mRNA_Ecto-sp8_S_contig105002.789.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig105002.789.1
Unique NamemRNA_Ecto-sp8_S_contig105002.789.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A0U2VCR3_9MAXI (60S ribosomal protein L27 n=2 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2VCR3_9MAXI)

HSP 1 Score: 240 bits (613), Expect = 6.770e-80
Identity = 120/136 (88.24%), Postives = 129/136 (94.85%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMKAGKVVLLL GRYAGRKAV+VKPSDEGT+DKPFSHALVAGIDRYPRKVTKKMSKK+I KRSK+KPFLKVVNYNHV+PTRYSVDI FDK NINKE +KDP KKKKARNMVR KFEE+YK+GKNRWFFQKL+F
Sbjct:    1 MGKIMKAGKVVLLLSGRYAGRKAVVVKPSDEGTTDKPFSHALVAGIDRYPRKVTKKMSKKRITKRSKIKPFLKVVNYNHVLPTRYSVDIPFDKANINKETLKDPSKKKKARNMVRLKFEEKYKTGKNRWFFQKLRF 136
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: UPI000C7884DA (60S ribosomal protein L27-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7884DA)

HSP 1 Score: 239 bits (610), Expect = 1.940e-79
Identity = 117/136 (86.03%), Postives = 131/136 (96.32%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMK GKVVLLL GRYAGRKAV+V+PSD+GTSDKPFSHALVAGIDRYPRKVTKKM+KKKIQ+RS +KPFLKVVNYNH+MPTRYSV+I+FDK N+NKE +KDPMKKKKARNMVRTKFEE+YK+GKNRWFFQKL+F
Sbjct:    1 MGKIMKTGKVVLLLSGRYAGRKAVVVRPSDDGTSDKPFSHALVAGIDRYPRKVTKKMNKKKIQRRSVIKPFLKVVNYNHLMPTRYSVEITFDKANLNKETLKDPMKKKKARNMVRTKFEEKYKTGKNRWFFQKLRF 136
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A553P9W1_TIGCA (60S ribosomal protein L27 n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9W1_TIGCA)

HSP 1 Score: 233 bits (595), Expect = 3.760e-77
Identity = 115/136 (84.56%), Postives = 129/136 (94.85%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMK+GKVVL+L GR+AGRKAVIVKP+DEGT+DKPF HALVAGIDRYPR VTK+MSKKKI+ RSKVKPFLKVVNYNH+MPTRYSV++ FDK N+NKE +KDPMKKKKARNMVRT+FEERYKSGKNRWFFQKL+F
Sbjct:    1 MGKIMKSGKVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALVAGIDRYPRMVTKRMSKKKIKMRSKVKPFLKVVNYNHLMPTRYSVELGFDKANLNKETLKDPMKKKKARNMVRTQFEERYKSGKNRWFFQKLRF 136
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A0U2M966_ACAPC (60S ribosomal protein L27 n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2M966_ACAPC)

HSP 1 Score: 231 bits (590), Expect = 2.170e-76
Identity = 112/136 (82.35%), Postives = 130/136 (95.59%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKI+KAGKVVLLL GRYAGRKAV+VKP++EG+SDKPF HALVAGI+RYPRKVTK+M+KKK+QKRSK+KPFLKVVNYNHVMPTRYSVDI FDK+N+NKE++KDP KKK ARNMVR KFEE+YK+GKN+WFFQKL+F
Sbjct:    1 MGKIIKAGKVVLLLSGRYAGRKAVVVKPNEEGSSDKPFPHALVAGIERYPRKVTKRMNKKKVQKRSKIKPFLKVVNYNHVMPTRYSVDIPFDKSNLNKEVLKDPKKKKTARNMVRVKFEEKYKAGKNKWFFQKLRF 136
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A481SXL2_XIBTU (60S ribosomal protein L27 n=1 Tax=Xibalbanus tulumensis TaxID=1519145 RepID=A0A481SXL2_XIBTU)

HSP 1 Score: 218 bits (554), Expect = 6.680e-71
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMK+GKVVL+LGGRYAGRKAVI++  DEG+SDK + HALVAGIDRYP KVTKKM+ +KI  +SK+KPFLKV+NYNH+MPTRYSVDISFDK  INK+++KDPMKKKKARN V+ KFEERYKSGKNRWFFQKL+F
Sbjct:    1 MGKIMKSGKVVLVLGGRYAGRKAVIIRNYDEGSSDKRYGHALVAGIDRYPHKVTKKMNNRKIALKSKIKPFLKVLNYNHLMPTRYSVDISFDKNGINKDVLKDPMKKKKARNAVKAKFEERYKSGKNRWFFQKLRF 136
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A0P5Z152_9CRUS (60S ribosomal protein L27 n=5 Tax=Daphnia TaxID=6668 RepID=A0A0P5Z152_9CRUS)

HSP 1 Score: 216 bits (550), Expect = 4.610e-70
Identity = 105/136 (77.21%), Postives = 124/136 (91.18%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMK+GKVVL+LGGR+AGRKA+IVK  DEGTS+KP+ HALVAG+DRYPRKVT KMSKKK+ KRSK+K F+K+VNYNH+MPTRYSVD+SFDK  +NK+ +KDP+K+KKAR  VRTKFEERYKSGKNRWFF KL+F
Sbjct:   17 MGKIMKSGKVVLVLGGRFAGRKAIIVKNYDEGTSEKPYGHALVAGVDRYPRKVTNKMSKKKVAKRSKIKAFVKIVNYNHMMPTRYSVDLSFDKNLVNKDSIKDPLKRKKARFAVRTKFEERYKSGKNRWFFSKLRF 152
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A0U2UU50_9MAXI (60S ribosomal protein L27 n=1 Tax=Tortanus dextrilobatus TaxID=207953 RepID=A0A0U2UU50_9MAXI)

HSP 1 Score: 215 bits (548), Expect = 5.480e-70
Identity = 107/136 (78.68%), Postives = 119/136 (87.50%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKI+K GKVVLLL GRYAGRKA +V P+DEG SDKPF HALV GIDRYPRKVTKKMSKKKI KRS +KPFLKVVNYNHVMPTRYSV++ FDKT +NKE +KDP KK+KARNMV+  FE  YKSGKN+WFFQKL+F
Sbjct:    1 MGKIIKEGKVVLLLSGRYAGRKACVVTPNDEGKSDKPFCHALVVGIDRYPRKVTKKMSKKKIAKRSSIKPFLKVVNYNHVMPTRYSVELRFDKTKLNKETLKDPNKKRKARNMVKQTFETSYKSGKNKWFFQKLRF 136
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: A0A4Y2HUC9_ARAVE (60S ribosomal protein L27 n=8 Tax=Arachnida TaxID=6854 RepID=A0A4Y2HUC9_ARAVE)

HSP 1 Score: 213 bits (543), Expect = 5.030e-69
Identity = 102/136 (75.00%), Postives = 125/136 (91.91%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMK GKVVL+L GRYAGRKAV+VK +DEGTSDKP+ HALVAGIDRYPRKVT++M KKK++KRSK+KPF+KV+NYNH+MPTRY VDI+FDK+ +NKE++KDP K++KAR  V+ KFEERYK+GK+RWFFQKL+F
Sbjct:   15 MGKIMKIGKVVLVLNGRYAGRKAVVVKNNDEGTSDKPYGHALVAGIDRYPRKVTRRMGKKKLEKRSKIKPFVKVLNYNHLMPTRYMVDIAFDKSIVNKEVLKDPSKRRKARRDVKAKFEERYKTGKSRWFFQKLRF 150
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BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: C1BV54_LEPSM (60S ribosomal protein L27 n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BV54_LEPSM)

HSP 1 Score: 212 bits (540), Expect = 9.080e-69
Identity = 98/136 (72.06%), Postives = 126/136 (92.65%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIM++G++V++L GR+AGRKAVIV+P+DEG  +KPF HALVAG+DRYPRKVTK+MSKKK+++RSK+KPFLKV+NYNH+MPTRY+VDI FDK +INKE++KDPMKKKKAR +VR  FEE+YKSG ++WFFQ+L+F
Sbjct:    1 MGKIMRSGRIVVVLSGRFAGRKAVIVRPTDEGNGEKPFGHALVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYKSGNSKWFFQRLRF 136
[Close]
BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Match: C1BQQ7_CALRO (60S ribosomal protein L27 n=2 Tax=Caligus TaxID=217164 RepID=C1BQQ7_CALRO)

HSP 1 Score: 210 bits (535), Expect = 5.250e-68
Identity = 99/136 (72.79%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:    1 MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF 408
            MGKIMK+GKVV++L GRYAGRKAVIV+P+DEG  +KPF HAL+AG+DRYPRKVTK+MSKKK+++RSK+KPFLKV+NYNH+MP RY+VD  FDK  INKE++KDPMKKKKAR +VR  FE +YK+G N+WFFQKL+F
Sbjct:    1 MGKIMKSGKVVVVLSGRYAGRKAVIVRPTDEGNGEKPFGHALIAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHMMPARYTVDTKFDKEAINKEVLKDPMKKKKARQIVRNDFESKYKAGDNKWFFQKLRF 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig105002.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U2VCR3_9MAXI6.770e-8088.2460S ribosomal protein L27 n=2 Tax=Pseudodiaptomus ... [more]
UPI000C7884DA1.940e-7986.0360S ribosomal protein L27-like n=1 Tax=Eurytemora ... [more]
A0A553P9W1_TIGCA3.760e-7784.5660S ribosomal protein L27 n=1 Tax=Tigriopus califo... [more]
A0A0U2M966_ACAPC2.170e-7682.3560S ribosomal protein L27 n=2 Tax=Acartia pacifica... [more]
A0A481SXL2_XIBTU6.680e-7178.6860S ribosomal protein L27 n=1 Tax=Xibalbanus tulum... [more]
A0A0P5Z152_9CRUS4.610e-7077.2160S ribosomal protein L27 n=5 Tax=Daphnia TaxID=66... [more]
A0A0U2UU50_9MAXI5.480e-7078.6860S ribosomal protein L27 n=1 Tax=Tortanus dextril... [more]
A0A4Y2HUC9_ARAVE5.030e-6975.0060S ribosomal protein L27 n=8 Tax=Arachnida TaxID=... [more]
C1BV54_LEPSM9.080e-6972.0660S ribosomal protein L27 n=2 Tax=Lepeophtheirus s... [more]
C1BQQ7_CALRO5.250e-6872.7960S ribosomal protein L27 n=2 Tax=Caligus TaxID=21... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig105002contigEcto-sp8_S_contig105002:59..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start1
Seed ortholog score217.2
Seed ortholog evalue4.6e-54
Seed eggNOG ortholog6669.EFX78542
Preferred nameRpL27
Model size411
KEGG koko:K02901
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eL27 family
EggNOG OGs3A1HM@33154,3BPIU@33208,3D67U@33213,41ZBB@6656,COG2163@1,KOG3418@2759
Cds size411
COG Functional cat.J
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.620015-CDS-Ecto-sp8_S_contig105002:58..4691681143148.620015-CDS-Ecto-sp8_S_contig105002:58..469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig105002 59..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig105002.789.1prot_Ecto-sp8_S_contig105002.789.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig105002 59..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig105002.789.1

>prot_Ecto-sp8_S_contig105002.789.1 ID=prot_Ecto-sp8_S_contig105002.789.1|Name=mRNA_Ecto-sp8_S_contig105002.789.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=137bp
MGKIMKAGKVVLLLGGRYAGRKAVIVKPSDEGTSDKPFSHALVAGIDRYP
RKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINKEL
MKDPMKKKKARNMVRTKFEERYKSGKNRWFFQKLKF*
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mRNA from alignment at Ecto-sp8_S_contig105002:59..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig105002.789.1 ID=mRNA_Ecto-sp8_S_contig105002.789.1|Name=mRNA_Ecto-sp8_S_contig105002.789.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105002:59..469- (Ectocarpus species8 EcLAC_412)
ATGGGTAAAATCATGAAGGCAGGGAAGGTGGTGCTCCTGCTCGGCGGGAG
GTACGCCGGCAGGAAGGCCGTGATCGTGAAGCCCTCAGACGAGGGAACCA
GCGACAAGCCCTTCAGCCACGCTCTGGTTGCCGGCATTGACAGGTATCCC
CGCAAGGTCACCAAGAAGATGTCCAAGAAGAAGATCCAGAAGAGGTCTAA
GGTCAAGCCATTCCTTAAGGTCGTCAACTATAACCACGTGATGCCCACCC
GTTACTCTGTTGATATCAGCTTCGACAAAACTAACATCAACAAGGAGCTC
ATGAAGGATCCCATGAAGAAAAAGAAGGCTCGCAACATGGTCCGCACCAA
GTTCGAGGAGAGATACAAGTCCGGCAAGAACAGATGGTTCTTCCAGAAGC
TGAAGTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig105002:59..469-

>mRNA_Ecto-sp8_S_contig105002.789.1 ID=mRNA_Ecto-sp8_S_contig105002.789.1|Name=mRNA_Ecto-sp8_S_contig105002.789.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig105002:59..469- (Ectocarpus species8 EcLAC_412)
ATGGGTAAAATCATGAAGGCAGGGAAGGTGGTGCTCCTGCTCGGCGGGAG
GTACGCCGGCAGGAAGGCCGTGATCGTGAAGCCCTCAGACGAGGGAACCA
GCGACAAGCCCTTCAGCCACGCTCTGGTTGCCGGCATTGACAGGTATCCC
CGCAAGGTCACCAAGAAGATGTCCAAGAAGAAGATCCAGAAGAGGTCTAA
GGTCAAGCCATTCCTTAAGGTCGTCAACTATAACCACGTGATGCCCACCC
GTTACTCTGTTGATATCAGCTTCGACAAAACTAACATCAACAAGGAGCTC
ATGAAGGATCCCATGAAGAAAAAGAAGGCTCGCAACATGGTCCGCACCAA
GTTCGAGGAGAGATACAAGTCCGGCAAGAACAGATGGTTCTTCCAGAAGC
TGAAGTTTTAA
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