mRNA_Ecto-sp8_S_contig106559.1018.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106559.1018.1
Unique NamemRNA_Ecto-sp8_S_contig106559.1018.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.180e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV
Sbjct:   21 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A835YS38_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS38_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.570e-24
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            Q+IEFY PLTMIVG+NGCGKTTIIECL+YA TG LPP +RNGQ+FVHDPK+
Sbjct:   21 QIIEFYMPLTMIVGSNGCGKTTIIECLRYATTGILPPNSRNGQTFVHDPKM 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: H3GA74_PHYRM (AAA_23 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA74_PHYRM)

HSP 1 Score: 95.5 bits (236), Expect = 3.950e-23
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            Q+IEFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS +HDPK+
Sbjct:   21 QIIEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLIHDPKI 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A024GBH2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GBH2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.250e-22
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            ++IEF+ PLT+I+G NGCGKTTIIECLK ACTG LPPGARNGQSF+HDPK+
Sbjct:   21 ELIEFFHPLTVILGDNGCGKTTIIECLKIACTGTLPPGARNGQSFIHDPKI 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.070e-22
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            +VIEFY PLT+I+G NGCGKTT+IECLK AC+G+LPPGAR+GQSFVHDPK+
Sbjct:   21 EVIEFYHPLTVILGDNGCGKTTVIECLKVACSGSLPPGARSGQSFVHDPKI 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: K3WA27_GLOUD (AAA_23 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA27_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 3.070e-22
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            ++IEFY PLT+I+G NGCGKTTIIECLK +CTG+LPPGAR GQSFVHDPK+
Sbjct:   21 EIIEFYHPLTVILGDNGCGKTTIIECLKISCTGSLPPGARGGQSFVHDPKI 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A5D6XIH6_9STRA (AAA_23 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIH6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.720e-22
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            ++IEF+ PLT+I+G NGCGKTTIIECLK  CTGALPPGAR GQSFVHDPK+
Sbjct:   21 EIIEFFHPLTVILGDNGCGKTTIIECLKIVCTGALPPGARGGQSFVHDPKI 71
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BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A6A3XDG6_9STRA (DNA repair protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XDG6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.990e-21
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            +V+EFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS VHDPK+
Sbjct:   21 EVVEFYHPLTVLLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLVHDPKI 71
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A0P1ARC4_PLAHL (Dna repair protein rad50 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ARC4_PLAHL)

HSP 1 Score: 94.7 bits (234), Expect = 1.990e-21
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            ++IEFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS VHDPK+
Sbjct:   21 EIIEFYHPLTILLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLVHDPKI 71
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Match: A0A484E4T8_BRELC (AAA_23 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4T8_BRELC)

HSP 1 Score: 94.7 bits (234), Expect = 1.990e-21
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVIEFYTPLTMIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV 153
            ++IEFY PLT+++G NGCGKTT+IECLK ACTG LPPGAR+GQS VHDPK+
Sbjct:   21 EIIEFYHPLTILLGDNGCGKTTVIECLKLACTGGLPPGARSGQSLVHDPKI 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106559.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G250_ECTSI8.180e-29100.00AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YS38_9STRA5.570e-2480.39AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
H3GA74_PHYRM3.950e-2374.51AAA_23 domain-containing protein n=1 Tax=Phytophth... [more]
A0A024GBH2_9STRA2.250e-2278.43Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A662WHK9_9STRA3.070e-2278.43Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WA27_GLOUD3.070e-2278.43AAA_23 domain-containing protein n=1 Tax=Globispor... [more]
A0A5D6XIH6_9STRA5.720e-2278.43AAA_23 domain-containing protein n=1 Tax=Pythium b... [more]
A0A6A3XDG6_9STRA1.990e-2174.51DNA repair protein n=6 Tax=Phytophthora TaxID=4783... [more]
A0A0P1ARC4_PLAHL1.990e-2174.51Dna repair protein rad50 n=1 Tax=Plasmopara halste... [more]
A0A484E4T8_BRELC1.990e-2174.51AAA_23 domain-containing protein n=1 Tax=Bremia la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106559contigEcto-sp8_S_contig106559:156..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score93.2
Seed ortholog evalue3e-17
Seed eggNOG ortholog2880.D7G250
Preferred nameRAD50
Model size153
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
Exons1
EggNOG free text desc.G-quadruplex DNA binding
EggNOG OGsCOG0419@1,KOG0962@2759
Cds size123
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.069433-CDS-Ecto-sp8_S_contig106559:155..2781681143162.069433-CDS-Ecto-sp8_S_contig106559:155..278Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106559 156..278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143162.0822816-UTR-Ecto-sp8_S_contig106559:278..3081681143162.0822816-UTR-Ecto-sp8_S_contig106559:278..308Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig106559 279..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106559.1018.1prot_Ecto-sp8_S_contig106559.1018.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106559 156..278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106559.1018.1

>prot_Ecto-sp8_S_contig106559.1018.1 ID=prot_Ecto-sp8_S_contig106559.1018.1|Name=mRNA_Ecto-sp8_S_contig106559.1018.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=41bp
MIVGANGCGKTTIIECLKYACTGALPPGARNGQSFVHDPKV
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mRNA from alignment at Ecto-sp8_S_contig106559:156..308-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106559.1018.1 ID=mRNA_Ecto-sp8_S_contig106559.1018.1|Name=mRNA_Ecto-sp8_S_contig106559.1018.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106559:156..308- (Ectocarpus species8 EcLAC_412)
CAGGTGATCGAGTTCTACACGCCCCTGACGATGATCGTCGGGGCGAACGG
CTGCGGCAAGACGACGATTATCGAGTGCCTCAAGTACGCGTGCACGGGCG
CGCTTCCCCCCGGTGCACGCAACGGCCAGTCGTTCGTCCACGATCCCAAG
GTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106559:156..308-

>mRNA_Ecto-sp8_S_contig106559.1018.1 ID=mRNA_Ecto-sp8_S_contig106559.1018.1|Name=mRNA_Ecto-sp8_S_contig106559.1018.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106559:156..308- (Ectocarpus species8 EcLAC_412)
ATGATCGTCGGGGCGAACGGCTGCGGCAAGACGACGATTATCGAGTGCCT
CAAGTACGCGTGCACGGGCGCGCTTCCCCCCGGTGCACGCAACGGCCAGT
CGTTCGTCCACGATCCCAAGGTG
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