mRNA_Ecto-sp8_S_contig10991.1358.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10991.1358.1
Unique NamemRNA_Ecto-sp8_S_contig10991.1358.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10991.1358.1 vs. uniprot
Match: A0A6H5JMQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ8_9PHAE)

HSP 1 Score: 489 bits (1260), Expect = 1.350e-169
Identity = 264/295 (89.49%), Postives = 269/295 (91.19%), Query Frame = 1 
Query:  214 MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHTTLQQVGVYSGSYAVPGVFGGQTF--QHGGGSAPRPPSVSAPTATPSQPPQAAGSINGTTNHMVLDNDPSLHHPPAVTSVAWGGAAIASPAVLFGQQESVPATSALQFAQLGQQLLPQQQVHGFGGIGSSVAPAALVPPAQLVGIHPTASLTTTTSVDTGVSTHVVDGGVAGGGAMASVLQQHPPPPLSDIGGAVVPLPVANSGPTFTFNGXXXXXXGIDPLTRPVFQPGFNPTALQNQQQPAPVFTTPPSTGFPLSAFVGEQQQ 1092
            MS SSGGGSSDHRGTPSKGGRSDTNGTVSH T QQ GVYSGSYAVPGVFGGQT   QHGGGSAPRPPSVSAP A PSQPPQAAGSI  T NHMVLDNDPSL HPPAVTSVAWGGA IASPAVLFGQQES+ ATS LQFAQLGQQLLPQQQ+HGF GIGSSVAPAALVPPAQL GIHPTASLT+TTSVDT VSTHVVD GVAGGGA+ SVLQQHPPPPLSDIGGAVVPLPVANSGPT+TFNG  XXXX  DPLTRPVFQPGFNPTALQNQQQPAPVFTTP STGFPLSAFVGEQQQ
Sbjct:    1 MSSSSGGGSSDHRGTPSKGGRSDTNGTVSHVTSQQAGVYSGSYAVPGVFGGQTVTSQHGGGSAPRPPSVSAPPAAPSQPPQAAGSIKSTANHMVLDNDPSLDHPPAVTSVAWGGATIASPAVLFGQQESIAATSTLQFAQLGQQLLPQQQLHGFRGIGSSVAPAALVPPAQLAGIHPTASLTSTTSVDTAVSTHVVDCGVAGGGAVTSVLQQHPPPPLSDIGGAVVPLPVANSGPTYTFNGGGXXXXVSDPLTRPVFQPGFNPTALQNQQQPAPVFTTPSSTGFPLSAFVGEQQQ 295
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BLAST of mRNA_Ecto-sp8_S_contig10991.1358.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.780e-25
Identity = 84/189 (44.44%), Postives = 86/189 (45.50%), Query Frame = 1 
Query:  214 MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHTTLQQVGVYSGSYAVPGVFGGQTFQHGGGSAPRPPSVSAPTATPSQPPQAAGSINGTTNHMVLDNDPSLHHPPAVTSVAWGGAAIASPAVLFGQQESVPATSALQFAQLGQQLLPQQQVHGFGGIGSSVAPAALVPPAQLVGIHPTASLTTTTSVDTGV 780
            MSGSSGGGSSDHRGTPSKGGRSDT GT                                                                                                   SVPATSALQFAQLGQQLLP QQ+HGFGGIGSSVAPAALVPPAQL GIHPTASLTT TSVDTG+
Sbjct:    1 MSGSSGGGSSDHRGTPSKGGRSDTYGT---------------------------------------------------------------------------------------------------SVPATSALQFAQLGQQLLPHQQLHGFGGIGSSVAPAALVPPAQLAGIHPTASLTTATSVDTGL 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10991.1358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMQ8_9PHAE1.350e-16989.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2K6_ECTSI5.780e-2544.44P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10991contigEcto-sp8_S_contig10991:3034..5540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score116.3
Seed ortholog evalue2.7e-23
Seed eggNOG ortholog2880.D7G2K6
Model size1194
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-11_002580.1
EC1.14.11.2
Cds size981
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143185.8261192-UTR-Ecto-sp8_S_contig10991:3033..32461681143185.8261192-UTR-Ecto-sp8_S_contig10991:3033..3246Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10991 3034..3246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143185.839867-CDS-Ecto-sp8_S_contig10991:3246..36241681143185.839867-CDS-Ecto-sp8_S_contig10991:3246..3624Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10991 3247..3624 +
1681143185.8492913-CDS-Ecto-sp8_S_contig10991:4937..55401681143185.8492913-CDS-Ecto-sp8_S_contig10991:4937..5540Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10991 4938..5540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10991.1358.1prot_Ecto-sp8_S_contig10991.1358.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10991 3247..5540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10991.1358.1

>prot_Ecto-sp8_S_contig10991.1358.1 ID=prot_Ecto-sp8_S_contig10991.1358.1|Name=mRNA_Ecto-sp8_S_contig10991.1358.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=327bp
MSGSSGGGSSDHRGTPSKGGRSDTNGTVSHTTLQQVGVYSGSYAVPGVFG
GQTFQHGGGSAPRPPSVSAPTATPSQPPQAAGSINGTTNHMVLDNDPSLH
HPPAVTSVAWGGAAIASPAVLFGQQESVPATSALQFAQLGQQLLPQQQVH
GFGGIGSSVAPAALVPPAQLVGIHPTASLTTTTSVDTGVSTHVVDGGVAG
GGAMASVLQQHPPPPLSDIGGAVVPLPVANSGPTFTFNGGGGGGGGIDPL
TRPVFQPGFNPTALQNQQQPAPVFTTPPSTGFPLSAFVGEQQQRQKAAPV
FMIPPSTGLAPSACGGEQQQLMVMPVI
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mRNA from alignment at Ecto-sp8_S_contig10991:3034..5540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10991.1358.1 ID=mRNA_Ecto-sp8_S_contig10991.1358.1|Name=mRNA_Ecto-sp8_S_contig10991.1358.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2507bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10991:3034..5540+ (Ectocarpus species8 EcLAC_412)
CTGTGCTTGTGGTGCTTCCAACCCACAACCCGTTGATTGTTGGACGGAAC
TCTGTGGTGCGGTTTGTACCAACACCCACACCCTGGTAGGAGGAGGAACC
GGCTGTAGTACGGCTAGTACTCCCTGCCGTCTTTATGCGGTGCTGTGTGG
CTGCTAGACGCAGACACAGCAACACACTTGTTGCCTCACGGGCTACTCGG
CTAGTCGTCAACAATGAGCGGTTCCAGCGGGGGCGGGAGCAGCGACCATC
GTGGCACCCCCAGCAAGGGCGGGCGAAGCGACACTAATGGCACGGTGAGC
CACACCACCTTGCAGCAGGTGGGTGTTTACAGCGGCAGCTACGCTGTGCC
TGGAGTGTTTGGCGGGCAAACTTTCCAACATGGAGGAGGGTCAGCTCCTC
GCCCGCCTTCAGTTTCGGCACCAACAGCAACACCGTCACAACCACCGCAA
GCAGCAGGCAGCATCAACGGCACCACGAACCACATGGTGCTGGATAACGA
CCCATCTCTTCACCATCCTCCTGCCGTCACTTCGGTGGCATGGGGTGGCG
CTGCCATCGCTTCCCCGGCCGTGTTGTTTGGGCAGCAGGAGGTGCGCGTG
CATGTCTGTTTTTTGCAAGTGTTGTTGTAATTTATGCATACGGTATCAGC
AGTCCACCCCCTGGAGGAAGCGTGTCCCTCTTGGTAGTACAAGTAGTGCA
TATGATGATAAGACTTTAAAGACGAATCCGTTGAAGGGACTGTTGTCCTA
GCTGGTTGATTCATTGTGTATTTTCTAAAGGTAAAGGGCGTCGCAGACGT
GCAGACCTCAGAAAACCGATCTTGATGTGGGCGGCTGATTTTATATGCAT
ACAATATAACGGACCGAAAGAGCGCGACCGAAAGAGAGCCTGTTATATAA
TAGCAGCGCAGGAAAATATCCGCTGGTTGTGGCAAAGAGAAGCGCCTGGA
GCTTGTCTCCCCTAACATTCCATGCAGTCTACCTGCTCCACACACTTTCT
CTTAACCCAAGAGACTTTCCCCAAACGTACATCTCCGTTCAAGACAAACC
GCCGAAACGGCGCGTGCCAATATATGCGGTTGCGAGTCCCAACCTGTGGT
ACATGATGTTGCAGGGACAGGCGTGCTGCTACACTTGCCCTCACTGGCCC
AATCTCCCGAATAGCGGGTAACAGGCTCGTACTAGGTACCTTGGAAGACC
TGATTTGTTTTTTTTGTGGCGGCGAATACCATAAGCAGTCAGTGGTTTGA
ATGCAGATTTGTGGAGTTGAACCCAGCTGTGGCCTTCCTTAGCACGACTC
CGGCATTAGCTCTAAAAGCGTACCAACGCGCAAGCCGCTGCTACAATATT
TCCCTCTAGTGATGGAGCGTTTTTGAGATCGTTTTCCAGTTTTGGACCTC
CACCATGTTGGAATTTGGCCAGAACCGATCGACAGCCATGTGATAGCCGG
CCGCGTTTGACTCTCTACAGAACGCGTCCGCGCTTACAAATAGAACCTCT
AGTTTCGGCAGAGGCTGGGTTTCTGGGTTCCTAGGGTCATGCTACGAATG
ATCGCTATATAGGTTTTGGTGCAGAGGTTCTTAACCGAGCTCACAAATGG
TGCTCAAGTTCAACCGTTGATTTTTTTCGACGCTCAATTTCTCAACTCCT
GGGTTCTTACGTGCGGGCGCGTTCTGTGCTTCGGTCCACATGGTACGAAA
CGTTTATATGTCTTGGTACATTTGTGGACACCGCGTTTGTGTGCATGGAA
GAGGGTGTGGTTTGAAGCCCACATGGTGGTGTGGATCCGTGCAGCCTTTG
GTTGGCCCATAACATCGACAGGCCGGTCTCGTCGTTCGGTCTTCGAATCC
ATCGTGCCCGCCTCTTCGTATGCTCATGTACGTCCACGCCTGCTTGGGGG
CCAGAGCGTTCCGGCCACAAGCGCCTTGCAGTTCGCACAGCTAGGACAAC
AGCTGCTCCCGCAGCAGCAGGTTCACGGATTCGGAGGGATCGGATCGTCC
GTTGCCCCAGCCGCTCTGGTTCCACCGGCCCAACTGGTTGGCATCCACCC
TACCGCTTCGCTCACAACAACGACCTCCGTCGACACTGGTGTCAGCACGC
ATGTCGTCGATGGTGGTGTTGCTGGCGGGGGGGCGATGGCATCAGTGCTG
CAACAGCACCCCCCCCCACCCCTCAGCGATATTGGTGGCGCTGTAGTGCC
CCTCCCCGTGGCAAACAGCGGTCCCACATTCACCTTCAACGGCGGAGGCG
GCGGAGGCGGCGGTATTGACCCGCTGACGAGGCCTGTCTTTCAGCCTGGA
TTCAACCCAACGGCACTGCAGAACCAACAGCAGCCGGCACCGGTATTCAC
GACCCCGCCGTCCACGGGTTTCCCACTCTCTGCCTTCGTTGGCGAGCAGC
AGCAGCGGCAGAAGGCGGCACCGGTGTTCATGATCCCGCCATCCACTGGA
TTGGCCCCCTCTGCCTGTGGTGGCGAGCAACAACAGCTGATGGTGATGCC
CGTGATT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10991:3034..5540+

>mRNA_Ecto-sp8_S_contig10991.1358.1 ID=mRNA_Ecto-sp8_S_contig10991.1358.1|Name=mRNA_Ecto-sp8_S_contig10991.1358.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=981bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10991:3034..5540+ (Ectocarpus species8 EcLAC_412)
ATGAGCGGTTCCAGCGGGGGCGGGAGCAGCGACCATCGTGGCACCCCCAG
CAAGGGCGGGCGAAGCGACACTAATGGCACGGTGAGCCACACCACCTTGC
AGCAGGTGGGTGTTTACAGCGGCAGCTACGCTGTGCCTGGAGTGTTTGGC
GGGCAAACTTTCCAACATGGAGGAGGGTCAGCTCCTCGCCCGCCTTCAGT
TTCGGCACCAACAGCAACACCGTCACAACCACCGCAAGCAGCAGGCAGCA
TCAACGGCACCACGAACCACATGGTGCTGGATAACGACCCATCTCTTCAC
CATCCTCCTGCCGTCACTTCGGTGGCATGGGGTGGCGCTGCCATCGCTTC
CCCGGCCGTGTTGTTTGGGCAGCAGGAGAGCGTTCCGGCCACAAGCGCCT
TGCAGTTCGCACAGCTAGGACAACAGCTGCTCCCGCAGCAGCAGGTTCAC
GGATTCGGAGGGATCGGATCGTCCGTTGCCCCAGCCGCTCTGGTTCCACC
GGCCCAACTGGTTGGCATCCACCCTACCGCTTCGCTCACAACAACGACCT
CCGTCGACACTGGTGTCAGCACGCATGTCGTCGATGGTGGTGTTGCTGGC
GGGGGGGCGATGGCATCAGTGCTGCAACAGCACCCCCCCCCACCCCTCAG
CGATATTGGTGGCGCTGTAGTGCCCCTCCCCGTGGCAAACAGCGGTCCCA
CATTCACCTTCAACGGCGGAGGCGGCGGAGGCGGCGGTATTGACCCGCTG
ACGAGGCCTGTCTTTCAGCCTGGATTCAACCCAACGGCACTGCAGAACCA
ACAGCAGCCGGCACCGGTATTCACGACCCCGCCGTCCACGGGTTTCCCAC
TCTCTGCCTTCGTTGGCGAGCAGCAGCAGCGGCAGAAGGCGGCACCGGTG
TTCATGATCCCGCCATCCACTGGATTGGCCCCCTCTGCCTGTGGTGGCGA
GCAACAACAGCTGATGGTGATGCCCGTGATT
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