mRNA_Ecto-sp8_S_contig10759.1141.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10759.1141.1
Unique NamemRNA_Ecto-sp8_S_contig10759.1141.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.840e-54
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    1 FKSAAAALRMLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVSETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLRTRGRHL 315
            FKSAAAALRMLGTQITDIEQLKDLRKNDPER+RG+GDGAMKELTAF AEGKGK+R PVS  DPPA EACLKLFQEVGWVGAVKA+QLYDKGMRSIEDLRT GR L
Sbjct:  320 FKSAAAALRMLGTQITDIEQLKDLRKNDPERVRGVGDGAMKELTAFLAEGKGKSRAPVSGADPPAPEACLKLFQEVGWVGAVKARQLYDKGMRSIEDLRTSGRDL 424
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BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Match: D7G2F8_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F8_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.720e-35
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 FKSAAAALRMLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVSETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLRTRGRHL 315
            FK+AA  LR LG QIT+I+QLKDLRK++P+R+RG+GD  MKEL+ F+ EG+   R    E DP     CLK+ QEVGWVGAVKAQQLYDKG+RSIEDLRT+G HL
Sbjct:   64 FKNAAGVLRRLGVQITNIQQLKDLRKHEPQRVRGLGDSVMKELSTFYEEGR-MHRLDGLEADPKLK--CLKILQEVGWVGAVKAQQLYDKGVRSIEDLRTKGLHL 165
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BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.340e-34
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 FKSAAAALRMLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVSETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLRTRGRHL 315
            FK+AA  L+ LG QIT+I+QLKDLRK++P+R+RG+GD  MKEL  F+ EG+   R    E DP     CLK+FQEVGWVGAVKAQQLYD+G+RSIEDLRT+G HL
Sbjct:  540 FKNAAGVLKRLGVQITNIQQLKDLRKHEPQRVRGLGDSVMKELATFYEEGR-MYRLDELEADPKLK--CLKIFQEVGWVGAVKAQQLYDQGIRSIEDLRTKGLHL 641
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BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 7.220e-31
Identity = 67/105 (63.81%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 FKSAAAALRMLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVSETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLRTRGRHL 315
            FKSAAA LRMLGTQITDIEQLK+  +                   F    + + R PVSE DPP +EACLKLFQEVGWVGAVK QQLYDKGMRSIE+LRTRGRHL
Sbjct:  295 FKSAAATLRMLGTQITDIEQLKETSERGSR--------------PFLPRARAR-RSPVSEVDPPTVEACLKLFQEVGWVGAVKTQQLYDKGMRSIENLRTRGRHL 384
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BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Match: J9HWK2_9SPIT (DNA polymerase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HWK2_9SPIT)

HSP 1 Score: 59.7 bits (143), Expect = 3.440e-8
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:    1 FKSAAAALRMLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVSETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLR 297
            +K A   +R +   I  ++QLKD        +  IG+G +K+L  + AEG  K R    +TD       L+LF++V  +G  KAQ+L+DK MRSIEDLR
Sbjct:  137 YKRAVTQVRSIKEPIYSLDQLKD--------VPNIGEGILKKLREYVAEGSIK-RFEFIDTDEKIKT--LQLFEQVWGIGPSKAQELWDKKMRSIEDLR 224
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BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Match: A0A077ZZ96_STYLE (DNA polymerase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZZ96_STYLE)

HSP 1 Score: 51.6 bits (122), Expect = 2.440e-5
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:    1 FKSAAAALRMLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVSETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLRTRGRHL 315
            +K A  +L++    I +I+Q+        +++  IGDG  K++  F  +G  K        D       LKL + V  +G   AQ+LYDK +R+IEDLR + +HL
Sbjct:  241 YKRALTSLKLFNEPIYNIDQI--------DKVPNIGDGIRKKIKEFIDDGIIKR---FEFIDTDEKHNTLKLIESVWGIGPKNAQKLYDKKIRTIEDLR-KNQHL 333
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10759.1141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2F7_ECTSI1.840e-5489.52DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
D7G2F8_ECTSI2.720e-3564.76DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JHQ3_9PHAE4.340e-3463.81DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JQ91_9PHAE7.220e-3163.81DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
J9HWK2_9SPIT3.440e-839.39DNA polymerase n=1 Tax=Oxytricha trifallax TaxID=1... [more]
A0A077ZZ96_STYLE2.440e-532.38DNA polymerase n=1 Tax=Stylonychia lemnae TaxID=59... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10759contigEcto-sp8_S_contig10759:5182..6080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score174.9
Seed ortholog evalue1.9e-41
Seed eggNOG ortholog2880.D7G2F7
Preferred namePOLB
Model size316
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
Exons2
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
Cds size288
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.3867579-UTR-Ecto-sp8_S_contig10759:5181..52081681143170.3867579-UTR-Ecto-sp8_S_contig10759:5181..5208Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10759 5182..5208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143170.3989856-CDS-Ecto-sp8_S_contig10759:5208..52471681143170.3989856-CDS-Ecto-sp8_S_contig10759:5208..5247Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10759 5209..5247 +
1681143170.4082026-CDS-Ecto-sp8_S_contig10759:5831..60801681143170.4082026-CDS-Ecto-sp8_S_contig10759:5831..6080Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10759 5832..6080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10759.1141.1prot_Ecto-sp8_S_contig10759.1141.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10759 5209..6080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10759.1141.1

>prot_Ecto-sp8_S_contig10759.1141.1 ID=prot_Ecto-sp8_S_contig10759.1141.1|Name=mRNA_Ecto-sp8_S_contig10759.1141.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
MLGTQITDIEQLKDLRKNDPERLRGIGDGAMKELTAFFAEGKGKARPPVS
ETDPPALEACLKLFQEVGWVGAVKAQQLYDKGMRSIEDLRTRGRHL
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mRNA from alignment at Ecto-sp8_S_contig10759:5182..6080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10759.1141.1 ID=mRNA_Ecto-sp8_S_contig10759.1141.1|Name=mRNA_Ecto-sp8_S_contig10759.1141.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=899bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10759:5182..6080+ (Ectocarpus species8 EcLAC_412)
TTCAAGAGCGCCGCAGCGGCGCTCAGGATGCTTGGGACGCAGATCACCGA
CATAGAGCAGCTCAAGGTGTGAAATGGGCTGAAGACGTTGCTGTTGCTGA
TGGTGTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGGCGTCATTCGAGG
GCGTTTTGATTCGCCGATAAGGGGATGGTGGTCGGTACGGGATGCTTCGG
TTTGCCACGCGTGTATGCGGTGCAACCACCGCTACGGTGTGGTGCCTCCG
TGAGAAATTTTGTTGTCACGTTCTTGAAAGGGAAGGAGACAAGAGAGAGG
AAAGGTGAAGGAGCGCCTCGCCTCGCCGTGAAGCCGAGGGGAGTTCGTGA
TGAGCTTGAAGGAAGAGAAACATCGATAGTTTCTCCGGTGCTGCTTCCGA
GGGCATACTCTCGTTTCTTCCAACTCGCTGATACCGCCTGCTCGTGCTCG
GTGTACTGCTACGACCGAGAGCATAACGGCGAGGGGTTGCGGTCGTCCTT
GTGGGTGTGGTGTGTCTTCGGGCTGTTTTGCTGACGGCGTATGATAGCAC
TGGCCAAGTTCGAGCTTATTCCTTTACCGCTGGGTTGCGCCATGTAAGTG
TACTTGCTCAGGAAAGACAGCGTGCTCGCGGGTTGTTCCCCCTCTCGCAG
GACCTGAGAAAGAACGACCCCGAGCGACTCAGAGGCATCGGGGATGGTGC
GATGAAGGAGCTCACGGCCTTTTTTGCCGAGGGCAAGGGCAAGGCGCGCC
CCCCCGTCTCTGAGACGGACCCCCCCGCGCTCGAGGCCTGCCTCAAGCTC
TTCCAGGAGGTTGGCTGGGTGGGCGCCGTCAAGGCGCAGCAGCTGTACGA
CAAGGGAATGCGCTCGATCGAGGACCTCAGGACCAGGGGGAGGCACCTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10759:5182..6080+

>mRNA_Ecto-sp8_S_contig10759.1141.1 ID=mRNA_Ecto-sp8_S_contig10759.1141.1|Name=mRNA_Ecto-sp8_S_contig10759.1141.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10759:5182..6080+ (Ectocarpus species8 EcLAC_412)
ATGCTTGGGACGCAGATCACCGACATAGAGCAGCTCAAGGACCTGAGAAA
GAACGACCCCGAGCGACTCAGAGGCATCGGGGATGGTGCGATGAAGGAGC
TCACGGCCTTTTTTGCCGAGGGCAAGGGCAAGGCGCGCCCCCCCGTCTCT
GAGACGGACCCCCCCGCGCTCGAGGCCTGCCTCAAGCTCTTCCAGGAGGT
TGGCTGGGTGGGCGCCGTCAAGGCGCAGCAGCTGTACGACAAGGGAATGC
GCTCGATCGAGGACCTCAGGACCAGGGGGAGGCACCTC
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