mRNA_Ecto-sp8_S_contig10814.1200.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10814.1200.1
Unique NamemRNA_Ecto-sp8_S_contig10814.1200.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10814.1200.1 vs. uniprot
Match: D7FPP2_ECTSI (Ankyrin repeat domain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP2_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 6.170e-79
Identity = 132/174 (75.86%), Postives = 137/174 (78.74%), Query Frame = 1 
Query:    1 MMERSCRNGSNVEERDDEDAKHVAFLRARVVEAAREGDTPEMKYLMGITAAKRLLAATDESSRWGLLHFSCSRGFLDITTMLLEAGAKALKAVDKHGKTCLHVAIEHDCRDVIELLLDWHPVCDWPRRAKLTLGQTAARAGGHA-TMQLLLRNGLDPNEKGI-RRETPLHQAAR 516
            MMERSCRNGSNVEE DDEDAKHVAFLRARVVEAAREGDTPEMKYLMGITAAKRLLAATDESSRWGLLHFSCSRGFLDITTMLLEAG KALKAVDKHGKTCLHVAIEHDCRDVIELLLDWH                     GHA  ++LLLR+G D   +      TPLH A +
Sbjct:    1 MMERSCRNGSNVEESDDEDAKHVAFLRARVVEAAREGDTPEMKYLMGITAAKRLLAATDESSRWGLLHFSCSRGFLDITTMLLEAGTKALKAVDKHGKTCLHVAIEHDCRDVIELLLDWH---------------------GHAEVIELLLRHGADVTAREAWAGRTPLHYACQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10814.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPP2_ECTSI6.170e-7975.86Ankyrin repeat domain 3 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10814contigEcto-sp8_S_contig10814:4595..6581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score250.4
Seed ortholog evalue6.3e-64
Seed eggNOG ortholog2880.D7FPP2
Model size525
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size525
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143174.6879504-CDS-Ecto-sp8_S_contig10814:4594..47741681143174.6879504-CDS-Ecto-sp8_S_contig10814:4594..4774Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10814 4595..4774 +
1681143174.6976948-CDS-Ecto-sp8_S_contig10814:5373..54781681143174.6976948-CDS-Ecto-sp8_S_contig10814:5373..5478Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10814 5374..5478 +
1681143174.7093573-CDS-Ecto-sp8_S_contig10814:5972..60431681143174.7093573-CDS-Ecto-sp8_S_contig10814:5972..6043Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10814 5973..6043 +
1681143174.7168891-CDS-Ecto-sp8_S_contig10814:6412..65811681143174.7168891-CDS-Ecto-sp8_S_contig10814:6412..6581Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10814 6413..6581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10814.1200.1prot_Ecto-sp8_S_contig10814.1200.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10814 4595..6581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10814.1200.1

>prot_Ecto-sp8_S_contig10814.1200.1 ID=prot_Ecto-sp8_S_contig10814.1200.1|Name=mRNA_Ecto-sp8_S_contig10814.1200.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=175bp
MMERSCRNGSNVEERDDEDAKHVAFLRARVVEAAREGDTPEMKYLMGITA
AKRLLAATDESSRWGLLHFSCSRGFLDITTMLLEAGAKALKAVDKHGKTC
LHVAIEHDCRDVIELLLDWHPVCDWPRRAKLTLGQTAARAGGHATMQLLL
RNGLDPNEKGIRRETPLHQAARWH*
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mRNA from alignment at Ecto-sp8_S_contig10814:4595..6581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10814.1200.1 ID=mRNA_Ecto-sp8_S_contig10814.1200.1|Name=mRNA_Ecto-sp8_S_contig10814.1200.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1987bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10814:4595..6581+ (Ectocarpus species8 EcLAC_412)
ATGATGGAGCGTTCCTGCCGCAATGGCAGCAATGTTGAGGAGCGTGACGA
CGAGGATGCCAAACACGTAGCATTCCTGAGAGCAAGGGTTGTCGAAGCGG
CTCGCGAGGGAGATACGCCAGAGATGAAGTACCTGATGGGCATCACGGCA
GCCAAAAGGCTCCTGGCTGCTACTGATGAGGTGACTTAATTACTGCTCTA
GCAAGCAGTCCCAGAAGAGAAATACTTGTACATGCTGATGAAACGTACAT
AGGCGCTTGTGCTTTCCCCTGTGAACTTAGAAGAAAACGTTGCCCACATA
ACCAATCGTGTGTTTGCAGCACTACGTAGTCTACAGCCTGTCGACTCTCC
TGGTGGCCAGAGGGGCAGGTTGGGCACCATCCACAACCTGGGGGGGGGGA
GGTTGGGAGGCTGATTTCGACCTTGAACTCATTTTTCTTCAGGCTTGCAG
CCCACCGTGTTGATTGGAATAACGCCACTATCCGACATGTGGGATAACTT
GCACGCTTTGGGCTGCAACCTCCGTGCAACCTCCCCCCCCCAGCTTGTAG
TCGGTGCCCCAGCCTACATCTTCTCGACGCGCAGACTTGGTCCAGTTTCA
CCCTTTCACCCCCTATAGTGAGGCCAACGGACTCAAGCATTGATGCAGAT
GTATGCAACGTGAATAATATACATAGACTACATACGTCAAAGAAGAATAT
AATGTCGACCTCTTGTATTTTTTTATGCCGAAAAATGTCGTCGCTTGTGT
CTGTCCGCAAACCGCAACAACGCGGTCAGAGCTCGCGGTGGGGCTTGTTA
CACTTCAGCTGCAGCCGGGGCTTTCTGGATATCACGACTATGTTGTTGGA
AGCGGGAGCTAAAGCTCTGAAAGCGGTCGACAAGGTGAGCCTGTAAAGTT
GGGGTTCAAGAACATGCGACTACCGTGGGCGTTTACCCAAAAGGCAGAGA
TCCGTATTCCAAATGTCGTGCTAAATAATAGGGGAATGCTTCAGTACGAC
CCCAGACCGGAGAACTCTCCAGCTTTTGAGGCCAGGCCGTAGGCTAGCCA
GAAGCTGAGAGCGACGGTGATAACTTGTTGGTCGCCTAGAACACCATGCA
ATTTTATATCTATCTCCAGATTATCTGTCCGTGAACTTTTGTATCGCTCG
TGTGAATTCTATCGGCAATAGTTTGATGAAAAGTACGGGAACACAAATAA
GTATTCCGGAGAACAGAAGGTACAATATTTTTTGGTTCAGAATCACAGCT
CAGTGGAAATTTAGAGGGTCTATGGTGTTGGCGACGCGGACGGCACACAA
CATGTAAACTCTACCGAAACAACTGGTAACTGTCGAACCGAGGCCCCGCT
TGCTCGTGATACCTTGAAACATTGCTAGCACGGCAAGACCTGCCTCCATG
TCGCTATAGAGCACGACTGCAGGGACGTCATAGAGCTCCTGCTGGACTGG
TGAGGAAAACTCCGGGTTTTTTGGTGCTTATGTTGCGAAGAGAATCTCCT
GATTGAATGAGCTACGTGATGTAATTCGAGCTCAACGAATGGCCACGCAG
AATGCGGTGGCATGGGCAAGTGAGAGGGGGAAAGCCCTGGTAATTCGAAG
ATAACACATACCACCCGTAGATACTTCGATGATCGCGATATTATCTAGAT
TATACTCAAGACCGCCTTGGAGGCATTGCTACACAAGACGCTATTCCCGA
GACAGGTTAACACTCTGCCAGCCATGTTCGTGTGCTGGACAATATATGGG
AAAAGAAATTCACCCACAAGGCAGTAGTTCAGCCCAGACACTTGATTTGG
CGCGTCCAACTGTTGCAGGCACCCGGTTTGTGACTGGCCAAGACGAGCAA
AGCTCACGCTGGGCCAGACGGCCGCGCGAGCAGGAGGTCACGCCACCATG
CAGCTGCTCCTGCGAAACGGTCTTGACCCAAACGAGAAAGGGATAAGGAG
AGAAACACCCCTGCACCAAGCGGCTAGGTGGCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10814:4595..6581+

>mRNA_Ecto-sp8_S_contig10814.1200.1 ID=mRNA_Ecto-sp8_S_contig10814.1200.1|Name=mRNA_Ecto-sp8_S_contig10814.1200.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10814:4595..6581+ (Ectocarpus species8 EcLAC_412)
ATGATGGAGCGTTCCTGCCGCAATGGCAGCAATGTTGAGGAGCGTGACGA
CGAGGATGCCAAACACGTAGCATTCCTGAGAGCAAGGGTTGTCGAAGCGG
CTCGCGAGGGAGATACGCCAGAGATGAAGTACCTGATGGGCATCACGGCA
GCCAAAAGGCTCCTGGCTGCTACTGATGAGAGCTCGCGGTGGGGCTTGTT
ACACTTCAGCTGCAGCCGGGGCTTTCTGGATATCACGACTATGTTGTTGG
AAGCGGGAGCTAAAGCTCTGAAAGCGGTCGACAAGCACGGCAAGACCTGC
CTCCATGTCGCTATAGAGCACGACTGCAGGGACGTCATAGAGCTCCTGCT
GGACTGGCACCCGGTTTGTGACTGGCCAAGACGAGCAAAGCTCACGCTGG
GCCAGACGGCCGCGCGAGCAGGAGGTCACGCCACCATGCAGCTGCTCCTG
CGAAACGGTCTTGACCCAAACGAGAAAGGGATAAGGAGAGAAACACCCCT
GCACCAAGCGGCTAGGTGGCACTGA
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