mRNA_Ecto-sp8_S_contig10775.1156.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10775.1156.1
Unique NamemRNA_Ecto-sp8_S_contig10775.1156.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10775.1156.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.270e-37
Identity = 165/317 (52.05%), Postives = 170/317 (53.63%), Query Frame = 1 
Query:    1 AAAAAKPATTATATKPSTLTADAKQWTGGKALGGGKPGXXXXXXXXXXXXTTAXAPAAPANXXXXXXAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ELXGGAGGAVTLVQLQQQQLVLQQ----QMQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAHEQSLGQRVQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGPMPQPRAQHDFRGSPKGGGYPTAGPPASAVMSPVPTQGLAGAMQLARDGSPMPPLPHPSGSPPILVGQSMPG 933
            AAA AKPAT ATATKPSTLTADAKQWTG KALG GKPG    XXXXXXXX   X       XXXXXX   XXXXXXXXXXXXXXXX                              EL GG+G AVTL QLQQQQLVLQ+    Q Q+A XX                             Q L Q++                  XXXX                                 AGPMPQP AQHD RGSPK GGYPTAGPP SAVMSPVPTQGLAGAMQLARDGSPMPPLPH SGSPPILVGQSMPG
Sbjct:  559 AAAVAKPATAATATKPSTLTADAKQWTGSKALGAGKPGAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGEPNETVGATVPGFTPTAAGTAMAGGQAELAGGSGTAVTLAQLQQQQLVLQRAQLIQAQQAQXXAL-------------------------RNQQLQQQLTHSPPPPRGHGLNPAPPAXXXX---------------------------------AGPMPQPLAQHDVRGSPKVGGYPTAGPPVSAVMSPVPTQGLAGAMQLARDGSPMPPLPHASGSPPILVGQSMPG 817
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10775.1156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE3.270e-3752.05Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10775contigEcto-sp8_S_contig10775:3905..5918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size935
Hectar predicted targeting categoryother localisation
Exons3
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143171.5912988-CDS-Ecto-sp8_S_contig10775:3904..43151681143171.5912988-CDS-Ecto-sp8_S_contig10775:3904..4315Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10775 3905..4315 +
1681143171.6004403-CDS-Ecto-sp8_S_contig10775:4690..47711681143171.6004403-CDS-Ecto-sp8_S_contig10775:4690..4771Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10775 4691..4771 +
1681143171.60941-CDS-Ecto-sp8_S_contig10775:5476..59171681143171.60941-CDS-Ecto-sp8_S_contig10775:5476..5917Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10775 5477..5917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10775.1156.1prot_Ecto-sp8_S_contig10775.1156.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10775 3905..5917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10775.1156.1

>prot_Ecto-sp8_S_contig10775.1156.1 ID=prot_Ecto-sp8_S_contig10775.1156.1|Name=mRNA_Ecto-sp8_S_contig10775.1156.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=311bp
AAAAAKPATTATATKPSTLTADAKQWTGGKALGGGKPGAAAAAASTAAAA
TTAAAPAAPANAATTATAVAAKSAAAVSTATATVAGGQSNGATAATVPGF
TPTAAGAAMAGGQAELAGGAGGAVTLVQLQQQQLVLQQQMQRAQLIQAQQ
AQQQALRNQQLQQQEELFRGQLAHEQSLGQRVQQQQQQQEPQKHNGDQPG
NNTQEQQQRQRQQQQLTHSPPPPRGHVLNPPPAATAAAGPMPQPRAQHDF
RGSPKGGGYPTAGPPASAVMSPVPTQGLAGAMQLARDGSPMPPLPHPSGS
PPILVGQSMPG
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mRNA from alignment at Ecto-sp8_S_contig10775:3905..5918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10775.1156.1 ID=mRNA_Ecto-sp8_S_contig10775.1156.1|Name=mRNA_Ecto-sp8_S_contig10775.1156.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2014bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10775:3905..5918+ (Ectocarpus species8 EcLAC_412)
GCCGCGGCGGCGGCTAAACCGGCGACGACGGCAACGGCAACGAAGCCCTC
CACCTTGACGGCGGATGCGAAGCAGTGGACCGGCGGCAAGGCTCTAGGCG
GCGGCAAGCCAGGCGCCGCCGCCGCCGCCGCCTCCACCGCTGCCGCCGCT
ACTACTGCCGCTGCCCCCGCCGCTCCTGCGAACGCCGCCACCACAGCCAC
CGCTGTTGCGGCGAAATCGGCGGCGGCTGTCTCTACAGCGACAGCGACGG
TAGCGGGTGGACAGTCGAACGGAGCGACGGCGGCGACTGTACCTGGGTTC
ACTCCGACGGCTGCCGGAGCCGCGATGGCGGGGGGGCAGGCGGAGCTGGC
CGGCGGCGCGGGCGGCGCGGTGACGCTGGTGCAGCTACAGCAGCAGCAAC
TCGTGCTACAGGTGTGTATGTGCCGTGTGTATCGCGCTTGTTGTGGGGGC
ACGAGAAGGGACGGGGGGCTCAGTGGGTTCATAACGTGCGGAGGGGGTTG
GTTCTGTTCTTGTTGGTTTGTGGTTTCTTGGTTCAGTTTTTTTTGTTTTT
CGATGCTCCCGAGTCCAACCAAGAAAAAGTTGGTGCCCTGCTGTACTGCT
TTAGATTAGGTTTGAGATAACAATTTTAATTCGCAGAGCCTGCCCGTGTG
ATAGGAACGCTGGCACGTCTCTCTTACGCCGGGTGGAATCGCCGCTGTCA
CGATCTTTTGCGCTAATGGCGCCTCCCCGCCGTTCCATCCCCCCCCCCCC
GACCCTACCGCTGCTGTCCCGTTGCCACGACATCAGCAACAAATGCAGCG
AGCCCAGCTGATCCAAGCGCAGCAAGCGCAGCAGCAGGCTTTGAGGAATC
AACAACTGCAGCAACAGGTGAGTCGATTCGATCAATTTTCGTTTTACTTT
GCATCGGCTTTGGCCCCGGTTCGCTATCTAGGGTCCTAGGTTTGGCCTCC
TCCCAAAAGCTTATGTTTTGTGATCGGCATTTTCGCATTTTCGCACCGAC
GAGATCATTTAGTCCTGATAAGGGTGACGTTCGAAAACCTAGTGGGTGGT
TATGTATTTTAGCATTCTCTTCGGTACAGGTATACGTAGGAGCTTTGGAA
ATTGGTTCGGGGAGAGAGAAGGTTAGGGGAGCAACTCTGACGTCGGTCAG
TGCTGTATGCTGACCCTGCGCGTGCTGCTTGTTTCTGTCTGGACAATTGA
TTGCTGTGACGGAGGTGGAGGCCTTGGTTGCCTGTTTTCGTGTGTGCATG
CCCCTGCTGTTCCTCCTCGCGTTTCCCTGGACCACAGACAGTGCCTCCGC
TTTTTCAAAGAGACTGGGAGTTGGTGAAGAAAGACAGGCTCAAAAGAGAG
ATAAAAATCAAGAATTTGACGAGAACGGGGGCTTGGGTTAAGAGCCCTAT
GCTTAAAAGGCCTCTGTATATAGTCGATGTGGGGTTACCCCGGAGAGGAA
CATGAGCAACGATCCTCGCGCACAGTCAGAGGTTCTTGAGTGGTGTTGCT
GTCGCGATGGGAGACCTGAAACGTTTGCGTCTGGTCTTTATCGCCGCCGT
GACGCCAATCAAAAACAAACAGGAGGAGCTCTTCCGGGGCCAGCTAGCGC
ACGAGCAAAGCTTGGGGCAGAGGGTGCAGCAGCAGCAACAACAACAGGAG
CCCCAAAAGCACAACGGCGACCAGCCCGGCAACAACACGCAAGAGCAGCA
GCAGCGGCAGCGGCAACAACAGCAGTTGACCCATTCGCCGCCCCCGCCTC
GCGGGCACGTCCTCAACCCCCCCCCCGCCGCCACCGCCGCCGCCGGCCCG
ATGCCCCAGCCCCGGGCGCAGCACGACTTCCGCGGGAGCCCCAAGGGTGG
GGGGTACCCAACCGCGGGCCCCCCAGCCTCCGCGGTGATGTCCCCCGTTC
CGACTCAGGGGCTGGCGGGAGCGATGCAGCTCGCGAGGGACGGGTCGCCG
ATGCCACCACTGCCTCACCCCAGCGGGTCTCCTCCGATCCTGGTGGGGCA
GAGCATGCCCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10775:3905..5918+

>mRNA_Ecto-sp8_S_contig10775.1156.1 ID=mRNA_Ecto-sp8_S_contig10775.1156.1|Name=mRNA_Ecto-sp8_S_contig10775.1156.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10775:3905..5918+ (Ectocarpus species8 EcLAC_412)
GCCGCGGCGGCGGCTAAACCGGCGACGACGGCAACGGCAACGAAGCCCTC
CACCTTGACGGCGGATGCGAAGCAGTGGACCGGCGGCAAGGCTCTAGGCG
GCGGCAAGCCAGGCGCCGCCGCCGCCGCCGCCTCCACCGCTGCCGCCGCT
ACTACTGCCGCTGCCCCCGCCGCTCCTGCGAACGCCGCCACCACAGCCAC
CGCTGTTGCGGCGAAATCGGCGGCGGCTGTCTCTACAGCGACAGCGACGG
TAGCGGGTGGACAGTCGAACGGAGCGACGGCGGCGACTGTACCTGGGTTC
ACTCCGACGGCTGCCGGAGCCGCGATGGCGGGGGGGCAGGCGGAGCTGGC
CGGCGGCGCGGGCGGCGCGGTGACGCTGGTGCAGCTACAGCAGCAGCAAC
TCGTGCTACAGCAACAAATGCAGCGAGCCCAGCTGATCCAAGCGCAGCAA
GCGCAGCAGCAGGCTTTGAGGAATCAACAACTGCAGCAACAGGAGGAGCT
CTTCCGGGGCCAGCTAGCGCACGAGCAAAGCTTGGGGCAGAGGGTGCAGC
AGCAGCAACAACAACAGGAGCCCCAAAAGCACAACGGCGACCAGCCCGGC
AACAACACGCAAGAGCAGCAGCAGCGGCAGCGGCAACAACAGCAGTTGAC
CCATTCGCCGCCCCCGCCTCGCGGGCACGTCCTCAACCCCCCCCCCGCCG
CCACCGCCGCCGCCGGCCCGATGCCCCAGCCCCGGGCGCAGCACGACTTC
CGCGGGAGCCCCAAGGGTGGGGGGTACCCAACCGCGGGCCCCCCAGCCTC
CGCGGTGATGTCCCCCGTTCCGACTCAGGGGCTGGCGGGAGCGATGCAGC
TCGCGAGGGACGGGTCGCCGATGCCACCACTGCCTCACCCCAGCGGGTCT
CCTCCGATCCTGGTGGGGCAGAGCATGCCCGGG
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