mRNA_Ecto-sp8_S_contig10738.1114.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10738.1114.1
Unique NamemRNA_Ecto-sp8_S_contig10738.1114.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10738.1114.1 vs. uniprot
Match: A0A6H5L4H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H4_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 6.950e-139
Identity = 227/268 (84.70%), Postives = 232/268 (86.57%), Query Frame = 3 
Query:    3 IRTFKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWDSIAGGLQRWSMPFSLAQVLRRCLADSPKDRYSSMEEVCRLLCGIAAGDGGRVDEASAVSAASDYSCDEDVASDSVRTGMILNDIGVCLCSKGETEESERYYKMALLSSEDVFEAYYNLGLLYSTAAFNKFREAQQMFDAATERMSPRDPRRKSSIEHSKAAARKSNYHQSQEVMKALSGKYNCVSPNSSRDRGGGLAAPTGXXXXXXXXXXXSGAMSEGADGDNRRASF 806
            IR FKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLW SIAGGLQRWSMPFSLAQVLRRCLADSPKDR+SSMEEVCRLL GIAAGDGGR DE SAVSAASDYSCD DVASD +RTGMILNDIGVCLCSKGETEESERYYK+ALLSSE VFEA            FNKFREAQQMFDAATERMS  DPRRK SIEHSKAA RKSNYHQSQE+MKALSG YNCVS NSSRDRG        XXXXXXXXXXXSG MSE ADGDNR+ASF
Sbjct:   73 IRAFKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWHSIAGGLQRWSMPFSLAQVLRRCLADSPKDRFSSMEEVCRLLRGIAAGDGGRDDEDSAVSAASDYSCDPDVASDRLRTGMILNDIGVCLCSKGETEESERYYKLALLSSEGVFEAXXXXXXXXXXXXFNKFREAQQMFDAATERMSHGDPRRKFSIEHSKAAERKSNYHQSQEIMKALSGSYNCVSSNSSRDRGXXXXXXXXXXXXXXXXXXXSGVMSESADGDNRQASF 340
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BLAST of mRNA_Ecto-sp8_S_contig10738.1114.1 vs. uniprot
Match: D8LN11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN11_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 2.800e-96
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 3 
Query:    3 IRTFKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWDSIAGGLQRWSMPFSLAQVLRRCLADSPKDRYSSMEEVCRLLCGIAAGDGGRVDEASAVSAASDYSCDEDVASDSVRTGMILNDIGVCLCSKGETEESERYYKMALLSSEDVFEAYYNLGLLYSTAAFNK 506
            IR FKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWDSIAGGLQRWSMPFSLAQVLRRCLADSPKDRYSSMEEVCRLL GIAAGDGGR DEASAVSAASDYSCDE+VASD VRTGMILNDIGVCL SKGETEESERYYKMALLSSEDVFEAYYNLGLLYSTAAFNK
Sbjct: 1675 IRAFKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWDSIAGGLQRWSMPFSLAQVLRRCLADSPKDRYSSMEEVCRLLRGIAAGDGGRDDEASAVSAASDYSCDENVASDRVRTGMILNDIGVCLSSKGETEESERYYKMALLSSEDVFEAYYNLGLLYSTAAFNK 1842
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10738.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4H4_9PHAE6.950e-13984.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN11_ECTSI2.800e-9696.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10738contigEcto-sp8_S_contig10738:681..3055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score303.5
Seed ortholog evalue9.3e-80
Seed eggNOG ortholog2880.D8LN11
Model size810
KEGG koko:K04409,ko:K13412,ko:K19833
KEGG Pathwayko04010,ko04011,ko04012,ko04014,ko04024,ko04062,ko04360,ko04392,ko04510,ko04626,ko04650,ko04660,ko04666,ko04810,ko05120,ko05145,ko05205,ko05211,map04010,map04011,map04012,map04014,map04024,map04062,map04360,map04392,map04510,map04626,map04650,map04660,map04666,map04810,map05120,map05145,map05205,map05211
Hectar predicted targeting categoryother localisation
GOsGO:0000188,GO:0001932,GO:0001933,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030587,GO:0031152,GO:0031323,GO:0031324,GO:0031347,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032268,GO:0032269,GO:0032502,GO:0033549,GO:0033554,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0042594,GO:0043086,GO:0043170,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044764,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070372,GO:0070373,GO:0071496,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:0140096,GO:1900424,GO:1901564,GO:1902531,GO:1902532
Exons5
EggNOG free text desc.Rac GTPase binding
EggNOG OGsKOG0578@1,KOG0578@2759
EC2.7.11.1
Cds size777
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10738.1114.1prot_Ecto-sp8_S_contig10738.1114.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10738 713..3055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143168.597895-UTR-Ecto-sp8_S_contig10738:680..7121681143168.597895-UTR-Ecto-sp8_S_contig10738:680..712Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10738 681..712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143168.6065066-CDS-Ecto-sp8_S_contig10738:712..8611681143168.6065066-CDS-Ecto-sp8_S_contig10738:712..861Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10738 713..861 +
1681143168.6137757-CDS-Ecto-sp8_S_contig10738:1140..13331681143168.6137757-CDS-Ecto-sp8_S_contig10738:1140..1333Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10738 1141..1333 +
1681143168.620857-CDS-Ecto-sp8_S_contig10738:1688..18191681143168.620857-CDS-Ecto-sp8_S_contig10738:1688..1819Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10738 1689..1819 +
1681143168.6278732-CDS-Ecto-sp8_S_contig10738:2194..23241681143168.6278732-CDS-Ecto-sp8_S_contig10738:2194..2324Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10738 2195..2324 +
1681143168.6349387-CDS-Ecto-sp8_S_contig10738:2881..30551681143168.6349387-CDS-Ecto-sp8_S_contig10738:2881..3055Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10738 2882..3055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10738.1114.1

>prot_Ecto-sp8_S_contig10738.1114.1 ID=prot_Ecto-sp8_S_contig10738.1114.1|Name=mRNA_Ecto-sp8_S_contig10738.1114.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=259bp
MLVPTCRRDIVEKLGLFITDGELSCKLWDSIAGGLQRWSMPFSLAQVLRR
CLADSPKDRYSSMEEVCRLLCGIAAGDGGRVDEASAVSAASDYSCDEDVA
SDSVRTGMILNDIGVCLCSKGETEESERYYKMALLSSEDVFEAYYNLGLL
YSTAAFNKFREAQQMFDAATERMSPRDPRRKSSIEHSKAAARKSNYHQSQ
EVMKALSGKYNCVSPNSSRDRGGGLAAPTGGAARSSHHGGGSGAMSEGAD
GDNRRASFP
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mRNA from alignment at Ecto-sp8_S_contig10738:681..3055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10738.1114.1 ID=mRNA_Ecto-sp8_S_contig10738.1114.1|Name=mRNA_Ecto-sp8_S_contig10738.1114.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2375bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10738:681..3055+ (Ectocarpus species8 EcLAC_412)
AGATTCGCACTTTCAAGATAGATGGGCCGCACATGCTGGTGCCCACGTGC
CGTCGAGATATTGTCGAGAAACTAGGGCTTTTCATCACCGATGGAGAGCT
GTCCTGCAAGCTCTGGGACAGCATTGCCGGGGGGCTTCAGCGGTGGAGCA
TGCCGTTCTCTCTGGCGCAGGTTTTACGGAGGTGAGTGTGAGACGAGTGA
AGTACCAACGGTCCGGGATACGAGCTGAAAAGAGGGAAAACGGAAACCCC
GCAACCTTCTGATTCAAGTTTCGGCAGTGCATCACAGGAAGGAACAACTG
ATCCTTAGCACCCGTCCGAGGACCTCGGGAATCTCAGTTTTCCGCCACAA
AACGTATACTTGCGACGCATGAAGGGGGGGGGGGTAATGTGGATGGCGCG
TATATTGGAAGCGTAGGATCCACACCTTCAACACTTGTAGGCGCGGCGCG
CCGATGACAGGTGCCTGGCTGACAGCCCGAAGGACCGGTATTCAAGCATG
GAAGAAGTTTGTAGGCTTCTCTGCGGGATCGCGGCAGGCGATGGTGGACG
CGTCGACGAGGCTTCCGCGGTATCAGCGGCGAGCGACTACAGCTGCGACG
AGGATGTTGCGTCCGACAGCGTGCGCACGGGCATGATTCTCAACGACATC
GGGGTGAGTTTGGGCTACGAGACCTGCAAGGTTAGAGGGTGGCGAGGGCG
GGCGTTTAAACGGCATTGAAGCACCTTCGGCAAGTGAAGGACGCGGGAGA
GGATGGAAAGGGGGGATGGAGAGGGGGGTTGTGTCACAACCACACGCTAG
ACTACGGACCTCGTTGAGTTATGAGATGGCCGGCGTCTCACCGGATCCAA
GGCGCTTGGGCGTACCTAACAATGTGAACGATACAGGATAAGCGGATCGA
CGCACAATGCGCTTCATCCTGCACACAGGTCAACATACCCCCTCCCGACC
CCCCGGTTCGCCACACGATAACCTCTGGAAACAAACTCCTTCCCTGTTGT
TTTATTAGGTGTGCCTGTGCAGCAAAGGCGAGACCGAGGAATCGGAGCGG
TACTACAAGATGGCCCTGCTTTCTAGCGAAGATGTCTTCGAGGCGTACTA
CAACCTCGGCCTGCTATATAGCACAGCGGCGTTTAACAAGTGAGAGCTGG
TGTGTACGCCCCTTACGTCCTCCGCATACATAGGAAGGCCTACTAGTCGT
CGATCATCACAGCAAGAGCAGAGACTGCAGAACATTTCGCCACTCCACAT
GGCATCGTTCGTCGCTCTTCAGAGCGTTTCGAAGTCTGAAAACGCTTCCG
GTGACACGTACACGGCGTCTGCGATAGTTATTCTTTTTGTGTGCTAGGAT
TCGCGCATATTCCGACGTGCTGAGCGAGGTAGCTTGCTTGGTGCGGGGAC
GGCGCCAACACAAACAACAACAGCCTAAACGAAACAGCCACACTTTGCAA
CCCACAAGAAGTGCACACCACTTGGGTGTAAGCCCGTGACGCTACGAGAT
TCGTGCCCAACCAGGTTCCGAGAGGCCCAGCAAATGTTTGACGCGGCCAC
GGAAAGAATGAGTCCCCGCGACCCGCGCCGCAAGTCCAGCATCGAGCATT
CCAAGGCAGCCGCACGCAAGTCCAACTACCACCAATCCCAGGAGGTGGGG
CGACATATTTTTGTGTGTTCATGCGCCCTGACGATGTCACCCGAACGGTA
TGCGCGCATGCTGATTGGCTCTGTCGTGTGGCGCCACTCGGTACCGTGAT
AAGAAATGCGTGACGGGATATAAAACTGAGAGTGTCTTCGAGTCTCCGCA
CACTCTTGCGATCCGTCATTGTGCAATCATACACACTATCTGACGTTGCT
ATAGATCTCTCTCTGTCGACGGACGTCTATGGACACTCGTTTACAGGTCC
CTGGACGTGCCCATGGACACTCAATCAGGCGACTCTGCGAGAGTATTCAC
GCGGCCAGTTTTCAAGCACGTGTTTTAGTTGTCCGATGTACGCCAACGTA
ACCCAATTCTTTGAATAACGACCTGATCAACCGCTGTCGGCGGTAAAAGT
TGCAACGATCGTAGTTCGTTTTTCAAGTTCGGAAACCACCGCCAGACCAA
CCAAAATGCCGGCCTTGCATGAGTGGGTATCGAATTCGCACCCTGTCAAG
TCACGAACTAAACACCCTTTTGTCTGTCCCTCACTTTTTTCACCCAACCA
GGTAATGAAAGCTCTCTCCGGGAAGTACAATTGCGTTTCGCCAAACAGTT
CCAGGGATAGAGGAGGTGGGTTGGCCGCACCAACAGGTGGGGCGGCGAGG
AGCAGTCACCATGGCGGTGGAAGCGGAGCAATGAGCGAGGGCGCCGACGG
CGACAACCGTCGAGCATCGTTCCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10738:681..3055+

>mRNA_Ecto-sp8_S_contig10738.1114.1 ID=mRNA_Ecto-sp8_S_contig10738.1114.1|Name=mRNA_Ecto-sp8_S_contig10738.1114.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10738:681..3055+ (Ectocarpus species8 EcLAC_412)
ATGCTGGTGCCCACGTGCCGTCGAGATATTGTCGAGAAACTAGGGCTTTT
CATCACCGATGGAGAGCTGTCCTGCAAGCTCTGGGACAGCATTGCCGGGG
GGCTTCAGCGGTGGAGCATGCCGTTCTCTCTGGCGCAGGTTTTACGGAGG
TGCCTGGCTGACAGCCCGAAGGACCGGTATTCAAGCATGGAAGAAGTTTG
TAGGCTTCTCTGCGGGATCGCGGCAGGCGATGGTGGACGCGTCGACGAGG
CTTCCGCGGTATCAGCGGCGAGCGACTACAGCTGCGACGAGGATGTTGCG
TCCGACAGCGTGCGCACGGGCATGATTCTCAACGACATCGGGGTGTGCCT
GTGCAGCAAAGGCGAGACCGAGGAATCGGAGCGGTACTACAAGATGGCCC
TGCTTTCTAGCGAAGATGTCTTCGAGGCGTACTACAACCTCGGCCTGCTA
TATAGCACAGCGGCGTTTAACAAGTTCCGAGAGGCCCAGCAAATGTTTGA
CGCGGCCACGGAAAGAATGAGTCCCCGCGACCCGCGCCGCAAGTCCAGCA
TCGAGCATTCCAAGGCAGCCGCACGCAAGTCCAACTACCACCAATCCCAG
GAGGTAATGAAAGCTCTCTCCGGGAAGTACAATTGCGTTTCGCCAAACAG
TTCCAGGGATAGAGGAGGTGGGTTGGCCGCACCAACAGGTGGGGCGGCGA
GGAGCAGTCACCATGGCGGTGGAAGCGGAGCAATGAGCGAGGGCGCCGAC
GGCGACAACCGTCGAGCATCGTTCCCC
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