mRNA_Ecto-sp8_S_contig10601.947.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10601.947.1
Unique NamemRNA_Ecto-sp8_S_contig10601.947.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10601.947.1 vs. uniprot
Match: A0A6H5JLH7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7
Identity = 33/103 (32.04%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:   16 QSFHFLVDVAEYQDLLKVSSGDEHINDDFKHFVGIVKEYIKIGSNSEIIIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLAENLLNKFKATPD 324
            +S+ F+V   +Y++   +S  +E     +K F+ I +EY++  S  E+ I+ + +  ++ L +   ++SL  + R  V     KE++ ML ENLLNKFK TP+
Sbjct:  218 ESWDFIVAACKYEE---ISDPEEQ----YKMFLRITEEYLRPTSPQEVNISSKMQAKMVSLQDSVKFSSLDGDSRRNVLQEPLKEVVRMLEENLLNKFKQTPE 313
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BLAST of mRNA_Ecto-sp8_S_contig10601.947.1 vs. uniprot
Match: D7G0P7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P7_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.830e-7
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  118 IVKEYIKIGSNSEIIIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLAENLLNKFKAT 318
            +V EY+K G+ SEI I+  TK +I+EL +  A+ASL  + R  +F  AE+EI +ML +NL+ KF A+
Sbjct:  113 MVNEYVKDGAPSEINISSNTKHNIMELTKIEAFASLDQDARKLIFVKAEREIRSMLEDNLMAKFLAS 179
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BLAST of mRNA_Ecto-sp8_S_contig10601.947.1 vs. uniprot
Match: A0A6H5KD71_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD71_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.470e-6
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   16 QSFHFLVDVAEYQDLLKVSSGDEHINDDFKHFVGIVKEYIKIGSNSEIIIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLAENLLNKFKATPD 324
            +S+ F+V   +Y++   +S  +E     ++ F+ I +EY++  S  E+ I  + +  ++ L +   ++SL  + R  V     KEI+ ML ENLLNKFK TP+
Sbjct:  180 ESWDFIVAACKYEE---ISDPEEQ----YEMFLRITEEYLQPTSPQEVNIGSKMQAKMVSLQDSVKFSSLDGDSRRNVLQEPLKEIVRMLEENLLNKFKQTPE 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10601.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLH7_9PHAE3.100e-732.04RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P7_ECTSI6.830e-746.27RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KD71_9PHAE1.470e-632.04RGS domain-containing protein n=3 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10601contigEcto-sp8_S_contig10601:1618..2179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.4
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D8LTR6
Model size326
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003060.2
Cds size324
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143158.123156-CDS-Ecto-sp8_S_contig10601:1617..18481681143158.123156-CDS-Ecto-sp8_S_contig10601:1617..1848Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10601 1618..1848 +
1681143158.1328456-CDS-Ecto-sp8_S_contig10601:2086..21791681143158.1328456-CDS-Ecto-sp8_S_contig10601:2086..2179Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10601 2087..2179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10601.947.1prot_Ecto-sp8_S_contig10601.947.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10601 1618..2179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10601.947.1

>prot_Ecto-sp8_S_contig10601.947.1 ID=prot_Ecto-sp8_S_contig10601.947.1|Name=mRNA_Ecto-sp8_S_contig10601.947.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=108bp
CCSDTQSFHFLVDVAEYQDLLKVSSGDEHINDDFKHFVGIVKEYIKIGSN
SEIIIACRTKTSIIELGERSAYASLCLEDRITVFNLAEKEIITMLAENLL
NKFKATPD
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mRNA from alignment at Ecto-sp8_S_contig10601:1618..2179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10601.947.1 ID=mRNA_Ecto-sp8_S_contig10601.947.1|Name=mRNA_Ecto-sp8_S_contig10601.947.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=562bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10601:1618..2179+ (Ectocarpus species8 EcLAC_412)
TGTTGTAGTGATACGCAGTCGTTCCATTTCTTGGTCGACGTGGCCGAGTA
TCAGGACTTGCTCAAAGTCAGCAGTGGTGACGAGCACATCAACGATGACT
TCAAGCACTTTGTCGGCATTGTCAAAGAGTACATCAAGATCGGTTCCAAC
TCCGAAATTATCATCGCCTGCCGGACCAAAACGAGCATTATCGAACTCGG
CGAACGGTCCGCATACGCCTCCCTTTGCCTGGTGAGTGGAAATCAACGAA
CGGTTTCCGATTCGCCGATGCTGCAACGAAGACTGGTGTACGGTGTTTTC
TGCTTTCTTTCCCGCCGTTCTACCAGCCTCGTTTGGATTGGTTTGACTCG
AGGACCCCTTCTTTGTCTTCGTGGTTTGGTGTCCGACAGCTCTCACGAAT
GCACGTTCCCTCGTGGAATTCGAAGGGTAAATGCTCGCTGGCAATGTGCC
CCTTTGTGTTTTGCCGCAGGAGGACCGCATCACAGTGTTCAACCTGGCCG
AGAAGGAAATTATCACCATGTTGGCGGAAAACCTGCTGAACAAGTTCAAA
GCCACGCCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10601:1618..2179+

>mRNA_Ecto-sp8_S_contig10601.947.1 ID=mRNA_Ecto-sp8_S_contig10601.947.1|Name=mRNA_Ecto-sp8_S_contig10601.947.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10601:1618..2179+ (Ectocarpus species8 EcLAC_412)
TGTTGTAGTGATACGCAGTCGTTCCATTTCTTGGTCGACGTGGCCGAGTA
TCAGGACTTGCTCAAAGTCAGCAGTGGTGACGAGCACATCAACGATGACT
TCAAGCACTTTGTCGGCATTGTCAAAGAGTACATCAAGATCGGTTCCAAC
TCCGAAATTATCATCGCCTGCCGGACCAAAACGAGCATTATCGAACTCGG
CGAACGGTCCGCATACGCCTCCCTTTGCCTGGAGGACCGCATCACAGTGT
TCAACCTGGCCGAGAAGGAAATTATCACCATGTTGGCGGAAAACCTGCTG
AACAAGTTCAAAGCCACGCCAGAC
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