mRNA_Ecto-sp8_S_contig10978.1343.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI) HSP 1 Score: 285 bits (729), Expect = 7.730e-97 Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 1
Query: 1 MKSFLFVALILLAAVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
MKSFLFVALI+LAAVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLL+KNKRPASYRLSCCTMVSGPVTVQTKP
Sbjct: 1 MKSFLFVALIVLAAVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.090e-39 Identity = 80/146 (54.79%), Postives = 97/146 (66.44%), Query Frame = 1
Query: 40 AVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
+V+ + F+VAP+ V+R + + +MLFG I V VQQK FK+T + + NLRKALM I+IYPLQGKIYNCGGGGSCGTC VNV AG NCSPKGP EKKLL +P +YRLSCCT V+G +TV TKP
Sbjct: 15 SVMLAAEAFLVAPALQRPVQRDTLTP-RMLFGKKAAPAKSKG-IEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLL--GNKPETYRLSCCTKVNGNITVATKP 155
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.920e-37 Identity = 74/154 (48.05%), Postives = 94/154 (61.04%), Query Frame = 1
Query: 16 FVALILLAAVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
F +I L + ++ F+ + V+ S + +QMLFG + V+Q+ GF + +L G NLRK LM KIDIYPLQGK+ NCGGGG CGTCAV V GA N SPK P EKK+L +K+P +YRLSCCT VSG TV+TKP
Sbjct: 3 FTVVIFLVCAISGASAFLGQSLALNRVQASSSTSLQMLFGSKKKAAPVKGKYSITVKQR-GFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVL--SKKPENYRLSCCTRVSGACTVRTKP 153
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA) HSP 1 Score: 113 bits (283), Expect = 4.540e-29 Identity = 61/103 (59.22%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 175 VKVQQKTGFKETELTL--AGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
V VQQK +K EL + NLRK LM NKIDIYPLQGKIYNCGGGG CGTCA+ + GA+N +PK P E K L K+ RL+CCT SG VTV+TKP
Sbjct: 58 VTVQQKF-YKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALG-GKKGDDIRLACCTRASGDVTVKTKP 158
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1) HSP 1 Score: 108 bits (270), Expect = 9.920e-27 Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 1
Query: 232 TNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
+NLRK L++NKID+Y L+GK+ NCGGGG CGTC V++ G N +P+G E ++ E + P S+RLSCCT + GP+TV+TKP
Sbjct: 109 SNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: UPI00055BF685 ((2Fe-2S)-binding protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055BF685) HSP 1 Score: 96.7 bits (239), Expect = 4.300e-23 Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 208 TELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
TE+ A +NLR+ + N +DIY L+GK+ NCGG G C TC V++ G +N SP+ E+K L K+P SYRLSC T+V GP+TV+TKP
Sbjct: 17 TEVVAANGSNLREKALQNNVDIYKLKGKLTNCGGVGQCSTCIVDIVEGMENLSPRTDFEQKRL--GKKPDSYRLSCQTVVKGPITVRTKP 104
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: A0A835YVE2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVE2_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.800e-22 Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 235 NLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
NLRK L+DNK+D+Y K+ CGGGG+CGTC V V G +NCS KG GE+K+L+ A RL+CCT V+GPV+V KP
Sbjct: 40 NLRKLLLDNKVDLYKPLDKLKQCGGGGTCGTCRVRVTEGMENCSKKGLGEEKMLKAVG--ADIRLACCTRVTGPVSVTVKP 118
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: A0A218QTJ0_9CYAN (Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A218QTJ0_9CYAN) HSP 1 Score: 91.3 bits (225), Expect = 4.700e-21 Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 211 ELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
E+ A NLR M N IDIY GK+ NCGGGG+CGTC V + G +N SP+ E ++L+ K+P +YRL+C T+V+G V+V TKP
Sbjct: 12 EVIAANGANLRLKAMQNNIDIYKFIGKMTNCGGGGNCGTCIVEIVEGIENLSPRTDAENRILK--KKPENYRLACQTVVNGAVSVVTKP 98
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: A0A6P0JWH0_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Kamptonema sp. SIO4C4 TaxID=2607773 RepID=A0A6P0JWH0_9CYAN) HSP 1 Score: 90.1 bits (222), Expect = 1.490e-20 Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 211 ELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
++ A N+R+ + N +D+Y L+GK+ NCGG G CGTC V V G +N S + E++ L+ K+PASYRLSC T+V+GPV V+TKP
Sbjct: 15 DVVAADGANMREKALQNGVDLYTLRGKLTNCGGYGQCGTCVVEVIEGMENLSERTQFEERKLK--KKPASYRLSCQTLVNGPVKVRTKP 101
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Match: A0A1Z4LLR8_9CYAN (Ferredoxin n=1 Tax=Calothrix parasitica NIES-267 TaxID=1973488 RepID=A0A1Z4LLR8_9CYAN) HSP 1 Score: 89.7 bits (221), Expect = 1.880e-20 Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 211 ELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLEKNKRPASYRLSCCTMVSGPVTVQTKP 477
E+ A NLR M N IDIY + GK+ NCGG G CGTC V + G +N SP+ E K+L+ K+P +YRL+C +VSG V+V TKP
Sbjct: 12 EVVAADGANLRLKAMQNNIDIYKVWGKMMNCGGAGQCGTCIVEITEGIENLSPRTDVENKILK--KKPENYRLACQALVSGAVSVVTKP 98 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10978.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10978.1343.1 >prot_Ecto-sp8_S_contig10978.1343.1 ID=prot_Ecto-sp8_S_contig10978.1343.1|Name=mRNA_Ecto-sp8_S_contig10978.1343.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=160bp MKSFLFVALILLAAVLQISNGFVVAPSSSLNVRRQSHSGMQMLFGGGGAKback to top mRNA from alignment at Ecto-sp8_S_contig10978:1187..3879- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10978.1343.1 ID=mRNA_Ecto-sp8_S_contig10978.1343.1|Name=mRNA_Ecto-sp8_S_contig10978.1343.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2693bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10978:1187..3879- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10978:1187..3879- >mRNA_Ecto-sp8_S_contig10978.1343.1 ID=mRNA_Ecto-sp8_S_contig10978.1343.1|Name=mRNA_Ecto-sp8_S_contig10978.1343.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10978:1187..3879- (Ectocarpus species8 EcLAC_412)back to top |