mRNA_Ecto-sp8_S_contig106186.974.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig106186.974.1
Unique NamemRNA_Ecto-sp8_S_contig106186.974.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: D8LJ75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ75_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 7.370e-22
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGR+
Sbjct:   42 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRW 86
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A6H5JF81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF81_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.180e-21
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RAVSSVVDTLVTHPNVMNGAMLSWPQ GIQYVEGYALDEFCAGR+
Sbjct:  145 RAVSSVVDTLVTHPNVMNGAMLSWPQTGIQYVEGYALDEFCAGRW 189
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A7S2DKA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKA9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.500e-15
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            R ++SVVDTLVTHPNVMNGA + WP+  I Y EGYALDE+ AGR+
Sbjct:   58 RTIASVVDTLVTHPNVMNGAQMYWPECNILYTEGYALDEWAAGRW 102
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: UPI0019FC1A8C (DUF3326 domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019FC1A8C)

HSP 1 Score: 73.9 bits (180), Expect = 3.000e-14
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    7 LKRAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            L RA+++VVDTL+THPNVMNGA L WP A   YVEGY LD+F AGR+
Sbjct:   35 LARAIATVVDTLITHPNVMNGAQLYWPLANAHYVEGYGLDQFAAGRW 81
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A2W4VY59_9CYAN (Uncharacterized protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A2W4VY59_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.140e-14
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RA++SVVDTL+THPNVMNGA L WP A   YVEGY LD+F AGR+
Sbjct:   37 RAMASVVDTLITHPNVMNGAQLYWPMANAHYVEGYGLDQFAAGRW 81
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A5Q4E1R0_9CYAN (DUF3326 domain-containing protein n=1 Tax=Leptolyngbya sp. DLM2.Bin27 TaxID=2480213 RepID=A0A5Q4E1R0_9CYAN)

HSP 1 Score: 73.2 bits (178), Expect = 5.620e-14
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RA+++VVDTL+THPNVMNGA L WP A + YVEGY LD+F AGR+
Sbjct:   36 RAMAAVVDTLITHPNVMNGAQLYWPMANVFYVEGYGLDQFAAGRW 80
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A8J7JNG5_9CYAN (DUF3326 domain-containing protein n=1 Tax=Nodosilinea sp. LEGE 06152 TaxID=2777966 RepID=A0A8J7JNG5_9CYAN)

HSP 1 Score: 71.6 bits (174), Expect = 2.120e-13
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RA++SVVDTL+THPNVMNGA L WP     YVEGY LD+F AGR+
Sbjct:   40 RAIASVVDTLITHPNVMNGAQLYWPLPNAYYVEGYGLDQFAAGRW 84
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A835ZBV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.700e-13
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            R V+SVVD LVTHPNVMNGA L WP+  + Y EG+ LDEFCAGR+
Sbjct:   30 RVVASVVDHLVTHPNVMNGAALYWPEPNMLYAEGFVLDEFCAGRW 74
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BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: UPI00068BB699 (DUF3326 domain-containing protein n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI00068BB699)

HSP 1 Score: 70.9 bits (172), Expect = 3.870e-13
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RA++SVVDTL+THPNVMNGA L WP     YVEGY LD+F AGR+
Sbjct:   37 RAIASVVDTLITHPNVMNGAQLYWPLPNACYVEGYGLDQFAAGRW 81
[Close]
BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Match: A0A1U7J6C0_9CYAN (Uncharacterized protein n=6 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A1U7J6C0_9CYAN)

HSP 1 Score: 70.9 bits (172), Expect = 3.890e-13
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   13 RAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY 147
            RA++SVVDTL+THPNVMNGA L WP     YVEGY LD+F AGR+
Sbjct:   35 RAIASVVDTLITHPNVMNGAQLYWPLPNACYVEGYGLDQFAAGRW 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig106186.974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ75_ECTSI7.370e-2297.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF81_9PHAE4.180e-2195.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DKA9_9STRA8.500e-1568.89Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI0019FC1A8C3.000e-1468.09DUF3326 domain-containing protein n=1 Tax=Leptolyn... [more]
A0A2W4VY59_9CYAN3.140e-1471.11Uncharacterized protein n=2 Tax=Pseudanabaenales T... [more]
A0A5Q4E1R0_9CYAN5.620e-1468.89DUF3326 domain-containing protein n=1 Tax=Leptolyn... [more]
A0A8J7JNG5_9CYAN2.120e-1368.89DUF3326 domain-containing protein n=1 Tax=Nodosili... [more]
A0A835ZBV7_9STRA2.700e-1368.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00068BB6993.870e-1368.89DUF3326 domain-containing protein n=1 Tax=Leptolyn... [more]
A0A1U7J6C0_9CYAN3.890e-1368.89Uncharacterized protein n=6 Tax=Cyanobacteria/Mela... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig106186contigEcto-sp8_S_contig106186:283..429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.3
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D8LJ75
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Protein of unknown function (DUF3326)
EggNOG OGs2CNAI@1,2QUTI@2759
Cds size147
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.5981538-CDS-Ecto-sp8_S_contig106186:282..4291681143159.5981538-CDS-Ecto-sp8_S_contig106186:282..429Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig106186 283..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig106186.974.1prot_Ecto-sp8_S_contig106186.974.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig106186 283..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig106186.974.1

>prot_Ecto-sp8_S_contig106186.974.1 ID=prot_Ecto-sp8_S_contig106186.974.1|Name=mRNA_Ecto-sp8_S_contig106186.974.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=49bp
LLLKRAVSSVVDTLVTHPNVMNGAMLSWPQAGIQYVEGYALDEFCAGRY
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mRNA from alignment at Ecto-sp8_S_contig106186:283..429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig106186.974.1 ID=mRNA_Ecto-sp8_S_contig106186.974.1|Name=mRNA_Ecto-sp8_S_contig106186.974.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106186:283..429+ (Ectocarpus species8 EcLAC_412)
CTGCTGCTTAAAAGGGCGGTGTCGTCCGTGGTGGACACTTTGGTGACACA
CCCGAACGTCATGAACGGCGCGATGCTCAGCTGGCCCCAGGCGGGGATAC
AGTACGTCGAGGGGTATGCACTTGATGAGTTCTGCGCGGGAAGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig106186:283..429+

>mRNA_Ecto-sp8_S_contig106186.974.1 ID=mRNA_Ecto-sp8_S_contig106186.974.1|Name=mRNA_Ecto-sp8_S_contig106186.974.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp8_S_contig106186:283..429+ (Ectocarpus species8 EcLAC_412)
CTGCTGCTTAAAAGGGCGGTGTCGTCCGTGGTGGACACTTTGGTGACACA
CCCGAACGTCATGAACGGCGCGATGCTCAGCTGGCCCCAGGCGGGGATAC
AGTACGTCGAGGGGTATGCACTTGATGAGTTCTGCGCGGGAAGGTAC
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