mRNA_Ecto-sp8_S_contig10656.1019.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: D7FHC9_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC9_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.960e-63 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query: 1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL
Sbjct: 44 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 147
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A8J2WZP9_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZP9_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.560e-28 Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1
Query: 4 EPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVML-----WSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLL 285
+PT +EMC MCPS+T+QQR+ GF C GY LSF+ T+ML W +++FA++Y G+ IAI AT FLIGPRRQC KMF K RR AC+ +L++L
Sbjct: 14 QPTFEDEMCSMCPSMTYQQRLIGFCICCGCGYALSFMGTLMLLSKDPWKKRVTNFAILYVFGNFIAIAATGFLIGPRRQCKKMFSKTRRFACIFWLLML 112
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A835YKD4_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD4_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.070e-24 Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 16 ANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGD---LSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILA 306
A++MC CP+LT+QQRV GFV + +GY+LSF+ T++L G + FA++Y LG+LIA+ T FLIGP+ C KMFHK RR A + YLV+L V I A
Sbjct: 25 ADDMCACCPTLTYQQRVIGFVTTMIVGYILSFVGTLLLIGGGPAGIRGFAVLYVLGNLIALSGTGFLIGPKSHCKKMFHKNRRFAAIFYLVMLLVVFIAA 124
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: W7TZX0_9STRA (Vesicle transport protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZX0_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.000e-23 Identity = 49/101 (48.51%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAV 294
QE ++ E+C MCPSLT+QQR+ GFV C LGYLLSF+ T+ L S + +FA +Y +G++IA+ +T FL+GP+ QC KMF K RR + ++Y+++L V
Sbjct: 27 QEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVV 127
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S2DTQ9_9EUKA (Vesicle transport protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DTQ9_9EUKA) HSP 1 Score: 87.0 bits (214), Expect = 5.830e-19 Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 37 CPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
CPSLTF++RV G +ACL +G+++SFL + W+G++++FA++Y LG++++I A+ FL GPRRQ M KRR A IYL + + LAFL
Sbjct: 65 CPSLTFRERVQGCIACLIVGFVISFLGFISFWTGNITAFAILYTLGNIVSICASGFLFGPRRQLRNMARAKRRWAVGIYLGSMVLTLALAFL 156
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S3U763_9SPIT (Vesicle transport protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U763_9SPIT) HSP 1 Score: 85.1 bits (209), Expect = 3.900e-18 Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1
Query: 34 MCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
MCP+LTF+QR+ G + CL G LLSF+ T++ W+G ++ FA++Y +G++++I T FLIGP+RQ M R+ A +IY ++F +I AFL
Sbjct: 72 MCPNLTFRQRLYGCLGCLVGGILLSFMGTLLWWTGHVAGFAVLYTIGNIVSICGTGFLIGPKRQVRNMCKGSRQYATLIYFTMMFLTLIAAFL 164
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A8J2WH84_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WH84_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.040e-17 Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSG----DLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
+E T+ ++CEMCP++TF+QR+ + C LGY+L T+ L G ++ F+++Y G+LIAI AT+F +GP+ C KM++ RR A +YLV L V++LA L
Sbjct: 56 EEQTIEEQVCEMCPTMTFKQRLIALICCCVLGYILEICGTLTLIGGPTARNIRKFSVLYVCGNLIAIMATAFWVGPKLMCKKMWNSTRRGATAMYLVSLVLVLVLALL 163
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A2D4BV73_PYTIN (Vesicle transport protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV73_PYTIN) HSP 1 Score: 80.5 bits (197), Expect = 1.270e-16 Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 4 EPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAF 309
EP+ E+ +CPSL++ +RV GF+ C LG+LLSF ST L G+ FA+ Y +G+L+++G++ F +GP +Q MF KKRR + +IYL + ++L F
Sbjct: 20 EPSFKEEVNSICPSLSYHERVIGFLTCFLLGFLLSFGSTFRLAKLVHGNPGPFAIAYTIGNLLSLGSSMFFVGPCKQVETMFRKKRRGSAIIYLSFIVVTLVLCF 124
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S4HST6_9STRA (Vesicle transport protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HST6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.540e-16 Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVM---LWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYL 276
Q+ +E+ ++CP L++QQR+ GF C GYL++F+S M L GD F LIY LG ++++ ++ FL+GP+RQC MF K R+ +++L
Sbjct: 30 QDSDALDELSDLCPKLSYQQRIIGFAVCFGTGYLITFMSFGMFVELAEGDPVPFVLIYTLGHILSLSSSGFLVGPKRQCKNMFDKTRKWTTIVFL 124
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.740e-16 Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 25 MCEMCPSLTFQQRVGGFVACLALGYLLS---FLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAF 309
+C +CP LT+QQR+GG++AC + + LS F V L G+ + F + Y LG+++AI + FL GPR QC KM+ RRIA +YL+ +F I +AF
Sbjct: 26 LCSICPQLTYQQRIGGYIACFFVSFCLSIGSFTRLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAF 123 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10656.1019.1 >prot_Ecto-sp8_S_contig10656.1019.1 ID=prot_Ecto-sp8_S_contig10656.1019.1|Name=mRNA_Ecto-sp8_S_contig10656.1019.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=107bp MCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGback to top mRNA from alignment at Ecto-sp8_S_contig10656:5363..6473- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10656.1019.1 ID=mRNA_Ecto-sp8_S_contig10656.1019.1|Name=mRNA_Ecto-sp8_S_contig10656.1019.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10656:5363..6473- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10656:5363..6473- >mRNA_Ecto-sp8_S_contig10656.1019.1 ID=mRNA_Ecto-sp8_S_contig10656.1019.1|Name=mRNA_Ecto-sp8_S_contig10656.1019.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10656:5363..6473- (Ectocarpus species8 EcLAC_412)back to top |