mRNA_Ecto-sp8_S_contig1064.1003.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1064.1003.1
Unique NamemRNA_Ecto-sp8_S_contig1064.1003.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1064.1003.1 vs. uniprot
Match: D8LRI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI0_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 4.000e-75
Identity = 126/143 (88.11%), Postives = 131/143 (91.61%), Query Frame = 1 
Query:  733 MVMIVSGAVWASIMVTKCVISKVLIWKAFERCKRPDENREHETNSSDEEARDDGEDVPELAQEVDDEXXXDQQPVVCVTKRTLGTLKQGDGREPTPGEDRLQSESSTGDNSLDSRSDGSGEGGDYVPDSTMMMVTDYLFHFYV 1161
            MV+IVSGAVWA IMVTKCVISKVL+WKA ERC RPDENREH+TNSSDEEARDDGEDVPELAQEVDDE   DQQPV+  TKRTLGTLKQGDGREPT   DRLQ ESSTGDNSLDSRSDGSGEGGDYVPDSTMMMVTD+LFHFYV
Sbjct:    1 MVIIVSGAVWAGIMVTKCVISKVLVWKALERCVRPDENREHKTNSSDEEARDDGEDVPELAQEVDDEEEEDQQPVIGATKRTLGTLKQGDGREPTSRVDRLQPESSTGDNSLDSRSDGSGEGGDYVPDSTMMMVTDFLFHFYV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1064.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI0_ECTSI4.000e-7588.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1064contigEcto-sp8_S_contig1064:8455..10913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1201
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_004590.1
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1064.1003.1prot_Ecto-sp8_S_contig1064.1003.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1064 8492..10181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.3468513-UTR-Ecto-sp8_S_contig1064:8454..84911681143161.3468513-UTR-Ecto-sp8_S_contig1064:8454..8491Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1064 8455..8491 -
1681143161.4000313-UTR-Ecto-sp8_S_contig1064:10181..109131681143161.4000313-UTR-Ecto-sp8_S_contig1064:10181..10913Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1064 10182..10913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143161.3583035-CDS-Ecto-sp8_S_contig1064:8491..86581681143161.3583035-CDS-Ecto-sp8_S_contig1064:8491..8658Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1064 8492..8658 -
1681143161.3678682-CDS-Ecto-sp8_S_contig1064:9407..94861681143161.3678682-CDS-Ecto-sp8_S_contig1064:9407..9486Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1064 9408..9486 -
1681143161.3769605-CDS-Ecto-sp8_S_contig1064:9687..97571681143161.3769605-CDS-Ecto-sp8_S_contig1064:9687..9757Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1064 9688..9757 -
1681143161.388182-CDS-Ecto-sp8_S_contig1064:10065..101811681143161.388182-CDS-Ecto-sp8_S_contig1064:10065..10181Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1064 10066..10181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1064.1003.1

>prot_Ecto-sp8_S_contig1064.1003.1 ID=prot_Ecto-sp8_S_contig1064.1003.1|Name=mRNA_Ecto-sp8_S_contig1064.1003.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MVMIVSGAVWASIMVTKCVISKVLIWKAFERCKRPDENREHETNSSDEEA
RDDGEDVPELAQEVDDEEEEDQQPVVCVTKRTLGTLKQGDGREPTPGEDR
LQSESSTGDNSLDSRSDGSGEGGDYVPDSTMMMVTDYLFHFYV*
back to top

mRNA from alignment at Ecto-sp8_S_contig1064:8455..10913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1064.1003.1 ID=mRNA_Ecto-sp8_S_contig1064.1003.1|Name=mRNA_Ecto-sp8_S_contig1064.1003.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2459bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1064:8455..10913- (Ectocarpus species8 EcLAC_412)
GAAGGACGCCACGCTCGTCGTCTCCCATCGTTTATACAGTCTAGCTCACT
GATCCTGAGGGGGGTTGGCTCTCGACCTTCGTAGGTGTACACTTCACGCT
TCGCGCAGGATACCGCATGCCGCATGCCGCATATAACATAATGGAGGTCC
CGCCGCATGCCTTGCCGAACCGGAACTTCGTGGCGTGGTGAACCAACTCA
CCGACAGCCATTCGCGATCTCATCCGCGCTGGCTGACGTTCTGACGACGC
AACTGGGACGAAGGCATATATGCAAGCATGAAACACAATGGAGGCTGGAG
GCTGGAGGAGTACGTGGCAACCGCATGGGAAAAAGGAACGGGGTAACAAC
GGCTGCTTTTGCGGTTGTGCGTACTGCTGTACTGGGCCCTTTGGCATATT
CGACCGTGTAGAGACTGCTGTACAGCAGTACAGTCGTCTACACAGCAGTA
GTCTACGTAGATCCAGTCTACAGTAGTGTAGTTCGTTGCTCGCTAAACCA
GGATTTTTTTCTGCAGTAGATCGAGTCTGCAAGCTGCTTGCGTAAACCAG
GATACCAGGATCGTTTTCTGACAGTCTCGAGCTTGGTTCAACTGCCTCAC
CACGAATCAAGATCCAGCCGTGGGACCTCACCGATGTTGCTCCTCCTGTC
CAGTTCACTCTCAATCTCAACAACTTCAATTCAGCTCTCTCTCTCCTAGG
TAGCTTGCTTTCGAACGGACTTGAGAAGAACCATGGTAATGATTGTGAGC
GGAGCTGTCTGGGCGAGCATCATGGTGACCAAGTGCGTAATCTCCAAGGT
CTTGATATGGAAGGCCTTCGAACGATGCAAGCGGCCGGACGAGAACAGGT
GAAACACCCCCCTTCGATGCAGCACTGCTGTATCAAATAAGTGTATGTAG
GCTCGGTAGTGTACAATCGGTTTTGAAAAATGAACAGTTCATTGTACAAG
GTGTATAGGCATCCCTACCTTGGGAACGAGGGTCGATGTTAGACGAGAGA
ACATCTCACAACAAGCAAGCGCATTCCGTCAACCTCTCTACGCTACCCGC
CACGATACTGATCATCTTGCCACCAACAACCCACTCACCCCATACAAACC
ATACGCTGCAAATACCACATGATGTACGGACATACGTGTGTCATTAAATT
CCGCAGGGAACACGAGACCAACAGCAGTGACGAAGAAGCACGCGATGATG
GCGAAGATGTGCCAGAGCTTGCGCAGGTAGGTAGAGCTGAGCAGCCGTTG
TAACTCAGGTCAAAGTTGGTACCCAACGTGCAGCGGCGATTGATTCCGAA
TTCATTCGCGACTCGTCGATGATTTAGACTATTTCGTCCCTCAGCTAGCA
GTATGTGATGGTAGCTCGTACCATGTTTGCTCATCGCTAGGGCCGCACCC
GGCTGGTTTACACGCCCCCCGCAACAGGAAGTCGACGACGAGGAGGAAGA
GGACCAGCAGCCCGTGGTTTGCGTCACGAAAAGGACTCTCGGCACGCTGA
AGCAAGGTATTGTTGCACATGCGTATGAATAGTATTTCTCTCCTCACCAC
AAGAGTTTCTGTGGTCACAGTTCGTTTCTTGTTCGTTTAAATAACAGTAT
ATTCTTCCATGAAGAATCTATCTGGTATGTAGAGAGGTCACATTTCAGAA
TTATACCTCTACACTTCGGGAGAACCCATGGCCAAACGTTCTGGAACATG
CTGTGCCTAATCGCTACCTATGCATACCGTGGCATGACTCAAACTAACCG
TGCATGCATGTATTGTACCAGGTGACGGCCGGGAGCCGACATCGAGGGAG
GACCGCTTGCAGTCCGAGTCCTCTACCGGGGACAACTCGCTGGACTCCCG
ATCGGACAGCGGTGGCGAGCGTGGCGACTACGCAGTCCGCGATTCGGCAA
TCATGGTCACTGATTGTTTGTTTCATTTTTACGTTTGAGGTCTCAAACGT
AGAAAATCAAAATAGTTTGTGACCGTGATTGCCGAATCGCGGACTGCGTA
GTCGCTACGCTCGCCACCGCTGTCCGACCGGGAGTCCAGCGAGTTGTCCC
CGGCAGAGGACTCAGACTGCAAGCGGTCCTCCCCCGGTGTCGGCTCCCGG
CCGGCACCTTGTACAATACGTGCACGGTTGGGCACTTCAGAATTAGACCT
ATACACTTCGCGAGAACCCATGGCCAAACGTTCTGGAACATGCTGTGCCT
AATCGCTACCCATGCATACCGTGGCATAACTCGAACCGTGCACGTATTGT
ACCAGGTGACGGCCGGGAGCCGACACCGGGGGAGGACCGCTTGCAGTCCG
AGTCCTCTACCGGGGACAACTCGCTGGACTCCCGGTCGGACGGCAGTGGC
GAGGGAGGCGACTACGTCCCTGATTCGACGATGATGATGGTCACTGATTA
CTTGTTTCATTTTTACGTTTGAGATGCTGTTTATTGCGATTGAGACACAA
CCCGGGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1064:8455..10913-

>mRNA_Ecto-sp8_S_contig1064.1003.1 ID=mRNA_Ecto-sp8_S_contig1064.1003.1|Name=mRNA_Ecto-sp8_S_contig1064.1003.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1064:8455..10913- (Ectocarpus species8 EcLAC_412)
ATGGTAATGATTGTGAGCGGAGCTGTCTGGGCGAGCATCATGGTGACCAA
GTGCGTAATCTCCAAGGTCTTGATATGGAAGGCCTTCGAACGATGCAAGC
GGCCGGACGAGAACAGGGAACACGAGACCAACAGCAGTGACGAAGAAGCA
CGCGATGATGGCGAAGATGTGCCAGAGCTTGCGCAGGAAGTCGACGACGA
GGAGGAAGAGGACCAGCAGCCCGTGGTTTGCGTCACGAAAAGGACTCTCG
GCACGCTGAAGCAAGGTGACGGCCGGGAGCCGACACCGGGGGAGGACCGC
TTGCAGTCCGAGTCCTCTACCGGGGACAACTCGCTGGACTCCCGGTCGGA
CGGCAGTGGCGAGGGAGGCGACTACGTCCCTGATTCGACGATGATGATGG
TCACTGATTACTTGTTTCATTTTTACGTTTGA
back to top