
GCCGCAATATGTCACGTACGCCCCTACTTAGTTATCTCCTCTTCTTTGAG
TCCATGTCCCTGTCGCTTCCACGATGAGATATGGTACGATTACCAGTTCG
CGTCCCCCGTCCTCGCGCAGGCGGTGTGCGCGCTTATTCTTTGCCCTGGA
GGCTCTAGCTCGGTCATCGTAGGAGAGTCCGACCTCGGCGGCGCTTCTCG
TCGGGCCCTCGAGACAGTGACGGCAGCACGACCGCGGCGGTGGCCGGCAC
GCCGGCACCTGCTTGTGTTCGAAGCTGTAGCGTTCGCGATACCCACCGGG
CAGGGGATGACAGGATCCCAGCAAGCCGCGGCGATGTTCAATAAAATGGC
GCTCCTGGTACGGGTTGGTCCTGCGAGTCGTAGGGTAGCCTCCTTTGGAC
GTGGCATCTCGATTTTTGTTGATTGCCTCTTTCGGAATCCTGAGTTGAGT
ACTGTTCGGACACCGAAAAAGTAGACAGTTCGGTTCGAGTGGCAGGAACG
GTGCCATAATACCTTTGCCCATCATCAACTAGATTGGATGGTACCTGCGG
TAGGGGACGAGTGTTCCACCACTACTTTTATTAACGTGGTAGAGATACCG
TACTGCATTATATCAGGGGAGACGTTCTGTAGGTTGTCAAACCCGTGCAT
GTAAGCTTTGCGCTCTTGCTGCCGGTAGACCAAGGACACAGCCTTACAGT
GATAAAGTGACCGCAACTATGATATTTACCCATCTCAACGCTGGGAGGAA
CAAAACTGTCGCGATGACGCAATCAGCGCTCATGCTACCATGGTGACACG
CATGGCATTACATCAACGGCATCCTTTTCTGGTCATGCGTAACCTGCTGT
CCGTTTCGTGCTTTCACCTCCGCACATGAACACCCACCACCGGTGCCTCC
AGCGTTTACCCCGCGATTGCGAGCAAACTGCCACGGCTTCGTGGTTGATC
GTACCCCCGTCCCCTTCTCCTCCGTGTATAGGAGACTCTCTCCCCGGCAG
CAAGAGTGCTCGGCGTGGATGTAGAAAACCTATCCTTCGACAACCTACGC
TACTTCCAGGGGGCGGAATCTGAAGTGTCAATCACGGTCAACCCCGAGTT
TCTCGTGGACGAGGGTGACATTGGCGGGGGGACCACTACCGGTGAGATTC
GAGGCCTGGCCAGTCTTGCCCATGGCGATACAAAGAGCCAAAGGCAGGCG
GAATTGGCTGACACGAGATCAGCACCTACGATAGACTTGGATATGTTCTT
GTCGCAACCTGCACTGCCGAACTTCCTGCGGTGATTTCGACCGTGCTGTG
CAGTGCAGGATGGACGTTTGTGCTGAAAGTCAGAGTATCTGCGTGCACGA
GATACATGAAGAGGTATCGTGCCATCAGCTGTTTGGCAACATCCGGTTCG
CTCTGCCCCACCTGTTGGTTGTGTGTGCTCTCTCGTTTCGCCCTGGCCAT
GATGGAAATAGGAAGTGCGACATTCGCTGGGATTGCGATGGGGTTTCTGG
CTCCACTGATGTGCTGCACACTCTGTTTGAGGTGTTTCCAAGGGAACAAG
AAGACTAGAACAGCAATGGTGATTGAGGTGGGTAGCGCACACATGAAGCT
CAGAGTTCTGGCGCCACTCTCAGGAGATGCCGGCTACGTGTTCAGGGCGT
GGTTTCCATCGAGTAACGCCTAGGTTGCTTGGCGCAAGCGGTGTTAGACT
GGCGCGCACTATCACGTAATCCGCACTATCACGTAATCTCGAGCACCTTG
ACGCTTTCGGGCAGATTATGTCCGAGCTCCACGATGGTGCATCAGAGTGT
GATGAACCTTGTGCAAGCGTGCACGTTACGGGTGTACTATGCATGCAAAA
ACTGGTGATTAGTAGTACACTGCTGTCGTGTGTTTTTTCCCTTCACTGTG
TAATACACCACAACGTACCGTGGCTCTCCACGATCGATCAAATGAGAAAC
CAATAATTCGGTTGCCGCCTTTCTCAAAACCAGCCCTTCGCGGCACACGA
TCCTGGCAACCCCCTACATACATTCTTGTTGCCTGTCAACTTGAAGAATG
CACTCAGAACACGAAATCTCGTTCCCCCTGCTTCACGAAAACGCCTCGTC
CTTTGCCAAAACTCGCTAGGCACTTCTCCATTCGAATCATGGTAAGGGGA
TGGTTTCTTCCTTTTTGTTCCCTCGACACGAGACAGGAATAACACGCGAC
TAGCATCTTGCCACGATCTATAGGCATGGAAAACATCCGTTGCGCTGAGC
AAGCCCTTCCAGTAATCGCGTGAACCCGCTGTGCGTCCAATCGCGTTTTT
ACCTACCTGTAGGACGAAGAACGAGGAAGGAGTGCCGGGGAAGCGCCTCC
ACTACAATCGGCAACGGAAGTCATTCAAAAACAAACGACCGCCCAGCTTC
AGCTGGCGACGTATTCGACGGGGCTCGCTACAACACACTCCTCCCTTACT
TCGGACGCCCTTGCCGCAATGCATTCTTTGCCTACCGGGGTCGTCGGCGC
TACCGGTGATGCAGAGACCGACCTGATGGCAAAGGTAAGCAGAAAAGCAA
AAACGACACTCACACGAGCAGTCGTACATGATACGGAGGAAATTGCTGGG
TCTCTGCCACCTACAATGTCAGGGTAACTGCAATGACAGGGTAGTTGATA
CCGTTTTCGGGAAAGTGCCGATTGTTGTGTGCATGAGATGCGGTTATTCG
GACTGACGTCCCCAGAAAGGTTGGCATCCCGGAGGGTAAATGACCGGACG
ATGCTATCGTTGGTTGTACGATGGAAGACACCACACGCCCTGGGCTGGTA
TTTATTGCTCCATGTCGGCACCGCAGCAAACATGCAAGAGTCGGAAAAGG
GTGGCATTGCACGGCTGTTGTCAAGAGCGCTACCAAACGACACATCGTTC
GCTAAATGAATACGATTATTGTCGAGGTATCGAGCGTCAAAATTCGCTCC
AGAAGGTGTGGTACTCTCCGTCGCCAACAGGCAGGGTACCACGAAGCTCC
GGGCGAAAAGGGGCTCTTTTTCAGGGTCCTCCATACAATAGAACGGATTG
TAGGTACTATTTGATCCGTTGGGCGCTTGGAAATGTTATATACAAGCATG
TGAGCCGTTGCTGCCGTAGATGATGATGGCTCGTATGGTTGCCACTGAAG
GTAACCGCTACAGTGAACCTCGCGGCCGCTTCAGAGCCATTCAACATGGT
CTTGGTGGATGGTGTACGTTCATTCTCTTGTGTTTTTTCGATTGGCATGT
CTCACACGTGAAAGATTTGGGAAATCCTCTACTAGTGCCCACCATCATCC
TCGTTTGCTCCTTTCGCTACTGGCGATGTGTTGATTTTCCCACTTCGGAT
ACGCGTTTGCACTACAGTCCACAGGATTAGGCGAGAAGAAATCACCACTC
CGCACAAGCGGGAACCGCCTCTCGCAGACGTATGCCCAAGATCTGGTGCA
GCTATACGCTGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11041:479..4694-

>mRNA_Ecto-sp8_S_contig11041.1416.1 ID=mRNA_Ecto-sp8_S_contig11041.1416.1|Name=mRNA_Ecto-sp8_S_contig11041.1416.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11041:479..4694- (Ectocarpus species8 EcLAC_412)
ATGACACCTCAGGTACTGGGAGCCCTCAAGCTTCCTTTCGTTGCAGCCTT
GGCGTTGGCGTTGGTCCTCCCGGCATCTGCCATCGACGGGTCCGTAGGGG
GAACATCCTGCCACCGCGAAGCCACGGCCTGCGACGCCAACGCGGAGTGC
TCGACATGTCGGGGTGGACTGGAGCGGGGGATGATCGCGACGGAATGTCA
AGGCTATTCAGGTCTCTTGGACCCACGACCGAGCTTCTGCAAAGTTCTTG
AGGCATCATACTGCTGCAACGTAGGGGAGAGCGGTCAGACTCAGGCATGT
CTGGCGGAGGATCTGATGATGGAATACTTGGAGTGCCTGCTGGGCGGTCG
GGAATGCTCTGCCATAGAAGATATGCCCTGCTACGGTGAGGAGTCTCGTG
CTTCGGTGCCGCGCGAACTCTCAGCCGCAGGAGAGGACGAAGTGTCTTCT
GTCGACGCCGGCTACGTCGAGGACAGCGGCAGTAGCCCATCGCCTTGGTA
TCCCTTGACCACGACGCCAGGTCCTACCTCGCAGCTTCAGCCTTTCACCA
GCGCGACCGGTCCGCCGACCTCCATGGCGGTCGGATTAGAGGGGGGCTTG
GGAACGGGGGTGGTGAAGGGGACTTTGTCTGCGATGGGTGTGCCGATGTC
TTTGATTGACGAGGTCGGGGAGGAGGTCGCCGTTCAAGAGGAGACTCTCT
CCCCGGCAGCAAGAGTGCTCGGCGTGGATGTAGAAAACCTATCCTTCGAC
AACCTACGCTACTTCCAGGGGGCGGAATCTGAAGTGTCAATCACGGTCAA
CCCCGAGTTTCTCGTGGACGAGGGTGACATTGGCGGGGGGACCACTACCG
GTGAGATTCGAGGCCTGGCCAAGACCGACCTGATGGCAAAGTCCACAGGA
TTAGGCGAGAAGAAATCACCACTCCGCACAAGCGGGAACCGCCTCTCGCA
GACGTATGCCCAAGATCTGGTGCAGCTATACGCTGAGTGA
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