mRNA_Ecto-sp8_S_contig106198.975.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106198.975.1
Unique NamemRNA_Ecto-sp8_S_contig106198.975.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: D8LNP4_ECTSI (PIH1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP4_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.310e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    4 ISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQEV 141
            ISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQEV
Sbjct:  174 ISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQEV 219
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: A0A6H5KCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.050e-12
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = -2 
Query:    3 MLDSPMRSCWQTLTNTFMPLSTNFVLITKPGRGEI 107
            MLDSPM SCWQ LTNTF  LS NFVLITKPGRGEI
Sbjct:    1 MLDSPMLSCWQKLTNTFQHLSNNFVLITKPGRGEI 35
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: A0A7S2B8J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8J4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.690e-7
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    4 ISPRPGFVIKTKLVDKGM-------KVFVNVCQHERIGESSMVKKLDKEGQEV 141
            I+P PGFVIKTK VD+         KVF+N+CQHE + +  M K+L+ EG+EV
Sbjct:  124 ITPEPGFVIKTKRVDQAGTAPGAVGKVFINLCQHEGVEKPVMKKRLNDEGEEV 176
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: A0A835ZG52_9STRA (Pre-RNA processing PIH1/Nop17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG52_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.720e-6
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 QISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKE-GQEVGV 147
            +++P PGFV+KTK +D G KVF+NVC  + IG     K+LD++ G+EV V
Sbjct:   84 KMTPDPGFVVKTKELDTGCKVFLNVCSSDLIGVPGPCKRLDEDTGEEVEV 133
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: A0A0G4GEX6_VITBC (PIH1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GEX6_VITBC)

HSP 1 Score: 50.8 bits (120), Expect = 9.510e-6
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 ISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQ-EVGVQQAA 159
            ++P+P FV+KTK +  GMK+F+N+CQ E +  S   + +D++GQ + GV  +A
Sbjct:   64 VTPKPLFVLKTKDIKSGMKLFINICQSEHLPPSHTQEFIDEQGQPQTGVHMSA 116
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: A0A7S3HLE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLE1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.730e-5
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    4 ISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQEV 141
            I+P  GF  KT  V  G+KVF+N+ QHE I   ++ KKLD +G+EV
Sbjct:   94 ITPSAGFSYKTSRVADGLKVFINMAQHELIDAPAIKKKLDDKGEEV 139
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BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Match: A0A150G8A4_GONPE (PIH1 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G8A4_GONPE)

HSP 1 Score: 48.5 bits (114), Expect = 6.190e-5
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 QISPRPGFVIKTKLVDKGMKVFVNVCQHERI 93
            +I+P PGFVIKT     GMKVF+NVC H+R+
Sbjct:   60 EITPEPGFVIKTSDTASGMKVFINVCSHDRV 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106198.975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LNP4_ECTSI1.310e-21100.00PIH1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KCS2_9PHAE4.050e-1285.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B8J4_9STRA5.690e-750.94Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835ZG52_9STRA2.720e-650.00Pre-RNA processing PIH1/Nop17-domain-containing pr... [more]
A0A0G4GEX6_VITBC9.510e-641.51PIH1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S3HLE1_9STRA1.730e-550.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A150G8A4_GONPE6.190e-561.29PIH1 domain-containing protein n=1 Tax=Gonium pect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106198contigEcto-sp8_S_contig106198:14..202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score95.9
Seed ortholog evalue7.2e-18
Seed eggNOG ortholog2880.D8LNP4
Preferred namePIH1D1
Model size189
KEGG koko:K12302,ko:K19751
KEGG TC2.A.1.14
KEGG Pathwayko04721,ko04723,ko04724,ko05033,map04721,map04723,map04724,map05033
Hectar predicted targeting categoryother localisation
GOsGO:0000491,GO:0000492,GO:0000976,GO:0001013,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001188,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006364,GO:0006396,GO:0006403,GO:0006457,GO:0006725,GO:0006807,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010466,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010951,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030162,GO:0030855,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032270,GO:0032502,GO:0032535,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033674,GO:0034470,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035065,GO:0035066,GO:0035067,GO:0042254,GO:0042325,GO:0042327,GO:0042393,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043281,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045859,GO:0045860,GO:0045861,GO:0045893,GO:0045935,GO:0045937,GO:0045943,GO:0046483,GO:0048254,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051219,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051336,GO:0051338,GO:0051346,GO:0051347,GO:0051569,GO:0051570,GO:0051573,GO:0051641,GO:0052547,GO:0052548,GO:0060255,GO:0060429,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0070761,GO:0070897,GO:0071168,GO:0071169,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0071900,GO:0071902,GO:0072594,GO:0080090,GO:0090066,GO:0090239,GO:0090240,GO:0090241,GO:0090304,GO:0097159,GO:0097255,GO:0097659,GO:1900109,GO:1900110,GO:1900112,GO:1900113,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901836,GO:1901838,GO:1901983,GO:1901984,GO:1901985,GO:1902275,GO:1902531,GO:1902533,GO:1902659,GO:1902661,GO:1902680,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1905268,GO:1905269,GO:1990837,GO:1990904,GO:2000112,GO:2000116,GO:2000117,GO:2000615,GO:2000617,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2000758,GO:2001141,GO:2001233,GO:2001234,GO:2001251,GO:2001252,GO:2001267,GO:2001268
Exons1
EggNOG free text desc.axonemal dynein complex assembly
EggNOG OGsKOG4356@1,KOG4356@2759
Cds size189
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.6315832-CDS-Ecto-sp8_S_contig106198:13..2021681143159.6315832-CDS-Ecto-sp8_S_contig106198:13..202Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106198 14..202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106198.975.1prot_Ecto-sp8_S_contig106198.975.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106198 14..202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106198.975.1

>prot_Ecto-sp8_S_contig106198.975.1 ID=prot_Ecto-sp8_S_contig106198.975.1|Name=mRNA_Ecto-sp8_S_contig106198.975.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
QISPRPGFVIKTKLVDKGMKVFVNVCQHERIGESSMVKKLDKEGQEVGVQ
QAAFRLVVGISL*
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mRNA from alignment at Ecto-sp8_S_contig106198:14..202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106198.975.1 ID=mRNA_Ecto-sp8_S_contig106198.975.1|Name=mRNA_Ecto-sp8_S_contig106198.975.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106198:14..202+ (Ectocarpus species8 EcLAC_412)
CAGATCTCACCCCGGCCTGGTTTCGTTATCAAGACGAAGTTGGTTGACAA
GGGCATGAAAGTGTTCGTCAACGTCTGCCAGCACGAGCGCATCGGCGAGT
CGAGCATGGTCAAGAAGCTAGACAAGGAAGGCCAAGAGGTAGGTGTGCAG
CAGGCTGCGTTTCGATTGGTTGTCGGAATCTCATTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106198:14..202+

>mRNA_Ecto-sp8_S_contig106198.975.1 ID=mRNA_Ecto-sp8_S_contig106198.975.1|Name=mRNA_Ecto-sp8_S_contig106198.975.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106198:14..202+ (Ectocarpus species8 EcLAC_412)
CAGATCTCACCCCGGCCTGGTTTCGTTATCAAGACGAAGTTGGTTGACAA
GGGCATGAAAGTGTTCGTCAACGTCTGCCAGCACGAGCGCATCGGCGAGT
CGAGCATGGTCAAGAAGCTAGACAAGGAAGGCCAAGAGGTAGGTGTGCAG
CAGGCTGCGTTTCGATTGGTTGTCGGAATCTCATTGTGA
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