mRNA_Ecto-sp8_S_contig106734.1044.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106734.1044.1
Unique NamemRNA_Ecto-sp8_S_contig106734.1044.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: UPI000C75D5C1 (histone H2A-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75D5C1)

HSP 1 Score: 217 bits (552), Expect = 1.210e-70
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAA 399
            MS RGKGGK K KAKSRSSRAGLQFPVGRIHRLLRKGNY+ERVGAGAPVYMAAVMEYLAAE+LELAGNAARDNKK+RIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQ+VLLPKKSQ A
Sbjct:    1 MSGRGKGGKVKGKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQSVLLPKKSQGA 123
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: A0A210PR34_MIZYE (Histone H2A n=3 Tax=Mollusca TaxID=6447 RepID=A0A210PR34_MIZYE)

HSP 1 Score: 216 bits (551), Expect = 1.670e-70
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAAK 402
            MS RGKGGK KSKAKSRSSRAGLQFPVGRIHRLLRKGNY+ERVGAGAPVY+AAV+EYLAAE+LELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQAVLLPKK+ A K
Sbjct:    1 MSGRGKGGKTKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTGATK 124
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: A0A6G1S640_9ACAR (Histone H2A n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S640_9ACAR)

HSP 1 Score: 215 bits (548), Expect = 3.670e-70
Identity = 112/125 (89.60%), Postives = 120/125 (96.00%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAAKE 405
            MS RGKGGK KSKAKSRSSRAGLQFPVGRIHRLLRKGNY+ERVG GAPVY+AAV+EYLAAE+LELAGNAARDNKK+RIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKK++  K+
Sbjct:    1 MSGRGKGGKVKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEKVKQ 125
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: T1K5S4_TETUR (Histone H2A n=4 Tax=Acari TaxID=6933 RepID=T1K5S4_TETUR)

HSP 1 Score: 215 bits (547), Expect = 5.050e-70
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKS 390
            MS RGKGGK KSKAKSRSSRAGLQFPVGRIHRLLRKGNY+ERVGAGAPVY+AAV+EYLAAE+LELAGNAARDNKK+RIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKS
Sbjct:    1 MSGRGKGGKVKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKS 120
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: H2A_CHITH (Histone H2A n=6 Tax=Bilateria TaxID=33213 RepID=H2A_CHITH)

HSP 1 Score: 215 bits (547), Expect = 5.220e-70
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAAK 402
            MS RGKGGK K+KAKSRSSRAGLQFPVGRIHRLLRKGNY ERVGAGAPVY+AAVMEYLAAE+LELAGNAARDNKK+RIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQAVLLPKK+++ K
Sbjct:    1 MSGRGKGGKVKAKAKSRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTESKK 124
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: A0A8J1TY96_OWEFU (Histone H2A n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TY96_OWEFU)

HSP 1 Score: 214 bits (545), Expect = 1.370e-69
Identity = 113/122 (92.62%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQA 396
            MS RGKGGKAKSKAKSRS+RAGLQFPVGRIHRLLRKGNY++RVGAGAPVY+AAV+EYLAAEILELAGNAARDNKKSRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQAVLLPKKS A
Sbjct:    1 MSGRGKGGKAKSKAKSRSTRAGLQFPVGRIHRLLRKGNYAKRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSGA 122
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BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: A0A1S3K1A6_LINUN (Histone H2A n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K1A6_LINUN)

HSP 1 Score: 214 bits (544), Expect = 1.490e-69
Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAA 399
            MS RGKGGKA++K KSRSSRAGLQFPVGRIHRLLRKGNY++RVGAGAPVY+AAV+EYLAAE+LELAGNAARDNKKSRI+PRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQAVLLPKKS+AA
Sbjct:    1 MSGRGKGGKARAKGKSRSSRAGLQFPVGRIHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSKAA 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: A0A6P7SRU3_OCTVU (Histone H2A n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SRU3_OCTVU)

HSP 1 Score: 214 bits (544), Expect = 1.490e-69
Identity = 112/123 (91.06%), Postives = 119/123 (96.75%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAA 399
            MS RGKGGKAK+K+K+RSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVY+AAVMEYL AE+LELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQAVLLPKK+  A
Sbjct:    1 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYLAAVMEYLGAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKAHKA 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: UPI001EE53AA4 (histone H2A-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE53AA4)

HSP 1 Score: 214 bits (545), Expect = 1.510e-69
Identity = 112/123 (91.06%), Postives = 120/123 (97.56%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQAA 399
            MS RGKGGK K+KAKSRS+RAGLQFPVGRIHRLLRKGNY+ERVGAGAPVY+AAV+EYLAAE+LELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQAVLLPKK+ AA
Sbjct:    1 MSGRGKGGKTKAKAKSRSTRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKAAAA 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Match: A0A8B8CWW9_CRAVI (Histone H2A n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CWW9_CRAVI)

HSP 1 Score: 214 bits (545), Expect = 1.720e-69
Identity = 112/121 (92.56%), Postives = 118/121 (97.52%), Query Frame = 1 
Query:   31 MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVYMAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKSQ 393
            MS RGKGGK K KAKSRSSRAGLQFPVGRIHRLLRKGNY+ERVGAGAPVY+AAV+EYLAAE+LELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLL+GVTIAQGGVLPNIQAVLLPKK+Q
Sbjct:   15 MSGRGKGGKVKGKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106734.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C75D5C11.210e-7092.68histone H2A-like n=1 Tax=Eurytemora affinis TaxID=... [more]
A0A210PR34_MIZYE1.670e-7091.94Histone H2A n=3 Tax=Mollusca TaxID=6447 RepID=A0A2... [more]
A0A6G1S640_9ACAR3.670e-7089.60Histone H2A n=1 Tax=Aceria tosichella TaxID=561515... [more]
T1K5S4_TETUR5.050e-7094.17Histone H2A n=4 Tax=Acari TaxID=6933 RepID=T1K5S4_... [more]
H2A_CHITH5.220e-7090.32Histone H2A n=6 Tax=Bilateria TaxID=33213 RepID=H2... [more]
A0A8J1TY96_OWEFU1.370e-6992.62Histone H2A n=2 Tax=Owenia fusiformis TaxID=6347 R... [more]
A0A1S3K1A6_LINUN1.490e-6989.43Histone H2A n=2 Tax=Lingula unguis TaxID=7574 RepI... [more]
A0A6P7SRU3_OCTVU1.490e-6991.06Histone H2A n=2 Tax=Octopus TaxID=6643 RepID=A0A6P... [more]
UPI001EE53AA41.510e-6991.06histone H2A-like n=1 Tax=Haliotis rubra TaxID=3610... [more]
A0A8B8CWW9_CRAVI1.720e-6992.56Histone H2A n=2 Tax=Crassostrea virginica TaxID=65... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106734contigEcto-sp8_S_contig106734:76..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score218.0
Seed ortholog evalue2.5e-54
Seed eggNOG ortholog32264.tetur05g07230.1
Model size408
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
EggNOG free text desc.Histone H2A
EggNOG OGs3A1K0@33154,3BQBZ@33208,3D75E@33213,429UA@6656,COG5262@1,KOG1756@2759
Cds size378
COG Functional cat.B
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143163.5705075-CDS-Ecto-sp8_S_contig106734:75..4531681143163.5705075-CDS-Ecto-sp8_S_contig106734:75..453Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106734 76..453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143163.5862978-UTR-Ecto-sp8_S_contig106734:453..4831681143163.5862978-UTR-Ecto-sp8_S_contig106734:453..483Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106734 454..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106734.1044.1prot_Ecto-sp8_S_contig106734.1044.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106734 76..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106734.1044.1

>prot_Ecto-sp8_S_contig106734.1044.1 ID=prot_Ecto-sp8_S_contig106734.1044.1|Name=mRNA_Ecto-sp8_S_contig106734.1044.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=126bp
MSARGKGGKAKSKAKSRSSRAGLQFPVGRIHRLLRKGNYSERVGAGAPVY
MAAVMEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLAGV
TIAQGGVLPNIQAVLLPKKSQAAKE*
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mRNA from alignment at Ecto-sp8_S_contig106734:76..483-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106734.1044.1 ID=mRNA_Ecto-sp8_S_contig106734.1044.1|Name=mRNA_Ecto-sp8_S_contig106734.1044.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106734:76..483- (Ectocarpus species8 EcLAC_412)
TCACTTCTACAAGAGATAACTGATTCCACGATGTCTGCCCGTGGAAAGGG
AGGAAAAGCCAAGTCTAAGGCCAAGTCCAGGTCAAGCAGGGCCGGGCTTC
AGTTCCCAGTGGGGAGGATCCACAGGCTTCTCAGGAAAGGGAACTATTCA
GAGAGGGTTGGCGCAGGAGCTCCTGTCTATATGGCAGCAGTCATGGAGTA
TCTTGCTGCGGAGATATTGGAGCTGGCTGGCAATGCTGCTCGGGACAATA
AGAAGAGCAGGATTATTCCCAGGCATCTCCAGCTGGCTATCAGGAATGAT
GAGGAGTTGAACAAGTTGCTGGCCGGTGTGACCATCGCCCAGGGCGGGGT
GTTGCCCAACATCCAGGCCGTGCTGCTCCCCAAGAAGAGTCAGGCCGCCA
AGGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106734:76..483-

>mRNA_Ecto-sp8_S_contig106734.1044.1 ID=mRNA_Ecto-sp8_S_contig106734.1044.1|Name=mRNA_Ecto-sp8_S_contig106734.1044.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106734:76..483- (Ectocarpus species8 EcLAC_412)
ATGTCTGCCCGTGGAAAGGGAGGAAAAGCCAAGTCTAAGGCCAAGTCCAG
GTCAAGCAGGGCCGGGCTTCAGTTCCCAGTGGGGAGGATCCACAGGCTTC
TCAGGAAAGGGAACTATTCAGAGAGGGTTGGCGCAGGAGCTCCTGTCTAT
ATGGCAGCAGTCATGGAGTATCTTGCTGCGGAGATATTGGAGCTGGCTGG
CAATGCTGCTCGGGACAATAAGAAGAGCAGGATTATTCCCAGGCATCTCC
AGCTGGCTATCAGGAATGATGAGGAGTTGAACAAGTTGCTGGCCGGTGTG
ACCATCGCCCAGGGCGGGGTGTTGCCCAACATCCAGGCCGTGCTGCTCCC
CAAGAAGAGTCAGGCCGCCAAGGAGTAG
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