mRNA_Ecto-sp8_S_contig10837.1224.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10837.1224.1
Unique NamemRNA_Ecto-sp8_S_contig10837.1224.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: D7G6J3_ECTSI (Similar to ring finger protein 167 isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J3_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 4.650e-90
Identity = 143/156 (91.67%), Postives = 145/156 (92.95%), Query Frame = 1 
Query:    4 GDGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLLGSSAAPVRSLRRWLRNHERGPGAAVAQTAPPGGPTGGGVEMGSGGATSGVLSEPVVATTSGLVDXXXXXXXXGVDVAADGRDADRPRAAS 471
            G+GVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGL+GSSA PVRSLRRWLRNHERGPGA VAQTAPPGGPTGG VEMGSGGATSGVLSEPVVA TSGLV    XXX  GVDVAADG DADRPRAAS
Sbjct:  145 GEGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLVGSSAVPVRSLRRWLRNHERGPGAVVAQTAPPGGPTGGEVEMGSGGATSGVLSEPVVARTSGLVGGGSXXXFGGVDVAADGGDADRPRAAS 300
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A6H5JXB7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXB7_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 3.680e-80
Identity = 136/158 (86.08%), Postives = 139/158 (87.97%), Query Frame = 1 
Query:    4 GDGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLLGSSAAPVRSLRRWLRNHERGPGAAVAQTAPPGGPTGGGVEMGSGGATSGVLSEPVVATTSGLVDXXXXXXXXGVDVAADGRDADRPRAASPG 477
            G+GVEEEA CAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESK G LGSSAAP RS+RRWLRNHERGPGAAVAQTAP GGP GGGVEMGSGG T GVLSEPVVA+ SGLV     XXXX V VAADG D DRPRAAS G
Sbjct:  347 GEGVEEEAMCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKVGPLGSSAAPFRSVRRWLRNHERGPGAAVAQTAPSGGPPGGGVEMGSGGETGGVLSEPVVASMSGLVGDGSGXXXXXVGVAADGGDPDRPRAASLG 504
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A7S3V245_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V245_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.010e-13
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   19 EEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLLGSSAAPVRSLRRWLRNHERGP 264
            E  TCAIC+C+ E+G  +R+LPC H+FHA C+DVWL ++  CP CK+ +     + K  +      PV  +  + R   R P
Sbjct:  632 ESDTCAICICDYEEGDQVRLLPCQHYFHAECIDVWLRKNKACPMCKRDIVEGLEQGKEVVQSGVIVPVADMAPYNRRRRRRP 713
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A5J9V0K8_9POAL (RING-type domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V0K8_9POAL)

HSP 1 Score: 75.9 bits (185), Expect = 3.420e-13
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 EEEATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLLGSSAAPV 222
            ++EA CA+CL + EDG+  R LP CGH FHAGCVD+WLA   TCP C+  +  P     A  L  +  PV
Sbjct:  135 DDEAKCAVCLAKLEDGEAARFLPRCGHGFHAGCVDMWLASHTTCPLCRLTIAKPDVTLPASALAPALPPV 204
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A5J9V187_9POAL (RING-type domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V187_9POAL)

HSP 1 Score: 75.9 bits (185), Expect = 5.100e-13
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   16 EEEATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLLGSSAAPV 222
            ++EA CA+CL + EDG+  R LP CGH FHAGCVD+WLA   TCP C+  +  P     A  L  +  PV
Sbjct:  183 DDEAKCAVCLAKLEDGEAARFLPRCGHGFHAGCVDMWLASHTTCPLCRLTIAKPDVTLPASALAPALPPV 252
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A7S2V3V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3V2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.680e-12
Identity = 40/90 (44.44%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 GGDGVEEEATCAICLCEEEDGQDLRVLPCGHF-FHAGCVDVWLAQSPTCPFCKQPVEPPSTESKAGLLGSSAAPVRSLRRWLRNHERGPG 267
            G D VE+E  C ICL   E+G+++RVL CGH  +H  C+D WL Q   CP CK  VEPPS    +    SS+ P R+LR  +      PG
Sbjct:   20 GDDSVEDEE-CPICLVPLEEGEEVRVLKCGHCSYHMSCLDAWLHQRAWCPLCKAKVEPPSPPHASS---SSSPPGRTLRPSVNTITATPG 105
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A835TAK0_CHLIN (RING-type domain-containing protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TAK0_CHLIN)

HSP 1 Score: 75.5 bits (184), Expect = 1.800e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 DGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPV 165
            DGV+   TCAICLCE EDG+ ++ LPC HF+H  C+D WL +  TCP CK  V
Sbjct: 1843 DGVDAADTCAICLCEFEDGERVKHLPCKHFYHIACIDTWLGRDITCPLCKDNV 1895
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A2H2HU33_CAEJA (RING-type domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2HU33_CAEJA)

HSP 1 Score: 75.1 bits (183), Expect = 1.830e-12
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    7 DGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPVE 168
            DG EEE TC +CLC  EDG+++R LPC HFFH  C+D WL  +  CP C++ ++
Sbjct:  397 DGEEEEETCTVCLCGYEDGENVRKLPCKHFFHPNCIDKWLDINKRCPMCREEID 450
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 2.150e-12
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   10 GVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPFCKQPV 165
            G   +  C ICLCE   G++LRVLPC H FHA CVD WL Q+P+CP C+  V
Sbjct:   40 GNSRQCDCRICLCEYTAGEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Match: UPI0010AA4F3E (probable E3 ubiquitin-protein ligase ATL45 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AA4F3E)

HSP 1 Score: 70.9 bits (172), Expect = 2.650e-12
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   22 EATCAICLCEEEDGQDLRVLP-CGHFFHAGCVDVWLAQSPTCPFCK 156
            E TCA+CLCE  DG+++RVLP C H FH GC+D+WL+    CP C+
Sbjct:   55 EGTCAVCLCEFTDGEEIRVLPECAHLFHVGCIDMWLSSHSNCPLCR 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10837.1224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6J3_ECTSI4.650e-9091.67Similar to ring finger protein 167 isoform 1 n=1 T... [more]
A0A6H5JXB7_9PHAE3.680e-8086.08RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3V245_9STRA1.010e-1339.02Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A5J9V0K8_9POAL3.420e-1348.57RING-type domain-containing protein (Fragment) n=1... [more]
A0A5J9V187_9POAL5.100e-1348.57RING-type domain-containing protein (Fragment) n=1... [more]
A0A7S2V3V2_9STRA1.680e-1244.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835TAK0_CHLIN1.800e-1256.60RING-type domain-containing protein n=2 Tax=Chlamy... [more]
A0A2H2HU33_CAEJA1.830e-1251.85RING-type domain-containing protein n=1 Tax=Caenor... [more]
A0A8C3ZMD8_9TELE2.150e-1255.77RING-type domain-containing protein n=1 Tax=Dentic... [more]
UPI0010AA4F3E2.650e-1256.52probable E3 ubiquitin-protein ligase ATL45 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10837contigEcto-sp8_S_contig10837:5704..6274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score283.5
Seed ortholog evalue7.3e-74
Seed eggNOG ortholog2880.D7G6J3
Model size572
KEGG koko:K13148,ko:K19041
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0030163,GO:0031090,GO:0032182,GO:0032183,GO:0032184,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051603,GO:0061458,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons1
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
Cds size570
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143176.1205602-CDS-Ecto-sp8_S_contig10837:5703..62731681143176.1205602-CDS-Ecto-sp8_S_contig10837:5703..6273Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10837 5704..6273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10837.1224.1prot_Ecto-sp8_S_contig10837.1224.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10837 5704..6273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10837.1224.1

>prot_Ecto-sp8_S_contig10837.1224.1 ID=prot_Ecto-sp8_S_contig10837.1224.1|Name=mRNA_Ecto-sp8_S_contig10837.1224.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=190bp
GGDGVEEEATCAICLCEEEDGQDLRVLPCGHFFHAGCVDVWLAQSPTCPF
CKQPVEPPSTESKAGLLGSSAAPVRSLRRWLRNHERGPGAAVAQTAPPGG
PTGGGVEMGSGGATSGVLSEPVVATTSGLVDGGSGGGSGGVDVAADGRDA
DRPRAASPGGGSSSEEVVTLEEQEEVEEEEEQGQGEPPAA
back to top

mRNA from alignment at Ecto-sp8_S_contig10837:5704..6274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10837.1224.1 ID=mRNA_Ecto-sp8_S_contig10837.1224.1|Name=mRNA_Ecto-sp8_S_contig10837.1224.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=571bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10837:5704..6274+ (Ectocarpus species8 EcLAC_412)
GGAGGGGACGGGGTGGAAGAGGAGGCGACGTGCGCGATCTGCCTATGCGA
GGAGGAAGACGGGCAGGACCTGAGGGTGCTGCCGTGCGGACACTTCTTCC
ACGCCGGCTGCGTCGACGTCTGGCTGGCGCAGAGCCCGACGTGCCCGTTC
TGTAAGCAGCCCGTCGAGCCGCCCTCTACCGAGAGCAAGGCCGGCCTCCT
CGGCTCGTCCGCGGCGCCGGTCAGAAGCTTGCGCCGGTGGCTCCGGAATC
ACGAGCGGGGACCGGGGGCTGCGGTGGCTCAGACGGCACCCCCGGGGGGT
CCAACGGGCGGGGGAGTTGAAATGGGCAGCGGCGGTGCAACGAGCGGGGT
TCTCTCTGAGCCCGTGGTTGCGACGACGAGCGGGCTCGTGGACGGTGGTT
CCGGCGGTGGTTCCGGCGGTGTCGATGTTGCCGCTGACGGAAGGGACGCC
GACAGACCCCGAGCGGCGTCACCGGGCGGCGGCTCGTCATCTGAAGAGGT
CGTTACGTTGGAGGAGCAGGAGGAAGTGGAGGAGGAGGAGGAGCAAGGGC
AAGGAGAGCCTCCGGCGGCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10837:5704..6274+

>mRNA_Ecto-sp8_S_contig10837.1224.1 ID=mRNA_Ecto-sp8_S_contig10837.1224.1|Name=mRNA_Ecto-sp8_S_contig10837.1224.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10837:5704..6274+ (Ectocarpus species8 EcLAC_412)
GGAGGGGACGGGGTGGAAGAGGAGGCGACGTGCGCGATCTGCCTATGCGA
GGAGGAAGACGGGCAGGACCTGAGGGTGCTGCCGTGCGGACACTTCTTCC
ACGCCGGCTGCGTCGACGTCTGGCTGGCGCAGAGCCCGACGTGCCCGTTC
TGTAAGCAGCCCGTCGAGCCGCCCTCTACCGAGAGCAAGGCCGGCCTCCT
CGGCTCGTCCGCGGCGCCGGTCAGAAGCTTGCGCCGGTGGCTCCGGAATC
ACGAGCGGGGACCGGGGGCTGCGGTGGCTCAGACGGCACCCCCGGGGGGT
CCAACGGGCGGGGGAGTTGAAATGGGCAGCGGCGGTGCAACGAGCGGGGT
TCTCTCTGAGCCCGTGGTTGCGACGACGAGCGGGCTCGTGGACGGTGGTT
CCGGCGGTGGTTCCGGCGGTGTCGATGTTGCCGCTGACGGAAGGGACGCC
GACAGACCCCGAGCGGCGTCACCGGGCGGCGGCTCGTCATCTGAAGAGGT
CGTTACGTTGGAGGAGCAGGAGGAAGTGGAGGAGGAGGAGGAGCAAGGGC
AAGGAGAGCCTCCGGCGGCG
back to top