mRNA_Ecto-sp8_S_contig10962.1331.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10962.1331.1
Unique NamemRNA_Ecto-sp8_S_contig10962.1331.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10962.1331.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.320e-48
Identity = 94/108 (87.04%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:    1 MRCPAAVLVVASAALPCARGFLRPSVVPRRRAAGADASGGSGDIMTCSRRSHTGGAAAAAFGRRSLFMMAEGRLTDGDLDNISLDPSTLDESELQRVEGIRAIQSKMV 324
            MRCPA VLVVASAALPCARGFLRPSVVPRRRAAG DASGGSGDIMTCSRRSHTGGAAAAA GRR LFMMAEGRLTDGDLDNIS          LQRVEGIRAIQSKMV
Sbjct:    1 MRCPAVVLVVASAALPCARGFLRPSVVPRRRAAGTDASGGSGDIMTCSRRSHTGGAAAAAVGRRGLFMMAEGRLTDGDLDNISXXXXXXXXXXLQRVEGIRAIQSKMV 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10962.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK66_ECTSI1.320e-4887.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10962contigEcto-sp8_S_contig10962:1291..3370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score172.2
Seed ortholog evalue1.6e-40
Seed eggNOG ortholog2880.D8LK66
Model size387
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Protein of unknown function (DUF3054)
EggNOG OGs2CM8N@1,2QPMJ@2759
Ec32 ortholog descriptionProtein of unknown function DUF3054
Ec32 orthologEc-08_002930.1
Cds size387
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143184.0481763-CDS-Ecto-sp8_S_contig10962:1290..13801681143184.0481763-CDS-Ecto-sp8_S_contig10962:1290..1380Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10962 1291..1380 -
1681143184.0607395-CDS-Ecto-sp8_S_contig10962:1719..17911681143184.0607395-CDS-Ecto-sp8_S_contig10962:1719..1791Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10962 1720..1791 -
1681143184.0726776-CDS-Ecto-sp8_S_contig10962:3145..33701681143184.0726776-CDS-Ecto-sp8_S_contig10962:3145..3370Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10962 3146..3370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10962.1331.1prot_Ecto-sp8_S_contig10962.1331.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10962 1291..3370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10962.1331.1

>prot_Ecto-sp8_S_contig10962.1331.1 ID=prot_Ecto-sp8_S_contig10962.1331.1|Name=mRNA_Ecto-sp8_S_contig10962.1331.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
MRCPAAVLVVASAALPCARGFLRPSVVPRRRAAGADASGGSGDIMTCSRR
SHTGGAAAAAFGRRSLFMMAEGRLTDGDLDNISLDPSTLDESELQRVEGI
RAIQSKMVEVDEKKLELRRAARKQKEAAQ
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mRNA from alignment at Ecto-sp8_S_contig10962:1291..3370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10962.1331.1 ID=mRNA_Ecto-sp8_S_contig10962.1331.1|Name=mRNA_Ecto-sp8_S_contig10962.1331.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2080bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10962:1291..3370- (Ectocarpus species8 EcLAC_412)
ATGCGTTGCCCTGCTGCAGTGCTCGTCGTCGCCTCCGCTGCCCTTCCGTG
CGCGAGGGGTTTCCTGCGGCCGAGTGTTGTCCCCAGGAGGCGTGCTGCTG
GAGCCGACGCCAGCGGCGGCTCCGGCGACATCATGACTTGCAGCCGGAGG
AGCCACACCGGAGGAGCTGCTGCTGCTGCTTTTGGCCGGCGGAGCCTGTT
CATGATGGCGGAAGGGAGACTCACGGTAAGAGACAGGGCGAGAGAGCGAA
AGAGCGTGCAAGCCGTTACCACCAGCCGGAGTAGTGTGCCGGTCTTTCTG
TCTTGCTCGCAAACGCGCGAGGGACATCATCCAGAAAAAGAGCGTCGGTT
CCTCGTGCATTCATGAAGTTGACATGATCTCAGATGACAACACGCTGGCC
GTCGGTTTCCCCGTGATCGCACTCTGGGTTGACGTCGATACTCTCTGCTG
ATAGCGATTTTGATGGCCAAAAGTATTTCATGGTTGTTGGTCGACCATCG
CTTGCTTGCTCTAAAATCTCTGCAATGCGGGCATTTTTTACTCCAAAATT
TGATAGGGTCGAACAAGAACTGAGAATGTGCATGTTTTTTTCAATTTCAA
GCCTTTGAAGCCGGTGTGCAATGTACTGCAGTATGCATGCATGCACACAC
GGACTGGGAAAGGCCATAGATATCAGGGGTGCTGCACACAGAATCTGTTA
GGGCCACGTACCCGGGAGACATCAGCAAGTCGTTGGCTGAGTGAAACGTC
TGTTCACCTAGTATTTGTGCAATGCCTACAAAGTTGTAGACATTGTACCA
GTCTACAGCAGTGATACCACTCCTTGATGAAACTCAAGCCAAGCGCGGAC
GGAGGGTGAGGAGGGCAAGGGAGGACGCCGGCACCTCTGTTCCCGCGGTT
TTTTGTGGAGAAAGTACTAGTGTTTGCATTCTGTGCACTCCTGTAGTCGT
TGAAGTAACACGCATGGTATTTGGAGCTTGGACATCACCTCATTGGCACT
ACAGCAGCAGGCCACTGCTTAGACTGTCTAATTTACCGTGCGGACGATTT
TTTTGGTGTAGTCTACCAGAGGTAACGGTACGTCGATCGGCAAGGCCTTC
GTGACCACGTGATGAAAGTGTCCGCACATGACCATTTGGTTCTAAATAGG
TTTGACAATTCTCAGCACTATGTCACCGATCGCTCTCACTAGGCTCCCCG
TCATTTCCTTTCGTCCCAGCGATACCTCTGGGCGCCTTTGATGCGTACAG
TACGCCTCCGTTTGACCACGGGGATGGTAAGCTACCGTCCCCCGCATCTC
AAGGACGCTTCTCCGCGACCAAGGGCACTTGAAAAACGAAATCTATGAAT
GTCCTCAACGCGTACGTAGCTGACTGTAATTTTATACACACGTTGACCGG
TGTCGTGTTTTCATCCCGCCTATTTCGGTTGTCGTTTTCTTGTACCTGTC
TGGCCGCATGCGTCCATCCGCTGCTGCTGTTGCTGCAGCTGCTTCGTTCA
TATTGACTTGTCTACTGCAACGCGCCCACGCCCGTATATACTGCGCTTGT
GATTGCCCTGCTGTGTGTTTGTCTTGAAGGATGGCGATCTGGACAACATC
AGCCTTGACCCTTCCACCCTGGACGAGAGCGAGCTCCAGAGGGTCGAAGG
GGTAAGCAAACAAACCCAGCAAAGAGAAAAACAAAGTGCGGCGAAATTTT
GCAGGCGATTGTGTGTCCGTACATGTGTGTCCGTCTGAACCCTCGATGGG
CGCCGCAACTTCAACTTTTTTCAAAATACGGCGGCAAGCGCGTGCACGGC
TGTTTGTTGGGGAGTGGGTGTGGATGTTGTTGTGGTCTGATCGTGTCAAC
GGGCTGGTCTGTGTGTCCCTAATGATGTGTGACCCTATTGCTTATGTGTA
TCCTTTCGCGCTCTCCTCGTGTTGGCTCGCCTCTCGGGATGCGACGTACG
CGTGTGCGTGTTTCTGCCAACCATGCCCCCCCCCCCCCAGATCCGTGCGA
TCCAATCGAAAATGGTGGAGGTCGACGAGAAGAAGCTGGAGCTGAGGAGA
GCAGCGAGGAAACAGAAAGAAGCGGCGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10962:1291..3370-

>mRNA_Ecto-sp8_S_contig10962.1331.1 ID=mRNA_Ecto-sp8_S_contig10962.1331.1|Name=mRNA_Ecto-sp8_S_contig10962.1331.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10962:1291..3370- (Ectocarpus species8 EcLAC_412)
ATGCGTTGCCCTGCTGCAGTGCTCGTCGTCGCCTCCGCTGCCCTTCCGTG
CGCGAGGGGTTTCCTGCGGCCGAGTGTTGTCCCCAGGAGGCGTGCTGCTG
GAGCCGACGCCAGCGGCGGCTCCGGCGACATCATGACTTGCAGCCGGAGG
AGCCACACCGGAGGAGCTGCTGCTGCTGCTTTTGGCCGGCGGAGCCTGTT
CATGATGGCGGAAGGGAGACTCACGGATGGCGATCTGGACAACATCAGCC
TTGACCCTTCCACCCTGGACGAGAGCGAGCTCCAGAGGGTCGAAGGGATC
CGTGCGATCCAATCGAAAATGGTGGAGGTCGACGAGAAGAAGCTGGAGCT
GAGGAGAGCAGCGAGGAAACAGAAAGAAGCGGCGCAG
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