mRNA_Ecto-sp8_S_contig10645.1005.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10645.1005.1
Unique NamemRNA_Ecto-sp8_S_contig10645.1005.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10645.1005.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 1.170e-65
Identity = 116/119 (97.48%), Postives = 116/119 (97.48%), Query Frame = 3 
Query:   87 MGMLVLVLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSVAGASYKLSACRLGVVEVDLFSGWLRSRGRLPCLGVVLASLDLRVEASFPEGHQDGDAAAAVRKAEA 443
            MGMLV VLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSVAGASYKLSACRLGVVEVDLFSGWLRSRGRLPCLGVVLASLDLRVEASFPEGH DGDAAAAV KAEA
Sbjct:    1 MGMLVFVLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSVAGASYKLSACRLGVVEVDLFSGWLRSRGRLPCLGVVLASLDLRVEASFPEGHHDGDAAAAVGKAEA 119
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BLAST of mRNA_Ecto-sp8_S_contig10645.1005.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 8.070e-61
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 3 
Query:   87 MGMLVLVLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSVAGASYKLSACRLGVVEVDLFSGWLRSRGRLPCLGVVLASLDLRVEASFPEGHQDGDAAAAVRKAE 440
            MGMLV VLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFS+AGASYKLSAC+LGVVEVDLFS WLRSRGRLPCLGVVLASL+LRVEASFPE H DGDAAA VRKAE
Sbjct:    1 MGMLVFVLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSIAGASYKLSACQLGVVEVDLFSDWLRSRGRLPCLGVVLASLNLRVEASFPEEHHDGDAAA-VRKAE 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10645.1005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7K0_ECTSI1.170e-6597.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIC1_9PHAE8.070e-6193.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10645contigEcto-sp8_S_contig10645:1096..3088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size443
Hectar predicted targeting categorysignal peptide
Exons4
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.4585943-UTR-Ecto-sp8_S_contig10645:1095..11551681143161.4585943-UTR-Ecto-sp8_S_contig10645:1095..1155Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10645 1096..1155 +
1681143161.4804254-UTR-Ecto-sp8_S_contig10645:2024..20501681143161.4804254-UTR-Ecto-sp8_S_contig10645:2024..2050Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10645 2025..2050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.491652-CDS-Ecto-sp8_S_contig10645:2050..21741681143161.491652-CDS-Ecto-sp8_S_contig10645:2050..2174Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10645 2051..2174 +
1681143161.5024347-CDS-Ecto-sp8_S_contig10645:2524..27311681143161.5024347-CDS-Ecto-sp8_S_contig10645:2524..2731Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10645 2525..2731 +
1681143161.5150256-CDS-Ecto-sp8_S_contig10645:3062..30881681143161.5150256-CDS-Ecto-sp8_S_contig10645:3062..3088Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10645 3063..3088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10645.1005.1prot_Ecto-sp8_S_contig10645.1005.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10645 2051..3088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10645.1005.1

>prot_Ecto-sp8_S_contig10645.1005.1 ID=prot_Ecto-sp8_S_contig10645.1005.1|Name=mRNA_Ecto-sp8_S_contig10645.1005.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=119bp
MGMLVLVLGSLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVS
FSVAGASYKLSACRLGVVEVDLFSGWLRSRGRLPCLGVVLASLDLRVEAS
FPEGHQDGDAAAAVRKAEA
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mRNA from alignment at Ecto-sp8_S_contig10645:1096..3088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10645.1005.1 ID=mRNA_Ecto-sp8_S_contig10645.1005.1|Name=mRNA_Ecto-sp8_S_contig10645.1005.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1993bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10645:1096..3088+ (Ectocarpus species8 EcLAC_412)
GCACAGGAGAGGACGGATGGTGATTCTGCGTGGGACGTGGCGGTAGATAT
TCTCCGGCAGGTGGGTTACGATGTCCTCTGTTTTCCGGTAAGGTTTTGAC
CTACAGAGAGAGGGAGGAGGGCAGTCGTGTTTTACTGCTGTCTTGAAATG
TCGTTGGCTTCAAGAGTTCAGAGGAGTCAGCCCGTGCTGCAGGATACCGC
AGGTCCGTGTGCATAGCAGCAGCAAGGTGGTGTGGGATGTGGGTTCGGCA
AGACAAAACTAACATCTTTTGTTTCTTCCAATGGCTTGCCGTTTGTTGCC
GTGCGCTAAATACTGAGAGACCAACGCAGCAGTAGTTGGGGCAAGGTTCC
ATATCGGGCGAGATCATGTGAACTGGTCCTGCAGCGCAGATATGTTCCAC
GGAGTGTGCATAGGTGGAGTAATCTACTTTCGGTGCGGTCGAACTACTTA
CAAGTAGATAAGGGCTCATGTGTAACAAGCTAACAGCGAAGCGTATCGAG
ACGTCTACCACAACGCTCCTCGCGTGATGCGGATTGATGCATTCGAGCTC
GGAAACACTGCTGCTGGTCACTGCTTACACTAAATAGGCTAGACGGTAAT
GGGTGCAGCGGTACATGCAGCTTGTGCAGGTGTCCGCGTTGATATCCAAA
ACGTATTTGCCGCTGTACTGCTGTAGGCGAGCAACGGCTGACGCCGCAGT
CAGTGGACACAATTCTCTTGTTGGTGGCTGTATTTCGTACTTTTGGAAAA
GCAGGTCGACCGCAGCTTTCAGGTGCTACTGTACATCCACGATTCCCGTA
GCGCTCCATTCTTACTGCGGGCGACCTGTCTCGTTCTTGCCACGAGCCGA
AGCGAGGTTTGCTTGGAGTGTTCACTTTTGGAGTGCGTTGCCTACCATAC
TACGTTCTGCAACCGTGCTTTATTTCCAGGAGAAAGTGCGCCCTCAGCCG
AAGAGATGGGGATGCTGGTGCTTGTGCTAGGCAGCCTAAAATGGGCGCTG
CTTTGCTTCGTCCTCGTGCTCGGGGTCGGCAAAGCGATCGCGCGAGTGGC
CAGCTGGGTCGCCAACAACGCCTGTCAAGGTGAGAGCCGCGGCTCGCACG
ACACACGCCGCCTAATAGCAGCAGCGGTCCGCTCTCACGAAACGTTAGAT
TTGCAGCTCTGCCCGATCATACTTGGTGGTTCAATCGCCTTTGCTTACAT
CGAACTCCCCGATTCCCTCGTATCACACACACGCACGTGCAGTGTGGCGT
CGACGAATGCCCGTCAGCTTCTACAACCAGTAGCGGCCCACCCTGACGAA
ACGTTCTGCCCGCTCATGTTTCGTAGTGCATCACCTCCGCAGCAGTTCGG
TAACGACACACCGGCTGTTTTGAAGAAACAGAGCCTTCACGTACTCCCCG
ATTTCCTCATGTCACACACACGCGTGCAGTGTGGCTGCGACGAAGGCCGG
TCAGCTTCTCTGTTGCCGGCGCTAGCTATAAGCTTAGCGCCTGCCGGCTG
GGTGTGGTAGAGGTCGACCTGTTCTCGGGTTGGCTGCGATCGCGGGGGCG
ACTGCCATGCCTTGGGGTGGTCTTGGCAAGCCTGGACTTGCGAGTGGAGG
CGTCGTTCCCTGAGGGGCACCAGGACGGCGATGCAGGTGGGTCCATAGTG
CTTGACACGAACAAATACATGTTTTTTTCTCGAGGGGCACGACTCCCGTT
CCAACTGCTCCTCGCCGGTGTGAAGTTCTGGGCTTCGGGGAGTTGATTTC
GGGGAAGGATCGTAGATTCAGGGAAACATACATGGCTGCTCGTCGAAAGG
CCTGCAAGAGTTTTGTGCGCTGCGATGCATGTTGAGCTTGTCCCCGTTCT
CGTCAAGATCTTGGGCGCACCGTCTTTTTTGCCAGTGTCGGGCGCTCCTG
CCTTTTTTACACTGCGCCGTGTTGCCCCGATGCACTGCCTCGTGTTCCAC
CCACCCACCCGAAGCAGCAGCCGCCGTCAGGAAGGCCGAAGCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10645:1096..3088+

>mRNA_Ecto-sp8_S_contig10645.1005.1 ID=mRNA_Ecto-sp8_S_contig10645.1005.1|Name=mRNA_Ecto-sp8_S_contig10645.1005.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10645:1096..3088+ (Ectocarpus species8 EcLAC_412)
ATGGGGATGCTGGTGCTTGTGCTAGGCAGCCTAAAATGGGCGCTGCTTTG
CTTCGTCCTCGTGCTCGGGGTCGGCAAAGCGATCGCGCGAGTGGCCAGCT
GGGTCGCCAACAACGCCTGTCAAGTGTGGCTGCGACGAAGGCCGGTCAGC
TTCTCTGTTGCCGGCGCTAGCTATAAGCTTAGCGCCTGCCGGCTGGGTGT
GGTAGAGGTCGACCTGTTCTCGGGTTGGCTGCGATCGCGGGGGCGACTGC
CATGCCTTGGGGTGGTCTTGGCAAGCCTGGACTTGCGAGTGGAGGCGTCG
TTCCCTGAGGGGCACCAGGACGGCGATGCAGCAGCCGCCGTCAGGAAGGC
CGAAGCT
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