mRNA_Ecto-sp8_S_contig10736.1111.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10736.1111.1
Unique NamemRNA_Ecto-sp8_S_contig10736.1111.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10736.1111.1 vs. uniprot
Match: Q8QKW4_ESV1K (EsV-1-32 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKW4_ESV1K)

HSP 1 Score: 149 bits (376), Expect = 2.530e-45
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    1 SQTLIIMVLLAP*LVFTSIPGLLTIDFFFWRKRRKAMHDVSVLDTTQALVSRHLGSRQALGSSPVLPQAGFDRIFENQFRTHKKF 255
            SQT++ MVLLAP LVFTS PGLLTIDFFFWRKRRKA+HDV V DTTQAL SRHLGSRQALGS+PVLPQAGFDRIFENQFRTH+KF
Sbjct:    4 SQTMVNMVLLAPLLVFTSTPGLLTIDFFFWRKRRKAVHDVGVPDTTQALGSRHLGSRQALGSTPVLPQAGFDRIFENQFRTHQKF 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10736.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKW4_ESV1K2.530e-4587.06EsV-1-32 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10736contigEcto-sp8_S_contig10736:2497..2754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size258
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143168.4992702-UTR-Ecto-sp8_S_contig10736:2496..26041681143168.4992702-UTR-Ecto-sp8_S_contig10736:2496..2604Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10736 2497..2604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143168.507993-CDS-Ecto-sp8_S_contig10736:2604..27541681143168.507993-CDS-Ecto-sp8_S_contig10736:2604..2754Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10736 2605..2754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10736.1111.1prot_Ecto-sp8_S_contig10736.1111.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10736 2605..2754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10736.1111.1

>prot_Ecto-sp8_S_contig10736.1111.1 ID=prot_Ecto-sp8_S_contig10736.1111.1|Name=mRNA_Ecto-sp8_S_contig10736.1111.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=50bp
MHDVSVLDTTQALVSRHLGSRQALGSSPVLPQAGFDRIFENQFRTHKKF*
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mRNA from alignment at Ecto-sp8_S_contig10736:2497..2754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10736.1111.1 ID=mRNA_Ecto-sp8_S_contig10736.1111.1|Name=mRNA_Ecto-sp8_S_contig10736.1111.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10736:2497..2754+ (Ectocarpus species8 EcLAC_412)
AGTCAAACGTTAATAATCATGGTACTTCTGGCTCCTTAGCTGGTTTTTAC
ATCCATCCCAGGTCTTTTGACCATCGACTTCTTTTTTTGGAGAAAGAGAC
GCAAAGCGATGCATGATGTGAGCGTGCTGGACACCACTCAAGCCCTGGTC
TCGAGGCATCTGGGGTCGAGGCAAGCTCTTGGCTCGAGCCCTGTTCTGCC
ACAAGCAGGCTTTGATCGAATTTTCGAAAACCAATTCAGAACTCACAAAA
AGTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10736:2497..2754+

>mRNA_Ecto-sp8_S_contig10736.1111.1 ID=mRNA_Ecto-sp8_S_contig10736.1111.1|Name=mRNA_Ecto-sp8_S_contig10736.1111.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10736:2497..2754+ (Ectocarpus species8 EcLAC_412)
ATGCATGATGTGAGCGTGCTGGACACCACTCAAGCCCTGGTCTCGAGGCA
TCTGGGGTCGAGGCAAGCTCTTGGCTCGAGCCCTGTTCTGCCACAAGCAG
GCTTTGATCGAATTTTCGAAAACCAATTCAGAACTCACAAAAAGTTTTAA
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