mRNA_Ecto-sp8_S_contig10506.795.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10506.795.1
Unique NamemRNA_Ecto-sp8_S_contig10506.795.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10506.795.1 vs. uniprot
Match: D8LL23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL23_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.520e-64
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 1 
Query:  145 TRLPGGSSTTARRVRPSGLVRLRSSSDESNSEGEPWGWSADQSGREGDDGGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYTQPVE 462
            +RLPGGSSTTARRVRPSGLVRLRSSSDESN EGEPWGWSADQSGREGDDGGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYTQPVE
Sbjct:    4 SRLPGGSSTTARRVRPSGLVRLRSSSDESNFEGEPWGWSADQSGREGDDGGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYTQPVE 109
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BLAST of mRNA_Ecto-sp8_S_contig10506.795.1 vs. uniprot
Match: A0A6H5KPD2_9PHAE (zinc_ribbon_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD2_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.390e-53
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:  145 TRLPGGSSTTARRVRPSGLVRLRSSSDESNSEGEPWGWSADQSGREGDDGGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYTQPVE 462
            +RLPGG+S  A RVR SG VRLRSSSDESNSEGEPWGWSADQSGREGDD GGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYTQPVE
Sbjct:    4 SRLPGGTSKAACRVRSSGHVRLRSSSDESNSEGEPWGWSADQSGREGDDRGGAGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYTQPVE 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10506.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL23_ECTSI1.520e-6498.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPD2_9PHAE2.390e-5392.45zinc_ribbon_2 domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10506contigEcto-sp8_S_contig10506:3..2112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size462
Hectar predicted targeting categorychloroplast
Exons4
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-27_000840.1
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143149.1494088-CDS-Ecto-sp8_S_contig10506:2..491681143149.1494088-CDS-Ecto-sp8_S_contig10506:2..49Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10506 3..49 -
1681143149.161156-CDS-Ecto-sp8_S_contig10506:331..4111681143149.161156-CDS-Ecto-sp8_S_contig10506:331..411Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10506 332..411 -
1681143149.1749997-CDS-Ecto-sp8_S_contig10506:951..11371681143149.1749997-CDS-Ecto-sp8_S_contig10506:951..1137Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10506 952..1137 -
1681143149.188131-CDS-Ecto-sp8_S_contig10506:1963..21121681143149.188131-CDS-Ecto-sp8_S_contig10506:1963..2112Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10506 1964..2112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10506.795.1prot_Ecto-sp8_S_contig10506.795.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10506 3..2112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10506.795.1

>prot_Ecto-sp8_S_contig10506.795.1 ID=prot_Ecto-sp8_S_contig10506.795.1|Name=mRNA_Ecto-sp8_S_contig10506.795.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=154bp
MQNLRRPLIAYCVLHLAPSSAFLPGCRSVGRFAAQRCAGHWCGATSGTTR
LPGGSSTTARRVRPSGLVRLRSSSDESNSEGEPWGWSADQSGREGDDGGG
AGGPWDDSSQDKWEALYAEGEKEKQSSTFLSAMADWGKGGVLGAVDVEYT
QPVE
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mRNA from alignment at Ecto-sp8_S_contig10506:3..2112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10506.795.1 ID=mRNA_Ecto-sp8_S_contig10506.795.1|Name=mRNA_Ecto-sp8_S_contig10506.795.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2110bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10506:3..2112- (Ectocarpus species8 EcLAC_412)
ATGCAGAATCTCCGCCGTCCTCTCATCGCCTACTGTGTGCTCCACCTGGC
ACCCTCGAGTGCTTTCTTGCCTGGGTGCCGGTCGGTGGGACGATTTGCTG
CACAGCGGTGCGCCGGTCATTGGTGCGGTGCAACAAGCGGCACGACTCGG
TGAGCGCGACCGACACACCTCCATATGACGCTGCTGCTGCCTCCTATGTA
CTTGAGGAGTATAGTTTTTGGTGGTAGTCACGGGCGTATTTATGGTGGTA
GAGCGTGTTTTTTCCACAGCCTATTGACCACATTACACGAGCCTGATTTA
CTACTGCATTTGTCGCTGACCGGCAACATGACCAGCTTGCCGTGGGTTGA
CCTGCGCCTCCACACTGAGGACAAATCGTTTGTCCACGCGCCAGTTCCGC
CGGACTTCCACTGCCGAGCTGATGGTAGATAGTTTCTTTTGGCTGGTGCT
GGTCTAGATCTAGGAGGATCTAGGAGCACTTGTGTTCGGTGTCGATTTTC
GCTGCCGTTCTACATGTAACTTTCCTGGGAAGGGTCCGCTGAGAATTCCA
GCATACCGCAGGACATTCTGGTGCTGCCCCCCGCCGTCTGCCACATGCCC
AACCCTCGGGTGCCCTCTCTACCGGCAAGCATGGCATGTGATGAGCATGG
CACGTGGGATCGCTCGCCACAGAAACGTGGTGCGCGTATGTTACTTCACT
GCACCCTCCACTTCAACTATGACGAGCTGCATATGCAAACGTACATCTAC
TACTGTAACGATGAGAGAAACAACACGGACGACGCCCGGGTCAGTTGGAC
CGACCAGTACGCATAGAAGAAGGTAATGAGTACTGAGTAGACAGGGGGAC
CGGTTTTTACCTGAAGCCAACCGCAACAACAACAACAATCCAAAAATCTT
GAGTCCTTTGTATCGGCGTGTTGGTATGTCGACACCCCTCTTTTCCGTCG
CCTGCGGGACGATGATCAAATCAAGGCTACCCGGCGGGAGCAGCACAACA
GCTCGCCGCGTTCGTCCGAGCGGACTTGTGAGGCTTCGAAGCTCTTCTGA
CGAGAGCAACTCCGAGGGAGAGCCCTGGGGCTGGAGCGCAGATCAGTCGG
GGAGAGAAGGAGACGACGGTGGTGGGGCTGGCGGTCCCTGGGACGATTCT
TCTCAAGACAAGTAATTTTAGTCGAGTTTACCCCTGAGGCGGGAAAGGGG
GAAGTACATGTACAAATAGCTGCAAAAGTTGTTTCTTAATCGTTTTTTGT
GTGGCAAACACTTGCGTCGGTTCTGCAGCTGAAGGTAAAAGCGGCGAACA
GCAGAGGAGCCAGCCGGTGACTTCGGACGGGACTCGAAAAGGGTTTTAGA
CCGTGTCCCGAACTCGTTGTACGGTACGCAGAAGCGCACCTTCAATATGA
AGAATTGAGTTAAGAACTTTTGAACGGGTTCCCTTGCCCAACCTTTCAAG
CGTCTGTGGAGGCCGACGATGGCAAGATGCCTCTTTCGGTCTTGCCCAGA
GGTTTACGCTATCAAACCGGTGCACAAAGAGCCGCCCGTAAACCATAACG
GTTCAGTGGTGGTATCCCCAGCAGGGTTTAAAAGTATTGGATACGTACAC
AGATGAGCGAGTACGGACTCGGACAGGTCGTTGTCGGTGAACACGGTGTG
TAAATCAGTAGCACGCGTCTTTCGCTGTTGCGCCTGTGCTTCTTCGCGCA
GGTGGGAGGCTCTCTACGCCGAGGGGGAGAAGGAGAAGCAGAGTTCCACC
TTCCTCAGCGCAATGGCGGACTGGGGCAAAGGTATTGGAGGTTGCGATGC
GCTTGTGCTACCTACCTTGTGACGCGAGCGAATGTATTGTCTGCTTCTTT
TTGGGGAAGGGGAGGCGGTGTAGCTGTTGCATGGTACAGCAGTTATCGCG
GCAATTTTTTCGATTGCGTGTCCGGGGGTGCCGTGGGGGTTTTGATACGC
CGCCCGGCATCCGGGGGGGCGCGTCCCTGCAGCTCTGGTCTCTTGGTAGG
GGCCGTGCCTCCGAATCGAACAGGTGTCGTTCCTTCGTCCCCCACGTGTA
CACACGTGGACAGGCGGAGTGCTGGGCGCGGTGGACGTGGAGTACACCCA
GCCCGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10506:3..2112-

>mRNA_Ecto-sp8_S_contig10506.795.1 ID=mRNA_Ecto-sp8_S_contig10506.795.1|Name=mRNA_Ecto-sp8_S_contig10506.795.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10506:3..2112- (Ectocarpus species8 EcLAC_412)
ATGCAGAATCTCCGCCGTCCTCTCATCGCCTACTGTGTGCTCCACCTGGC
ACCCTCGAGTGCTTTCTTGCCTGGGTGCCGGTCGGTGGGACGATTTGCTG
CACAGCGGTGCGCCGGTCATTGGTGCGGTGCAACAAGCGGCACGACTCGG
CTACCCGGCGGGAGCAGCACAACAGCTCGCCGCGTTCGTCCGAGCGGACT
TGTGAGGCTTCGAAGCTCTTCTGACGAGAGCAACTCCGAGGGAGAGCCCT
GGGGCTGGAGCGCAGATCAGTCGGGGAGAGAAGGAGACGACGGTGGTGGG
GCTGGCGGTCCCTGGGACGATTCTTCTCAAGACAAGTGGGAGGCTCTCTA
CGCCGAGGGGGAGAAGGAGAAGCAGAGTTCCACCTTCCTCAGCGCAATGG
CGGACTGGGGCAAAGGCGGAGTGCTGGGCGCGGTGGACGTGGAGTACACC
CAGCCCGTGGAG
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