mRNA_Ecto-sp8_S_contig10656.1019.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10656.1019.1
Unique NamemRNA_Ecto-sp8_S_contig10656.1019.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: D7FHC9_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC9_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.960e-63
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
            QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL
Sbjct:   44 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 147          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A8J2WZP9_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZP9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.560e-28
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 EPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVML-----WSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLL 285
            +PT  +EMC MCPS+T+QQR+ GF  C   GY LSF+ T+ML     W   +++FA++Y  G+ IAI AT FLIGPRRQC KMF K RR AC+ +L++L
Sbjct:   14 QPTFEDEMCSMCPSMTYQQRLIGFCICCGCGYALSFMGTLMLLSKDPWKKRVTNFAILYVFGNFIAIAATGFLIGPRRQCKKMFSKTRRFACIFWLLML 112          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A835YKD4_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.070e-24
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   16 ANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGD---LSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILA 306
            A++MC  CP+LT+QQRV GFV  + +GY+LSF+ T++L  G    +  FA++Y LG+LIA+  T FLIGP+  C KMFHK RR A + YLV+L  V I A
Sbjct:   25 ADDMCACCPTLTYQQRVIGFVTTMIVGYILSFVGTLLLIGGGPAGIRGFAVLYVLGNLIALSGTGFLIGPKSHCKKMFHKNRRFAAIFYLVMLLVVFIAA 124          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: W7TZX0_9STRA (Vesicle transport protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZX0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.000e-23
Identity = 49/101 (48.51%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAV 294
            QE ++  E+C MCPSLT+QQR+ GFV C  LGYLLSF+ T+ L S     + +FA +Y +G++IA+ +T FL+GP+ QC KMF K RR + ++Y+++L  V
Sbjct:   27 QEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVV 127          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S2DTQ9_9EUKA (Vesicle transport protein n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DTQ9_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 5.830e-19
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   37 CPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
            CPSLTF++RV G +ACL +G+++SFL  +  W+G++++FA++Y LG++++I A+ FL GPRRQ   M   KRR A  IYL  +   + LAFL
Sbjct:   65 CPSLTFRERVQGCIACLIVGFVISFLGFISFWTGNITAFAILYTLGNIVSICASGFLFGPRRQLRNMARAKRRWAVGIYLGSMVLTLALAFL 156          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S3U763_9SPIT (Vesicle transport protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U763_9SPIT)

HSP 1 Score: 85.1 bits (209), Expect = 3.900e-18
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   34 MCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
            MCP+LTF+QR+ G + CL  G LLSF+ T++ W+G ++ FA++Y +G++++I  T FLIGP+RQ   M    R+ A +IY  ++F  +I AFL
Sbjct:   72 MCPNLTFRQRLYGCLGCLVGGILLSFMGTLLWWTGHVAGFAVLYTIGNIVSICGTGFLIGPKRQVRNMCKGSRQYATLIYFTMMFLTLIAAFL 164          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A8J2WH84_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WH84_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.040e-17
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSG----DLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFL 312
            +E T+  ++CEMCP++TF+QR+   + C  LGY+L    T+ L  G    ++  F+++Y  G+LIAI AT+F +GP+  C KM++  RR A  +YLV L  V++LA L
Sbjct:   56 EEQTIEEQVCEMCPTMTFKQRLIALICCCVLGYILEICGTLTLIGGPTARNIRKFSVLYVCGNLIAIMATAFWVGPKLMCKKMWNSTRRGATAMYLVSLVLVLVLALL 163          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A2D4BV73_PYTIN (Vesicle transport protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV73_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 1.270e-16
Identity = 43/105 (40.95%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    4 EPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAF 309
            EP+   E+  +CPSL++ +RV GF+ C  LG+LLSF ST  L     G+   FA+ Y +G+L+++G++ F +GP +Q   MF KKRR + +IYL  +   ++L F
Sbjct:   20 EPSFKEEVNSICPSLSYHERVIGFLTCFLLGFLLSFGSTFRLAKLVHGNPGPFAIAYTIGNLLSLGSSMFFVGPCKQVETMFRKKRRGSAIIYLSFIVVTLVLCF 124          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S4HST6_9STRA (Vesicle transport protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HST6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.540e-16
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 QEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVM---LWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYL 276
            Q+    +E+ ++CP L++QQR+ GF  C   GYL++F+S  M   L  GD   F LIY LG ++++ ++ FL+GP+RQC  MF K R+   +++L
Sbjct:   30 QDSDALDELSDLCPKLSYQQRIIGFAVCFGTGYLITFMSFGMFVELAEGDPVPFVLIYTLGHILSLSSSGFLVGPKRQCKNMFDKTRKWTTIVFL 124          
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.740e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   25 MCEMCPSLTFQQRVGGFVACLALGYLLS---FLSTVMLWSGDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAF 309
            +C +CP LT+QQR+GG++AC  + + LS   F   V L  G+ + F + Y LG+++AI  + FL GPR QC KM+   RRIA  +YL+ +F  I +AF
Sbjct:   26 LCSICPQLTYQQRIGGYIACFFVSFCLSIGSFTRLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAF 123          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10656.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHC9_ECTSI1.960e-63100.00Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A8J2WZP9_9STRA3.560e-2853.54Vesicle transport protein n=1 Tax=Pelagomonas calc... [more]
A0A835YKD4_9STRA1.070e-2452.00Vesicle transport protein n=1 Tax=Tribonema minus ... [more]
W7TZX0_9STRA2.000e-2348.51Vesicle transport protein n=2 Tax=Monodopsidaceae ... [more]
A0A7S2DTQ9_9EUKA5.830e-1947.83Vesicle transport protein n=2 Tax=Haptolina brevif... [more]
A0A7S3U763_9SPIT3.900e-1845.16Vesicle transport protein n=1 Tax=Strombidinopsis ... [more]
A0A8J2WH84_9STRA1.040e-1741.67Vesicle transport protein n=1 Tax=Pelagomonas calc... [more]
A0A2D4BV73_PYTIN1.270e-1640.95Vesicle transport protein n=2 Tax=Pythium insidios... [more]
A0A7S4HST6_9STRA1.540e-1640.00Vesicle transport protein n=2 Tax=Odontella aurita... [more]
A0A7S3JV88_9STRA2.740e-1643.88Vesicle transport protein n=1 Tax=Aureoumbra lagun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10656contigEcto-sp8_S_contig10656:5363..6473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score184.9
Seed ortholog evalue2e-44
Seed eggNOG ortholog2880.D7FHC9
Model size345
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5102@1,KOG2887@2759
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Ec32 orthologEc-03_003950.1
Cds size321
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.1137156-CDS-Ecto-sp8_S_contig10656:5362..55071681143162.1137156-CDS-Ecto-sp8_S_contig10656:5362..5507Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10656 5363..5507 -
1681143162.1237462-CDS-Ecto-sp8_S_contig10656:6273..64491681143162.1237462-CDS-Ecto-sp8_S_contig10656:6273..6449Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10656 6274..6449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.1328967-UTR-Ecto-sp8_S_contig10656:6449..64731681143162.1328967-UTR-Ecto-sp8_S_contig10656:6449..6473Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10656 6450..6473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10656.1019.1prot_Ecto-sp8_S_contig10656.1019.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10656 5363..6449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10656.1019.1

>prot_Ecto-sp8_S_contig10656.1019.1 ID=prot_Ecto-sp8_S_contig10656.1019.1|Name=mRNA_Ecto-sp8_S_contig10656.1019.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=107bp
MCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWSGDLSSFALIYCLG
SLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFLVSEK
IDLIIIR
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mRNA from alignment at Ecto-sp8_S_contig10656:5363..6473-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10656.1019.1 ID=mRNA_Ecto-sp8_S_contig10656.1019.1|Name=mRNA_Ecto-sp8_S_contig10656.1019.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10656:5363..6473- (Ectocarpus species8 EcLAC_412)
CAGGAACCGACGCTAGCGAACGAGATGTGCGAAATGTGCCCGTCCCTGAC CTTCCAGCAGCGGGTGGGGGGCTTCGTGGCCTGCCTCGCGCTGGGGTACC TGCTGTCCTTCCTCAGCACTGTCATGCTCTGGTCCGGAGACCTGTCCTCG TTCGCGCTCATCTACTGCCTCGGCTCTCTCATCGCCATCGGCGCTACCTC GTGAGTGAACTCTTAACTCTTTCTTCCGCGTTATCTGACGGAGGGCTATC GTTGGCGGTGCATTTCCTGCTGATATACGTACCGCAGGAGGGGAGGGTAG AGAGGGGTCCTTCTGTGTGACCACGGGTTAGAGTCTCCGGATATTTCTTG CCTCCGTCGGCACCAAACCACATCGTGTAGTGTGTCTCCAAGCAGAAATG GCTCCTCAATTCATTTCATTACCTTTCCGCCGTGCATGGGTGTTGGGTTC TGCGCGTGTTGCATTGAATTGCTGCAAGGTTTTGTATGTTGGATGGGCAA TGCTGTCGTGAGCAGCTCAGGAGATCTGTTATCCCCGGCATCAATGTGGT TCTCGGGCTCTCTCGCGCTCTCGTTATCCTGGCCTACACGAGCATCGTTT TTCTTGGCCTGTGCCCTCCGCGTGAGGTCCTTTGTGGTCCTCAAAGTTGA AAAACAACCTTTGTAGACCAATCAATGTGCATACACGGATTGCGTTCACA CCCGGAAGGATTGGTAAATAGGTAGATCGAATGAAATATATTCTGGAACG GGAAGTCTCCGACCGACCCGCAACGGGTGAATAGAACACACCCCGTTTTG AACACACTTCTTGCTGAGTCCTATCGCCTCGTAAGGAAAGCAACCCTAGG ACACGATCGCGGTTTGAGACTGTCCACGCTGTGCTAACGGCTGCTACTGC TGCTACTGCTGCTGCTGCTGCTGCTGCCGTCGAACACGTGGCGTAACGCC ACACCGTCCGTCCCAGGTTCCTGATCGGCCCTCGTCGGCAGTGCGGCAAG ATGTTCCACAAGAAGAGACGGATCGCGTGCGTCATCTACCTCGTCTTGCT CTTCGCGGTCATCATCTTGGCCTTCCTCGTAAGTGAAAAAATAGACTTAA TAATAATAAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10656:5363..6473-

>mRNA_Ecto-sp8_S_contig10656.1019.1 ID=mRNA_Ecto-sp8_S_contig10656.1019.1|Name=mRNA_Ecto-sp8_S_contig10656.1019.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10656:5363..6473- (Ectocarpus species8 EcLAC_412)
ATGTGCGAAATGTGCCCGTCCCTGACCTTCCAGCAGCGGGTGGGGGGCTT
CGTGGCCTGCCTCGCGCTGGGGTACCTGCTGTCCTTCCTCAGCACTGTCA
TGCTCTGGTCCGGAGACCTGTCCTCGTTCGCGCTCATCTACTGCCTCGGC
TCTCTCATCGCCATCGGCGCTACCTCGTTCCTGATCGGCCCTCGTCGGCA
GTGCGGCAAGATGTTCCACAAGAAGAGACGGATCGCGTGCGTCATCTACC
TCGTCTTGCTCTTCGCGGTCATCATCTTGGCCTTCCTCGTAAGTGAAAAA
ATAGACTTAATAATAATAAGA
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