mRNA_Ecto-sp8_S_contig1056.878.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1056.878.1
Unique NamemRNA_Ecto-sp8_S_contig1056.878.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1056.878.1 vs. uniprot
Match: D7G8I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8I5_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 4.440e-137
Identity = 234/317 (73.82%), Postives = 237/317 (74.76%), Query Frame = 1 
Query:    1 MDVALEDINFLLSDLDLGVVGHQDGEDNFKKSSVVVTEQVRALEAAFLARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSELQLLCIEAHRRRKEVR-----------------------------------------------------NAKHPRKPPPSHGGESAGGXXXXXXXXRAADSSGGGDEEKFADLPPALRIKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKTTKAALPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR 792
            MDVALED+NFLLSDLDLGVVGHQDGEDN KKSSVVVTEQVRALEAA LARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSELQLLCIEAHRRRKE +                                                     +    RK    HGGESAGG    XXXX         DEEKFADLPPALR KRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKT KA LPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR
Sbjct:    1 MDVALEDVNFLLSDLDLGVVGHQDGEDNLKKSSVVVTEQVRALEAA-LARQQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSELQLLCIEAHRRRKESKPLLDGLELTAAQKQTVDRVHAAIAADFALRRLMLLRRCDVTVRSFLRDSISGGSGVGERK----HGGESAGGKGGQXXXXXXXXXXXXXDEEKFADLPPALRTKRQALLDKPREITVDDALIAPTSVARQHTHKTAEEYDGDGGGHGEHSTKTKKAVLPTADIAEVSDRGGRVSDARGGPVWKTRKEFDKAAAAAAFSGKR 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1056.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8I5_ECTSI4.440e-13773.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1056contigEcto-sp8_S_contig1056:7868..10654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1059
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionUncharacterised protein family FAM98
Ec32 orthologEc-14_003140.1
Cds size1059
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143154.0203667-CDS-Ecto-sp8_S_contig1056:7867..83261681143154.0203667-CDS-Ecto-sp8_S_contig1056:7867..8326Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1056 7868..8326 -
1681143154.029499-CDS-Ecto-sp8_S_contig1056:8524..86291681143154.029499-CDS-Ecto-sp8_S_contig1056:8524..8629Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1056 8525..8629 -
1681143154.0386548-CDS-Ecto-sp8_S_contig1056:8921..90351681143154.0386548-CDS-Ecto-sp8_S_contig1056:8921..9035Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1056 8922..9035 -
1681143154.0492475-CDS-Ecto-sp8_S_contig1056:9657..97691681143154.0492475-CDS-Ecto-sp8_S_contig1056:9657..9769Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1056 9658..9769 -
1681143154.063722-CDS-Ecto-sp8_S_contig1056:10385..106541681143154.063722-CDS-Ecto-sp8_S_contig1056:10385..10654Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1056 10386..10654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1056.878.1prot_Ecto-sp8_S_contig1056.878.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1056 7868..10654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1056.878.1

>prot_Ecto-sp8_S_contig1056.878.1 ID=prot_Ecto-sp8_S_contig1056.878.1|Name=mRNA_Ecto-sp8_S_contig1056.878.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=353bp
MDVALEDINFLLSDLDLGVVGHQDGEDNFKKSSVVVTEQVRALEAAFLAR
QQDGRPEEADDTGGGAGIVNVAIARGMPRPDGNTDDSTSRAEALNFMRSE
LQLLCIEAHRRRKEVRNAKHPRKPPPSHGGESAGGKGGQGEAGRAADSSG
GGDEEKFADLPPALRIKRQALLDKPREITVDDALIAPTSVARQHTHKTAE
EYDGDGGGHGEHSTKTTKAALPTADIAEVSDRGGRVSDARGGPVWKTRKE
FDKAAAAAAFSGKRGGGRGGGRGSGGKRGEKKRGGGGGRGAGEEQGKKER
GNRRGGGGGGGGGGGGGGGGGGGGGRGGGEGQGGGNKRKWGGRGDRAPGQ
RR*
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mRNA from alignment at Ecto-sp8_S_contig1056:7868..10654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1056.878.1 ID=mRNA_Ecto-sp8_S_contig1056.878.1|Name=mRNA_Ecto-sp8_S_contig1056.878.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2787bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1056:7868..10654- (Ectocarpus species8 EcLAC_412)
ATGGACGTCGCTTTGGAAGATATAAATTTTCTCCTGTCCGACCTTGATCT
TGGCGTGGTCGGGCATCAGGATGGCGAGGACAACTTTAAAAAATCCTCCG
TCGTGGTAACAGAGCAAGTACGGGCTCTCGAGGCAGCTTTTTTAGCTCGG
CAGCAGGATGGCCGACCGGAAGAGGCGGATGATACTGGGGGCGGAGCGGG
GATCGTGAATGTTGCGATAGCACGCGGTATGCCGAGACCAGACGGAAACA
CCGATGATTCAACGTCAAGGTACTGAATATCATCGTATATCCATTTCGTC
TGTCAATCGGTGTTGAGCTGCTGCTGGTATGCACAGCAGTAGCGCACTGC
AAGCTTCATGTTGCCAATCTACTGCGGTACACCACACCAGACCTGCACCG
TGCTATTTATTACGTCCACACGTAGAATGCGCAGAGCATAGGAGAGATTC
ACTTTTCCCGAAAAGATGAGGTTATGCGAGTACCAACTGCGAAAAGGGAA
GGATTTGGGTGTCTGTACCTGTAGCGCCCTGCGGAGTGCCCTAGAGCAGT
GGTTCCTACACAAAGAGTTTTGTGTCTTTTGATGTGTGCACGGTAATGAT
GCGCCTGCCCCTGGGTTGGGAACCTTGCCGTGTAATTGAGGGTTAGGTTT
ACTGTACACACGGACAGTATTAGGTGTAAGATCCGCAAGAGGACATCCTA
TTTACCACACATGGATACACCGTTCACCGTAGAGGTTGATTTTGCAGAGG
CTGACCAAGAGCATCAAGTTCCCTTGTGTGCTCTGTGTCTGTGTGTCTTC
CCTTTCATTGCTGTGTTGCCCCTTTTGTCCCTACACTCGCTCGCTCGCTG
TGCGATTCGTTTTCCTATTGTACCCGTTCTTCTAGGGCTGAGGCACTGAA
CTTCATGCGCTCCGAACTTCAGCTCCTGTGCATAGAAGCGCATCGGAGAC
GTAAAGAGGTGAGAAACGCGAAACACCCACGCAAGCCTCCTCCTTCTGTG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CGGTGTCGGAGAAAGAAAGCACGGTGGAGAGAGCGCAGGGGGGAAGGGGG
GACAAGGAGAGGCAGGAAGAGCTGCGGATAGTAGTGGTGGTGGCGACGAA
GAGAAGTTTGCCGACCTTCCGCCCGCCTTGAGAGTGAGAGACGACCCCTG
TATGTTGAGATGGGAAGGATCATTTTATTCGCAGAGCAGTATGGAGGTCA
GGATATGGAGATTCAGGAAGCACAGACGCACGTACACTCAACAGTAGTGG
TAATTGTTTCGTGTACAATAATATTCTCAAGTGTTTGGTACAATGGTTGT
GTGCGATCGATTACAGTAGCACCCCCTGTCTAACGATTGTTCAAGTTGAC
GTTGCAAGAAGAAGATACATGTATGTGATCGTGATGGTTGCCCCCCCACT
GGTGACGCTTCGCAATCCTTTGCAGATAAAGCGACAGGCGCTCTTGGACA
AGCCTCGGGAAATCACGGTAGATGACGCGCTGATCGCTCCGACTTCGGTG
GCTCGGCAGCATACCCACAAGACAGCAGAAGTGAGTACGCTATATTTTCC
TATGTGCTACCATCAACTATTTTGATCTGATTTTGCTCATTGAATCAGCG
CTCTAGTCCCATACAGGCGACAAGGATATCCCTTCTCTGTCATACATCTG
CCCCCCGCTTTGCTTTCCCCCTCTCTCCATGCCCCCCACCTGACACTTGT
TTCCGATTTTTTCATTTTAACCCAAAAGGAATACGACGGCGACGGTGGCG
GCCACGGCGAGCATTCCACGAAGACAACGAAGGCTGCCTTACCAACCGCC
GACATCGCCGAGGTTTCTGATCGCGGCGGGCGCGTGAGCGATGCCCGCGG
CGGGCCAGTCTGGAAGACCCGTAAGGAATTCGACAAAGCTGCCGCTGCTG
CTGCTTTCTCAGGGAAAAGGGGTGGCGGTCGTGGCGGCGGGCGCGGCAGT
GGTGGCAAGCGAGGCGAGAAGAAAAGAGGCGGCGGCGGTGGAAGAGGTGC
GGGCGAGGAGCAAGGGAAAAAGGAGCGTGGGAACCGTCGTGGCGGTGGCG
GTGGTGGTGGTGGTGGTGGCGGCGGGGGGGGTGGGGGTGGGGGAGGGGGA
GGGAGAGGTGGTGGTGAAGGGCAGGGTGGAGGGAACAAGAGGAAGTGGGG
AGGGCGTGGAGACCGGGCACCGGGTCAGCGCAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1056:7868..10654-

>mRNA_Ecto-sp8_S_contig1056.878.1 ID=mRNA_Ecto-sp8_S_contig1056.878.1|Name=mRNA_Ecto-sp8_S_contig1056.878.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1056:7868..10654- (Ectocarpus species8 EcLAC_412)
ATGGACGTCGCTTTGGAAGATATAAATTTTCTCCTGTCCGACCTTGATCT
TGGCGTGGTCGGGCATCAGGATGGCGAGGACAACTTTAAAAAATCCTCCG
TCGTGGTAACAGAGCAAGTACGGGCTCTCGAGGCAGCTTTTTTAGCTCGG
CAGCAGGATGGCCGACCGGAAGAGGCGGATGATACTGGGGGCGGAGCGGG
GATCGTGAATGTTGCGATAGCACGCGGTATGCCGAGACCAGACGGAAACA
CCGATGATTCAACGTCAAGGGCTGAGGCACTGAACTTCATGCGCTCCGAA
CTTCAGCTCCTGTGCATAGAAGCGCATCGGAGACGTAAAGAGGTGAGAAA
CGCGAAACACCCACGCAAGCCTCCTCCTTCTCACGGTGGAGAGAGCGCAG
GGGGGAAGGGGGGACAAGGAGAGGCAGGAAGAGCTGCGGATAGTAGTGGT
GGTGGCGACGAAGAGAAGTTTGCCGACCTTCCGCCCGCCTTGAGAATAAA
GCGACAGGCGCTCTTGGACAAGCCTCGGGAAATCACGGTAGATGACGCGC
TGATCGCTCCGACTTCGGTGGCTCGGCAGCATACCCACAAGACAGCAGAA
GAATACGACGGCGACGGTGGCGGCCACGGCGAGCATTCCACGAAGACAAC
GAAGGCTGCCTTACCAACCGCCGACATCGCCGAGGTTTCTGATCGCGGCG
GGCGCGTGAGCGATGCCCGCGGCGGGCCAGTCTGGAAGACCCGTAAGGAA
TTCGACAAAGCTGCCGCTGCTGCTGCTTTCTCAGGGAAAAGGGGTGGCGG
TCGTGGCGGCGGGCGCGGCAGTGGTGGCAAGCGAGGCGAGAAGAAAAGAG
GCGGCGGCGGTGGAAGAGGTGCGGGCGAGGAGCAAGGGAAAAAGGAGCGT
GGGAACCGTCGTGGCGGTGGCGGTGGTGGTGGTGGTGGTGGCGGCGGGGG
GGGTGGGGGTGGGGGAGGGGGAGGGAGAGGTGGTGGTGAAGGGCAGGGTG
GAGGGAACAAGAGGAAGTGGGGAGGGCGTGGAGACCGGGCACCGGGTCAG
CGCAGATAA
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