mRNA_Ecto-sp8_S_contig11017.1390.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: D7FPU1_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU1_ECTSI) HSP 1 Score: 239 bits (611), Expect = 8.110e-72 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1
Query: 1 QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS
Sbjct: 47 QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 219
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A6H5L0B7_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B7_9PHAE) HSP 1 Score: 239 bits (611), Expect = 4.400e-70 Identity = 164/173 (94.80%), Postives = 164/173 (94.80%), Query Frame = 1
Query: 1 QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXX ERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS
Sbjct: 174 QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXGMRQVQQRRERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 346
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A835ZJ40_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ40_9STRA) HSP 1 Score: 106 bits (265), Expect = 5.210e-23 Identity = 71/160 (44.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query: 49 AARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXER---VQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
AARLS + +D+NRV+ +A DL +A RR ++D +R ++ QM EEAIN AII+ETE EL INKSL+ V+EI++DLA++V QQQE VE IE TE AH RAQ+GL QVQ+A+ YQPSC +S
Sbjct: 20 AARLSVCCVR-EQDYNRVSRLAKDLEVEAARRAEDLDRRRRGTAAAEAAVAARIFGVEDNADSAGGGALRGPQQQQLQAQMAEEAINQAIIEETEAELGAINKSLHAVHEIFKDLASMVSQQQEQVEHIEEQTEAAHQRAQQGLAQVQQASHYQPSCSIS 178
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: F0Y8W0_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8W0_AURAN) HSP 1 Score: 89.0 bits (219), Expect = 9.060e-16 Identity = 48/83 (57.83%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 271 RVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
+V MQEEAIN AI++E EEE+++IN++++KVNEI+RDLA +V++QQ V++I E +HA A++GL QVQKA QPSCVVS
Sbjct: 217 QVAMQEEAINDAILREREEEIREINQNVHKVNEIFRDLATLVDKQQGEVDQIGELVEKSHAHAEKGLDQVQKAAKLQPSCVVS 299
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A7S3JXJ1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXJ1_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.230e-14 Identity = 46/83 (55.42%), Postives = 66/83 (79.52%), Query Frame = 1
Query: 271 RVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
+V MQEEAIN AI++E EEE+++IN+S++KVNEI+RDLA IV++QQ V++I E +H A++GL QVQKA QP+C++S
Sbjct: 232 QVAMQEEAINDAILREREEEIREINQSVHKVNEIFRDLALIVDKQQTEVDQIGDLVEKSHNHAEKGLDQVQKAAKLQPTCLIS 314
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A7S3Q8K2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8K2_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.590e-11 Identity = 52/174 (29.89%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 1 QMRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREVDAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKAN-DYQPSCVVS 519
Q+ Q++ E +R DA++ A + KLT+D+ V ++ + ++R ++A+R ++Q+Q+E + I++E EEE+++INK +++VNEIY+DLANIV QQ+ V+E+E + E A+ A+ GL Q++KA+ +C++S
Sbjct: 110 QLAQQEKHMETMTRTDASKGRATHVKLTRDYRWVETKFKNIQLECKQRRNAIEAERLAAVEDTNRKQFEKGIDSNNAKH-----------QMQLQDERVTEEIMREREEEVRKINKGMHQVNEIYKDLANIVSYQQDQVDEVEEHMESANKNAESGLKQIEKASAKSDQACIIS 272
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A7R9W8L2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8L2_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.330e-10 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 271 RVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPS---CVVS 519
R Q+QE+ + I++E EEE++ INK ++ VNEIY+DLA+IV QQE ++++E N E A +EGL QV+KAN+ S C++S
Sbjct: 240 RAQLQEDRLAEEIMREREEEIRNINKGMHTVNEIYKDLAHIVGNQQEQIDQVEANMEDAKVTTEEGLKQVEKANEKADSPYQCLIS 325
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A8J2T2B1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2B1_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.620e-10 Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 271 RVQMQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVV 516
+V MQ+E I+ A+++E E EL+ IN ++KVNEI+RDLA +V++QQ+ V++I E +HA A++GL QVQKA Q SC +
Sbjct: 165 QVAMQDEDIDEALVREREAELRNINADVHKVNEIFRDLATLVDKQQDDVDKIGELVERSHAHAEKGLDQVQKAAANQSSCAL 246
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A812UZ92_SYMMI (SYP22 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UZ92_SYMMI) HSP 1 Score: 68.9 bits (167), Expect = 5.650e-10 Identity = 35/80 (43.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 280 MQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
MQ + ++ AII+E E+++++IN L VNE++RD+A IVE Q + +E+I +TE + RA++GL +V++A YQP+C +S
Sbjct: 89 MQGQDVDDAIIEEREKDIKKINHDLVLVNEMFRDMAQIVEGQGKTIEKIAEDTESSRERAEQGLAEVKQAAIYQPTCSIS 168
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Match: A0A4D9D2P6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2P6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 7.540e-10 Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 280 MQEEAINTAIIQETEEELQQINKSLYKVNEIYRDLANIVEQQQEAVEEIETNTEGAHARAQEGLVQVQKANDYQPSCVVS 519
+Q E ++ ++QE EEE+ IN+S+ KVNEI+RDL +V +QQE ++ IE N + +HA A+ GL QV KA YQ C +S
Sbjct: 216 LQAEDLDERLLQEREEEIVAINQSVVKVNEIFRDLGELVSRQQEDIDAIEQNVQHSHAAAKSGLEQVAKAAKYQAGCSLS 295 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11017.1390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11017.1390.1 >prot_Ecto-sp8_S_contig11017.1390.1 ID=prot_Ecto-sp8_S_contig11017.1390.1|Name=mRNA_Ecto-sp8_S_contig11017.1390.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=173bp MRLQQQQAEGASRQDAARLSAMNSKLTKDFNRVNAIALDLGTQAERRMREback to top mRNA from alignment at Ecto-sp8_S_contig11017:2088..6130- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11017.1390.1 ID=mRNA_Ecto-sp8_S_contig11017.1390.1|Name=mRNA_Ecto-sp8_S_contig11017.1390.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4043bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11017:2088..6130- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11017:2088..6130- >mRNA_Ecto-sp8_S_contig11017.1390.1 ID=mRNA_Ecto-sp8_S_contig11017.1390.1|Name=mRNA_Ecto-sp8_S_contig11017.1390.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11017:2088..6130- (Ectocarpus species8 EcLAC_412)back to top |