mRNA_Ecto-sp8_S_contig1061.963.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE) HSP 1 Score: 539 bits (1389), Expect = 2.280e-189 Identity = 311/333 (93.39%), Postives = 318/333 (95.50%), Query Frame = 1
Query: 1 KSYLAVVQGAVDPESVPRREEEPEGWGEGRDGTGXXXXXX--RKRRPDSVQHTPAHGFFQRKKDLLLRAVELGETLSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEADAARFQAAQGAPDRGVFRTPGDGEGELRVDASVSEVPGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQESXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RGKRYWGRQEVQPAGVAGGKQEVILDVVAPDPFVFVDGELQL 984
KSYLAVVQGAVDPESVPRREEEP+GW EGRDG GXXXXXX RKRRPDSVQHTPAHGFFQRKKDLLLRA+ELGETLSPEDLAFSKL+WGDIKFDKAASRPFHSAAKADKIRAVAEA+AARFQAAQGAPDRGVFR PGDG+GELRVDASVSEVPGDFRMRLD+EAGGKGKPSRTFVKVLEHGSYRGR VTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQES XXXXXXXXXXXXXXXXXXXXXXXX RGKRYWGRQ+VQPA V GGKQEVILDVVAPDPFVFVDGELQL
Sbjct: 155 KSYLAVVQGAVDPESVPRREEEPDGWREGRDGNGXXXXXXXXRKRRPDSVQHTPAHGFFQRKKDLLLRAIELGETLSPEDLAFSKLSWGDIKFDKAASRPFHSAAKADKIRAVAEAEAARFQAAQGAPDRGVFRAPGDGDGELRVDASVSEVPGDFRMRLDEEAGGKGKPSRTFVKVLEHGSYRGRLVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPPSDAACSDTEAPAKQESGXXXXXXXXXXXXXXXXXXXXXXXXGGMGGGRGKRYWGRQKVQPARVTGGKQEVILDVVAPDPFVFVDGELQL 487
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A7S2GNM4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNM4_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.210e-24 Identity = 61/104 (58.65%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 448 VPGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDAD--------HTIPRMCLHAQSLTL----RLAP 723
VPGDFRMR G GKPSRT V+V+ HG Y+G+ VTKV++ P TGRRHQLRLH L GHPILGD TYG A PRMCLHA L L RLAP
Sbjct: 1 VPGDFRMRT-VHGSGVGKPSRTEVRVVAHGLYQGQPVTKVVLHPITGRRHQLRLHLLEAGHPILGDATYGPAACPSDLGEVDEPPRMCLHAHRLYLPFKHRLAP 103
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A5D6YT03_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YT03_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 9.120e-20 Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 1
Query: 178 KKDLLLRAVELGETLSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEA----DAARFQAAQGAPDRGVFRTPGDGEGELRVDAS------------VSEVPGD-FRMRLDKEAGGKGKPSRTFVKVLEHGSYR----GRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAPP 726
K L+ GE L+ ++ A+ L W D+ +A PF + DK R VAE D+ R Q A+ V + G E + AS ++E G+ FRM++ +A GK S T VL HG+ VTKVL+RP TGRRHQLRLH H G PI+GD TYGD D RM LHA L L +APP
Sbjct: 3 KARLVRERAAQGEPLTADEQAYVALKWRDLP--RAQQEPFKQHGQRDKERFVAELTAFLDSEREQVARKRKYESVETSSGGAEAGVAAAASAPEPVAYVFEDRIAEPSGEGFRMQIG-DARRPGKASSTLAFVLGHGTRAINGVDEPVTKVLLRPLTGRRHQLRLHLAHNGFPIVGDVTYGDEDDDAQRMLLHAWKLWL-VAPP 202
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: W2NEC5_PHYPR (PseudoU_synth_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NEC5_PHYPR) HSP 1 Score: 98.6 bits (244), Expect = 1.150e-19 Identity = 70/175 (40.00%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 220 LSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEADAARFQAAQGAPDRGVFRTPGDGEGELRV----DASVSEV---PGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 723
L+P +LAF+K+ W D+ K + AKADK R + E Q + + + + E V DA + E G FRM + EA K S T VL H Y G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 145 LTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRKYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 317
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A6G0XCR0_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCR0_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 3.560e-19 Identity = 77/207 (37.20%), Postives = 100/207 (48.31%), Query Frame = 1
Query: 163 GFFQRKKDLLLRAVELGETLSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEADA--------ARFQAA-QGAPDRG------VFRTPGDGE-------GELRVDASVSEVPGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRL 717
G QRK+ AV+ G TLSPE++ F + W D+ D + +H A ADK+R A+ A R+ Q +P R TP G + D + F+M + GK S T VL HG + G+ VTKVL+RP +GRRHQLRLH H G+PI+GD TYG D PRM LHA L L+
Sbjct: 223 GVVQRKQ-----AVD-GATLSPEEVDFLRKKWHDLPDD--VQQTYHERAAADKLRFDAQVKALECHQLPQVRYDIPLQSSPLRPRSMSELTLPTPKRSRLVTTEPMGYIFDDPIATSTTNSFQMEISPN----GKVSTTLAFVLGHGLFDGQPVTKVLLRPLSGRRHQLRLHLSHCGYPIVGDVTYGSEDDLAPRMMLHAWKLHLKF 417
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A0W8DGS8_PHYNI (RNA pseudouridylate synthase domain-containing protein 1 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DGS8_PHYNI) HSP 1 Score: 98.2 bits (243), Expect = 3.940e-19 Identity = 70/175 (40.00%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 220 LSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEADAARFQAAQGAPDRGVFRTPGDGEGELRV----DASVSEV---PGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 723
L+P +LAF+K+ W D+ K + AKADK R + E Q + + + + E V DA + E G FRM + EA K S T VL H Y G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 259 LTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRNYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 431
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN) HSP 1 Score: 98.2 bits (243), Expect = 4.290e-19 Identity = 70/175 (40.00%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 220 LSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEADAARFQAAQGAPDRGVFRTPGDGEGELRV----DASVSEV---PGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 723
L+P +LAF+K+ W D+ K + AKADK R + E Q + + + + E V DA + E G FRM + EA K S T VL H Y G VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 278 LTPAELAFTKMTWHDLT--KEEKDAYTEKAKADKQRFLKELSEFLSQEKVRLARKRNYESLDREDSEEPVAYIFDAPIIEPHRSTGVFRMLVGTEADAAAKQSTTICFVLGHAMYEGEPVTKVLLRPLNGRRHQLRLHMAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 450
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: M4BT04_HYAAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BT04_HYAAE) HSP 1 Score: 97.1 bits (240), Expect = 5.550e-19 Identity = 75/200 (37.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query: 169 FQRKKDLLLRAVELGET-------LSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAEADA--ARFQAAQGAPDRGVFRTPGDGEGE---LRVDASVSEVPGD---FRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 723
F ++ LLR + G+ L+P +LAF+K+ W D+ +K + + AK DK R + E +A ++ +A R D E DA + E FRM++ E K S T VL H YRG+ VTKVL+RP GRRHQLRLH H G PI GD TYG + PRM LHA + LR P
Sbjct: 157 FTMEQARLLRESQKGDIAGARARELTPTELAFTKMAWIDLAKEKKDA--YTEKAKTDKQRFLCELNAFLSKEKARLACQRAYECRDNSDKVDEPVAYVFDAPIVEPHRSRKVFRMQVGSETDTSAKQSTTVAFVLGHAMYRGQPVTKVLLRPLNGRRHQLRLHLAHHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRERP 354
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A7S2RMN8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMN8_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.230e-18 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 355 FQAAQGAPDRGVFRTPGDGEGELRVDASVSEVPGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYG 657
F ++G R + G L V ++S +P DFRMR+D +G+ ++T V VLEHGS G VTKVL+RP GRRHQLRLH LH+G+PILGD TYG
Sbjct: 158 FYTSEGGVVRDLLSDFGSSIPVLEVSGAISAIPDDFRMRIDPS---EGREAKTQVVVLEHGSLYGVDVTKVLLRPIQGRRHQLRLHCLHLGYPILGDATYG 255
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Match: A0A3M6VLV3_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLV3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.430e-18 Identity = 74/193 (38.34%), Postives = 98/193 (50.78%), Query Frame = 1
Query: 175 RKKDLLLRAVELGETLSPEDLAFSKLNWGDIKFDKAASRPFHSAAKADKIRAVAE-ADAARFQAAQGAPDRGVFRTPGDGEGELR------VDASVSEV---PGDFRMRLDKEAGGKGKPSRTFVKVLEHGSYRGRSVTKVLMRPHTGRRHQLRLHALHMGHPILGDTTYGDADHTIPRMCLHAQSLTLRLAP 723
RK+D + A EL +P +LAF+K+ W ++ K + AKADK R + E ++ + ++ A R R+ D E DA + E G FRM++ E K S T VL H Y G+ VTKVL+RP GRRHQLRLH + G PI GD TYG + PRM LHA + LR P
Sbjct: 255 RKRDAGVGACEL----TPVELAFTKMTWHELT--KEMKDAYTVKAKADKQRFLREFSEFLIKEKSRLAHKRQYERSDRDKSDETNEPVAYIFDAPILEPHRSTGVFRMQVGTETNASAKQSTTIAFVLGHAMYEGQPVTKVLLRPLNGRRHQLRLHLANHGFPIAGDVTYGSQEDEAPRMMLHAWRIWLRGRP 441 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1061.963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1061.963.1 >prot_Ecto-sp8_S_contig1061.963.1 ID=prot_Ecto-sp8_S_contig1061.963.1|Name=mRNA_Ecto-sp8_S_contig1061.963.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=329bp KSYLAVVQGAVDPESVPRREEEPEGWGEGRDGTGGGGGGGRKRRPDSVQHback to top mRNA from alignment at Ecto-sp8_S_contig1061:15018..17421- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1061.963.1 ID=mRNA_Ecto-sp8_S_contig1061.963.1|Name=mRNA_Ecto-sp8_S_contig1061.963.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2404bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1061:15018..17421- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1061:15018..17421- >mRNA_Ecto-sp8_S_contig1061.963.1 ID=mRNA_Ecto-sp8_S_contig1061.963.1|Name=mRNA_Ecto-sp8_S_contig1061.963.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1061:15018..17421- (Ectocarpus species8 EcLAC_412)back to top |