mRNA_Ecto-sp8_S_contig1061.962.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1061.962.1
Unique NamemRNA_Ecto-sp8_S_contig1061.962.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1061.962.1 vs. uniprot
Match: D7FMC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMC0_ECTSI)

HSP 1 Score: 619 bits (1597), Expect = 2.410e-221
Identity = 330/353 (93.48%), Postives = 336/353 (95.18%), Query Frame = 3 
Query:   57 MSVAPVATVSPVFSDEPPTAVIVANEPVPAEGGGWISATSSPGAAGASAVVL-EEHAADVESGTRRPIPTRAAAAPAAGRPTADDVEKSCGLTSRRWHQLFALGIGLLEAAFSLDNAIAEDAFKIEDAASFVFSASAVQESVGLAVMLLLSLCRARVGEQDTVMEGFGSPLAILVNGVRQTDRSLTKTGHFGAMCQAAAVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLITNTVFCAGYFRNLVVVSRLDSALDPDNPAVGLTYALIALPVGVDVAEILFLFLGGQSWNATILALLDVGVTAVVVFPFGYKRFMTAFPEAARRLGLDSGRACDHY-CCCNLDTLLYVVFV 1109
            MSVAPVATVSPVFSDEPPTAVI+ANEPVPAEGGGWISATSS            EEHAADVESGTRRPIPTRAAAAPAAG PTADDVEKSCGLTSRRWHQLFALGIGLLEAAFSL+NAIAEDAFKIEDAASFVFSASAVQESVGLAVMLLLSLCRARVGEQD VME FGSPLAILVNGVRQTDRSLTKTGHFGAMCQAA VAVTGLVLLQKVDARGFVILFYALLVLFCGFCL+TNTVFCAGYFRNLVVVSRLDSALDPDNPAVGLTYALIALP+GVDVAEILFLFLGGQSWNATILALLDVGVTA+VVFPFGYKRFMTAFPEAARRLGLDSGRACDHY CCCNL+TLLYVVFV
Sbjct:    1 MSVAPVATVSPVFSDEPPTAVILANEPVPAEGGGWISATSSXXXXXXXXXXXXEEHAADVESGTRRPIPTRAAAAPAAGGPTADDVEKSCGLTSRRWHQLFALGIGLLEAAFSLNNAIAEDAFKIEDAASFVFSASAVQESVGLAVMLLLSLCRARVGEQDAVMEEFGSPLAILVNGVRQTDRSLTKTGHFGAMCQAAVVAVTGLVLLQKVDARGFVILFYALLVLFCGFCLVTNTVFCAGYFRNLVVVSRLDSALDPDNPAVGLTYALIALPLGVDVAEILFLFLGGQSWNATILALLDVGVTAMVVFPFGYKRFMTAFPEAARRLGLDSGRACDHYYCCCNLETLLYVVFV 353
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1061.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMC0_ECTSI2.410e-22193.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1061contigEcto-sp8_S_contig1061:12943..14245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1303
Hectar predicted targeting categoryother localisation
Exons1
Cds size1056
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.05466-UTR-Ecto-sp8_S_contig1061:12942..129981681143159.05466-UTR-Ecto-sp8_S_contig1061:12942..12998Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1061 12943..12998 +
1681143159.071941-UTR-Ecto-sp8_S_contig1061:14054..142451681143159.071941-UTR-Ecto-sp8_S_contig1061:14054..14245Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1061 14055..14245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143159.0631979-CDS-Ecto-sp8_S_contig1061:12998..140541681143159.0631979-CDS-Ecto-sp8_S_contig1061:12998..14054Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1061 12999..14054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1061.962.1prot_Ecto-sp8_S_contig1061.962.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1061 12999..14054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1061.962.1

>prot_Ecto-sp8_S_contig1061.962.1 ID=prot_Ecto-sp8_S_contig1061.962.1|Name=mRNA_Ecto-sp8_S_contig1061.962.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=352bp
MSVAPVATVSPVFSDEPPTAVIVANEPVPAEGGGWISATSSPGAAGASAV
VLEEHAADVESGTRRPIPTRAAAAPAAGRPTADDVEKSCGLTSRRWHQLF
ALGIGLLEAAFSLDNAIAEDAFKIEDAASFVFSASAVQESVGLAVMLLLS
LCRARVGEQDTVMEGFGSPLAILVNGVRQTDRSLTKTGHFGAMCQAAAVA
VTGLVLLQKVDARGFVILFYALLVLFCGFCLITNTVFCAGYFRNLVVVSR
LDSALDPDNPAVGLTYALIALPVGVDVAEILFLFLGGQSWNATILALLDV
GVTAVVVFPFGYKRFMTAFPEAARRLGLDSGRACDHYCCCNLDTLLYVVF
V*
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mRNA from alignment at Ecto-sp8_S_contig1061:12943..14245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1061.962.1 ID=mRNA_Ecto-sp8_S_contig1061.962.1|Name=mRNA_Ecto-sp8_S_contig1061.962.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1061:12943..14245+ (Ectocarpus species8 EcLAC_412)
TCTGGGTTTGCACCAGCTGGCACACAGCGAAGCTGCAACCCTCGGACGCC
GTCCGGATGAGCGTAGCTCCAGTGGCAACCGTATCTCCAGTGTTCTCTGA
CGAGCCCCCAACAGCAGTGATAGTGGCGAACGAACCGGTCCCAGCTGAAG
GCGGAGGCTGGATTTCGGCAACCTCAAGTCCTGGTGCTGCTGGTGCTTCT
GCTGTTGTTCTTGAAGAACACGCCGCCGATGTGGAGTCCGGTACAAGACG
ACCAATACCCACCCGTGCTGCTGCCGCGCCGGCAGCTGGAAGACCAACCG
CTGATGATGTTGAAAAGAGCTGTGGCCTGACTTCGCGTCGCTGGCACCAG
CTCTTCGCTCTGGGCATCGGTCTGCTGGAGGCAGCGTTCAGCCTCGACAA
TGCCATCGCTGAGGACGCGTTCAAGATCGAGGACGCTGCGAGCTTCGTCT
TCTCTGCGTCGGCTGTCCAGGAGTCCGTCGGCCTAGCCGTGATGCTTCTT
CTCTCGCTATGCAGAGCAAGAGTTGGGGAGCAGGATACGGTGATGGAAGG
GTTTGGCTCGCCGCTTGCGATTCTGGTGAACGGCGTTCGGCAGACAGACA
GGTCTTTAACCAAGACTGGGCATTTCGGCGCGATGTGCCAGGCGGCGGCC
GTGGCCGTAACAGGCCTCGTGCTGCTACAGAAGGTGGACGCGAGGGGCTT
CGTCATTCTCTTCTACGCCCTCTTGGTGCTCTTCTGCGGTTTCTGCCTGA
TCACGAACACCGTCTTCTGTGCGGGCTACTTCCGGAACCTGGTCGTCGTC
TCTAGGTTAGACTCTGCGCTTGATCCTGACAACCCGGCTGTCGGCTTGAC
TTACGCCTTGATTGCACTGCCAGTTGGTGTCGATGTCGCTGAGATTCTGT
TTTTGTTCCTCGGAGGGCAATCGTGGAACGCTACAATACTGGCATTGTTG
GATGTGGGTGTGACGGCCGTGGTCGTCTTTCCTTTCGGGTACAAGAGGTT
CATGACAGCTTTTCCAGAGGCCGCGCGGCGCCTGGGACTGGACTCAGGCC
GCGCGTGCGATCACTACTGTTGCTGTAACCTGGACACCCTGTTGTACGTT
GTTTTCGTTTGAAATATATATGGCGGTGGCCACTCTGAAACGGCTGTTAC
CGAAATTTGAAGGGCATGTGTTGATAGACGTACGTGCTTGTAAGGTGTAT
GTTGTGCTGGGTATATAAAGTATTTAAGTTTGTATGTCGTCCCGTGTGCC
ATCGGTTGCGATGAGGGTTGGTTCGTTTCCTGTGAATACTTGTGTTAGCT
GGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1061:12943..14245+

>mRNA_Ecto-sp8_S_contig1061.962.1 ID=mRNA_Ecto-sp8_S_contig1061.962.1|Name=mRNA_Ecto-sp8_S_contig1061.962.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1061:12943..14245+ (Ectocarpus species8 EcLAC_412)
ATGAGCGTAGCTCCAGTGGCAACCGTATCTCCAGTGTTCTCTGACGAGCC
CCCAACAGCAGTGATAGTGGCGAACGAACCGGTCCCAGCTGAAGGCGGAG
GCTGGATTTCGGCAACCTCAAGTCCTGGTGCTGCTGGTGCTTCTGCTGTT
GTTCTTGAAGAACACGCCGCCGATGTGGAGTCCGGTACAAGACGACCAAT
ACCCACCCGTGCTGCTGCCGCGCCGGCAGCTGGAAGACCAACCGCTGATG
ATGTTGAAAAGAGCTGTGGCCTGACTTCGCGTCGCTGGCACCAGCTCTTC
GCTCTGGGCATCGGTCTGCTGGAGGCAGCGTTCAGCCTCGACAATGCCAT
CGCTGAGGACGCGTTCAAGATCGAGGACGCTGCGAGCTTCGTCTTCTCTG
CGTCGGCTGTCCAGGAGTCCGTCGGCCTAGCCGTGATGCTTCTTCTCTCG
CTATGCAGAGCAAGAGTTGGGGAGCAGGATACGGTGATGGAAGGGTTTGG
CTCGCCGCTTGCGATTCTGGTGAACGGCGTTCGGCAGACAGACAGGTCTT
TAACCAAGACTGGGCATTTCGGCGCGATGTGCCAGGCGGCGGCCGTGGCC
GTAACAGGCCTCGTGCTGCTACAGAAGGTGGACGCGAGGGGCTTCGTCAT
TCTCTTCTACGCCCTCTTGGTGCTCTTCTGCGGTTTCTGCCTGATCACGA
ACACCGTCTTCTGTGCGGGCTACTTCCGGAACCTGGTCGTCGTCTCTAGG
TTAGACTCTGCGCTTGATCCTGACAACCCGGCTGTCGGCTTGACTTACGC
CTTGATTGCACTGCCAGTTGGTGTCGATGTCGCTGAGATTCTGTTTTTGT
TCCTCGGAGGGCAATCGTGGAACGCTACAATACTGGCATTGTTGGATGTG
GGTGTGACGGCCGTGGTCGTCTTTCCTTTCGGGTACAAGAGGTTCATGAC
AGCTTTTCCAGAGGCCGCGCGGCGCCTGGGACTGGACTCAGGCCGCGCGT
GCGATCACTACTGTTGCTGTAACCTGGACACCCTGTTGTACGTTGTTTTC
GTTTGA
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