mRNA_Ecto-sp8_S_contig10742.1119.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A6H5L1L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1L9_9PHAE) HSP 1 Score: 647 bits (1669), Expect = 3.170e-225 Identity = 395/521 (75.82%), Postives = 403/521 (77.35%), Query Frame = 1
Query: 4 SRAPPGFGEWDGGDGLSYDDNDVGTRVDVWWPRYNSYFRATIERYDPNVGTHTLFYEDGEIRDSDMSKRGFRVCYRPPGWTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAWGRRRPSPLAPRPPADYAPDASMYVLAAVNRFGEAGGMATLAQRLTGGRPSFGEVLETFRVGKALRAYASSRAVKETNWTLKECAAAALLSVPPESMRAATKVEIAECVSSVRDVALTLSGGGSATANSPLVLLQELEQLELAM--------------AMKVFRCPSLERRLAGLMHICGLVTLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFTVKALEAHRTTKSSPASKPGGDSPAGPHASAAASSQTGATPAGDGKGGLLRRGQVLHCREREWEGYGYGLLWLFVQDA 1518
SRAPPGFGEWD GDGLSYDDNDVGTRVDVWWPRYNSYFRATIERYDPNVGTHTLFYEDGEIRDSDMSKRGFRVCYRPPGWTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAWGRRRPSPLAPRPPADYAPDASMYVLAAVNRFGEAGGMATLAQRL+GGRPSFGEVLETFR+GKALRA+ASSRAVKETNWTLKECAAAALLSVPPESMRAATK+EIAE VSSVRD+ALTLSGGGSATA++PLVLLQELE A +VFRCPSLERRLAGLMHICGLVTLAERG GAVTTNGSLPPAGESRT AWAT R MEDWLVEVGFLEELFGSSMHVEL AVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLV G R VLHCREREWEGYGYGLLWLFVQDA
Sbjct: 199 SRAPPGFGEWDDGDGLSYDDNDVGTRVDVWWPRYNSYFRATIERYDPNVGTHTLFYEDGEIRDSDMSKRGFRVCYRPPGWTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWGRRRPSPLAPRPPADYAPDASMYVLAAVNRFGEAGGMATLAQRLSGGRPSFGEVLETFRIGKALRAHASSRAVKETNWTLKECAAAALLSVPPESMRAATKIEIAESVSSVRDLALTLSGGGSATAHAPLVLLQELEXXXXXXXXXXXXXXXGGEVGANEVFRCPSLERRLAGLMHICGLVTLAERGPGAVTTNGSLPPAGESRTAAWATPRVMEDWLVEVGFLEELFGSSMHVEL----------------------------------AVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLV-----------------------------------------------GGSVYTARKAVLHCREREWEGYGYGLLWLFVQDA 638
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI) HSP 1 Score: 667 bits (1721), Expect = 8.520e-214 Identity = 347/353 (98.30%), Postives = 349/353 (98.87%), Query Frame = 1
Query: 460 RFGEAGGMATLAQRLTGGRPSFGEVLETFRVGKALRAYASSRAVKETNWTLKECAAAALLSVPPESMRAATKVEIAECVSSVRDVALTLSGGGSATANSPLVLLQELEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFTVKALEAHRTTKSSPASKPGGDSPAGPHASAAASSQTGATPAGDGKGGLLRRGQVLHCREREWEGYGYGLLWLFVQDA 1518
+FGEAGGMATLAQRLTGGRPSFGEVLETFRVGKALR YASSRAVKETNWTLKECAAAALLSVPPESMRAATKVEIAECVSSVRD+ALTLSGGGSATANSPLVLLQELEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAERG GAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFG SMHVEL KRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFTVKALEAHRTTKSSPASKPGGDSPAGPHASAAASSQTGATPAGDGKGGLLRRGQVLHCREREWEGYGYGLLWLFVQDA
Sbjct: 291 KFGEAGGMATLAQRLTGGRPSFGEVLETFRVGKALRTYASSRAVKETNWTLKECAAAALLSVPPESMRAATKVEIAECVSSVRDLALTLSGGGSATANSPLVLLQELEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAERGPGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGCSMHVELAKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFTVKALEAHRTTKSSPASKPGGDSPAGPHASAAASSQTGATPAGDGKGGLLRRGQVLHCREREWEGYGYGLLWLFVQDA 643
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A4D9CWC4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWC4_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.540e-28 Identity = 129/443 (29.12%), Postives = 194/443 (43.79%), Query Frame = 1
Query: 67 DVGTRVDVWWPRYNSYFRATIERYDPNVGTHTLFYEDGEIRDSDMSKRGFRVCYRP----------PGWTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAWGRRRPSPL---APRPPADYAPDASMYVLAAVNRFGEAGGMATLAQRLTGGR--------PSFGEVLETFRVGKALRAYASSRAVKETNWTLKECAAAALLSVPPESMRAATKVEIAECVSSVRDVALTLSGGGSATANSPLVLLQELEQLELAMAMKVFRCPSLERRLAGLMHI-------CGLVTLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFTVKALEAHR 1311
DVGTRV VWW + Y+ TI YD G H + Y+DG++R M + F + P P XXXXXXXX P L A RPPA + S ++A +N F GG+ L + G PS + + LR ++ + T + +KE +L++ E R TK ++ + D+ LTL G A+ ++ + ++A + R P LE+RL GL +I L +L ++ + SLPP+ + L + ++G++ H+E+ RS +L FLA +A+ + LDLLW++++GKHEAVVR ++L+L+P LSP R HLFS +A F YT +TL L+YL T A A R
Sbjct: 308 DVGTRVKVWWGKDQVYYTGTISSYDECTGQHVVAYDDGDVRKYLMRHKEFEILNGPEKTSVASLPVPSRRSSSGEEDSPSPLAETASPGERRGPSLPTSPPXXXXXXXXXXXXXXWPHSLWLAARRPPASHQ-GVSCLLVAHINLFVNLGGLRVLGRHFYGRGSPLRSSRPPSLAGIRFYLALLHRLRGRLETQPLSVTVFQMKETVPGRVLALEEEDRRGLTKQDLKTLPQQLHDL-LTLLGVSRAS------VISATDSFRFSLACLLLRTPQLEKRLYGLAYIREALSKTAALPSLPS----SLASPPSLPPS------------LLLHLLRKTEVFPTVYGATTHLEILSRSPFLLHFLAAHHALHSHHLDLLWNTSLGKHEAVVRAFHALLLDLLPSLSPALRRHLFSRIASLSFRDYTAETLELLYLTTKAAWCATR 726
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A7S2SST1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SST1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.300e-12 Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query: 778 LEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHE 1140
++ LEL + K+F LERRL GL + L E+ V +G R + A A WL E F++E+ G MH+E+ KRS+ ++ FLA+ V T LDLLW++T HE
Sbjct: 6 IDPLELEFSFKMFCASQLERRLQGLAY------LREKAEQIVRADGRHGHMTSPRKIGAAYVAA---WLAEKHFIDEVLGPHMHIEIIKRSDKLIRFLAEMGQVETRHLDLLWTTTTTSHE 117
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A7S3I8R3_9CILI (Hypothetical protein (Fragment) n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3I8R3_9CILI) HSP 1 Score: 75.9 bits (185), Expect = 4.760e-11 Identity = 47/174 (27.01%), Postives = 78/174 (44.83%), Query Frame = 1
Query: 778 LEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAER--------GSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLV 1275
LE EL ++MK P LE+R+ G+ I +T A+ G T S+ +T W + A+ +W+ E +FG H ++ RS ++ FL + + +D++W+S GKHEA + ++ +V SP + FS + F + Q L LV
Sbjct: 59 LESFELELSMKCLNSPYLEKRIYGISEIIEKITYAKNKDEEDQKVARGIYTYQYSI-----FKTAKWLNSAALLEWIDRQNLFEIIFGPRSHPQIVMRSAELIKFLYTNSRFTRDNIDVIWNSAAGKHEAEREALINLIQEVVSCFSPQDLQYFFSKLTSLSFPEIDSQILSLV 227
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A7S2STX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STX3_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 6.150e-10 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 67 DVGTRVDVWWPRYNSYFRATIERYDPNVGTHTLFYEDGEIRDSDMSKRGF 216
DVG R+ VWWP+Y +Y+R TI +DP +G HT+ Y+D ++R D+ + F
Sbjct: 79 DVGARIQVWWPKYETYYRGTITHFDPGLGKHTVTYDDNDVRVYDLKTKQF 128
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: E9GZ89_DAPPU (Ubiquitinyl hydrolase 1 n=10 Tax=Daphnia TaxID=6668 RepID=E9GZ89_DAPPU) HSP 1 Score: 72.8 bits (177), Expect = 1.100e-9 Identity = 51/173 (29.48%), Postives = 80/173 (46.24%), Query Frame = 1
Query: 769 LQELEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHV-ELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVAR---TPFSKYTEQTLHLV 1275
LQ LE L M +++ + S ++ L I ++ T N + A E+ W TA M WL E L+ + S+H + ++ E IL F+ K A++ LD +W+S GKHEA+V+ + ++ L SP + HLF C T K E+ L L+
Sbjct: 251 LQNLEMFRLKMILRLLQISSFNGKMNALNEINKVIASVASYPHRTTGNSVVTGANETDE-EWLTAERMAGWLKEHRVLQIVLADSLHQPQYVEKLEKILRFVIKEKALTLEDLDRVWASQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFECFQASWTTAGKKQREKLLELI 422
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A1R2CRI8_9CILI (USP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CRI8_9CILI) HSP 1 Score: 72.0 bits (175), Expect = 1.880e-9 Identity = 46/178 (25.84%), Postives = 90/178 (50.56%), Query Frame = 1
Query: 781 EQLELAMAMKVFRCPSLERRLAGLMHICGLV-TLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFTVKALEAHR 1311
+ +EL +A+K+ +CP +E++L GL I ++ ++E+ S A L P + W+VE LE + ++ H E+ KR +L FLA+ + T LDL+ H++++ + V+ ++ P +S + +L+ + TP Y E+ L ++Y F+ +++ R
Sbjct: 326 DSVELGLALKLLKCPYMEKKLKGLSEIKEIIENISEKESSAKRKYKLLNP------------EVLAKWIVENKVLETVVENA-HEEMIKRLSCVLIFLAENKKLKTFHLDLILKYAQNHHDSLLISVYKVITDIAPHISFKLQNYLYKKLTDTPAEDYDEKFLRMIYEFSTRSITRER 490
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: A0A813MIP5_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813MIP5_9BILA) HSP 1 Score: 65.5 bits (158), Expect = 2.170e-7 Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 970 MEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFLSPHKRLHLFSCVARTPFSKYTEQTLHLVYLFT 1287
+ DW +E +E L+G ++HVE+ KRS+ I+ FLA N ++ LD +W+S KH A + + +++L+ L+ + +L +A+ K EQTL L L T
Sbjct: 400 LADWFIENNIVEYLYGPNLHVEVIKRSQEIVNFLAFTNRLTEKHLDAIWASAQLKHCA--KPVMETLISLIKHLNINSIKYLSQLIAKLDLVKQNEQTLLLSALLT 503
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 8.680e-7 Identity = 40/140 (28.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query: 772 QELEQLELAMAMKVFRCPSLERRLAGLMHICGLVTLAERGSGAVTTNGSLPPAGESRTVAWATARAMEDWLVEVGFLEELFGSSMHVELTKRSEPILAFLAKRNAVSTSQLDLLWSSTVGKHEAVVRVMSPVVLNLVPFL 1191
+ +E L+L +A+K++ CP +ER+L GL + V AE + + GS P T + + +WL + F++ LF H +L +RS ++ FL + A++ +D++W++ G + R+ VL PFL
Sbjct: 665 RRVEWLQLDLALKLYSCPFMERKLQGLKVLADAVAAAETPISSSISQGSSPA---------LTPQELVEWLDDNNFVKALFAG--HTQLIRRSGDVVGFLCRERALTGGHVDIIWAAGGGGQDKDRRICVHEVLR--PFL 791 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10742.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10742.1119.1 >prot_Ecto-sp8_S_contig10742.1119.1 ID=prot_Ecto-sp8_S_contig10742.1119.1|Name=mRNA_Ecto-sp8_S_contig10742.1119.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=506bp QSRAPPGFGEWDGGDGLSYDDNDVGTRVDVWWPRYNSYFRATIERYDPNVback to top mRNA from alignment at Ecto-sp8_S_contig10742:1274..5006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10742.1119.1 ID=mRNA_Ecto-sp8_S_contig10742.1119.1|Name=mRNA_Ecto-sp8_S_contig10742.1119.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3733bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10742:1274..5006+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10742:1274..5006+ >mRNA_Ecto-sp8_S_contig10742.1119.1 ID=mRNA_Ecto-sp8_S_contig10742.1119.1|Name=mRNA_Ecto-sp8_S_contig10742.1119.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1518bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10742:1274..5006+ (Ectocarpus species8 EcLAC_412)back to top |