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Homology
BLAST of mRNA_Ecto-sp8_S_contig1041.668.1 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI) HSP 1 Score: 654 bits (1688), Expect = 7.040e-232 Identity = 343/361 (95.01%), Postives = 349/361 (96.68%), Query Frame = 1
Query: 238 MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCAARGVRPTSATTSHAGASPSGSSAPKTGADGSXAGSATSSSPSVVVTQAVEGSKHPVGGFANGALIPLAAEGGNSSGAEGAT-VRVDKWGEASEGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGGEGGSGREGGELMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 1317
MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCA RGVRPTSATTSHAGASPSGSS PKTGA+G AGSATSSSPS VVTQAVEGS+HP GGFANGALIPL+ EGG+SSGAEGAT VRV KWGEA+EGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGG EGGS RE GE+MAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI
Sbjct: 1 MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCAVRGVRPTSATTSHAGASPSGSSTPKTGANGPGAGSATSSSPSAVVTQAVEGSEHPAGGFANGALIPLSTEGGSSSGAEGATAVRVGKWGEAAEGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGAEGGSRRERGEVMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 361
BLAST of mRNA_Ecto-sp8_S_contig1041.668.1 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.620e-56 Identity = 106/218 (48.62%), Postives = 137/218 (62.84%), Query Frame = 1
Query: 724 AEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGGEGGSGREGGELM--------------AGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETD------LVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 1317
A+ WTEFEDWLLQDT++RYAIGSGKHVLW RMV EVPEL+ RTPQEAR RWL +TGRL+ R+GG +G+P ++ FY+QPP+L WEE+ +G SF G+V G GLADG + T +D++GR++ DQYV T+CG V+ELG RR D ++ +S AP LA A A T L+HH+Q+EVFV+
Sbjct: 22 ADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLT-------DQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDG----SFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1884 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-22_002440.1 |
| Cds size | 1155 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143140.518687-UTR-Ecto-sp8_S_contig1041:4394..4559 | 1681143140.518687-UTR-Ecto-sp8_S_contig1041:4394..4559 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig1041 4395..4559 + |
| 1681143140.572824-UTR-Ecto-sp8_S_contig1041:8791..9355 | 1681143140.572824-UTR-Ecto-sp8_S_contig1041:8791..9355 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig1041 8792..9355 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143140.5285332-CDS-Ecto-sp8_S_contig1041:4559..5173 | 1681143140.5285332-CDS-Ecto-sp8_S_contig1041:4559..5173 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1041 4560..5173 + |
| 1681143140.5375223-CDS-Ecto-sp8_S_contig1041:5929..6137 | 1681143140.5375223-CDS-Ecto-sp8_S_contig1041:5929..6137 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1041 5930..6137 + |
| 1681143140.546304-CDS-Ecto-sp8_S_contig1041:6341..6491 | 1681143140.546304-CDS-Ecto-sp8_S_contig1041:6341..6491 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1041 6342..6491 + |
| 1681143140.5551221-CDS-Ecto-sp8_S_contig1041:8044..8113 | 1681143140.5551221-CDS-Ecto-sp8_S_contig1041:8044..8113 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1041 8045..8113 + |
| 1681143140.563987-CDS-Ecto-sp8_S_contig1041:8677..8791 | 1681143140.563987-CDS-Ecto-sp8_S_contig1041:8677..8791 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig1041 8678..8791 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1041.668.1 >prot_Ecto-sp8_S_contig1041.668.1 ID=prot_Ecto-sp8_S_contig1041.668.1|Name=mRNA_Ecto-sp8_S_contig1041.668.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=385bp
MVMFKNRSTAVAAALLLAHHRHGNMPPLAAGFVAPTPIAAQPQRRLPPWC EPVSFPPAWDSSRPVPASSKPPASNCNYRSCAARGVRPTSATTSHAGASP SGSSAPKTGADGSGAGSATSSSPSVVVTQAVEGSKHPVGGFANGALIPLA AEGGNSSGAEGATVRVDKWGEASEGNLAGEFEWEGGAEAAWTEFEDWLLQ DTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGG EGGSGREGGELMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQ RGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASS KMLKIAPATVLALAGAFYALTALSHHIQVEVFVI* back to topmRNA from alignment at Ecto-sp8_S_contig1041:4395..9355+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig1041.668.1 ID=mRNA_Ecto-sp8_S_contig1041.668.1|Name=mRNA_Ecto-sp8_S_contig1041.668.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4961bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1041:4395..9355+ (Ectocarpus species8 EcLAC_412) CCCTGCCCTGCTCAGCTTGGCTTTCTTCTCACGCACAGGCGTTTGCTGTG
TTCCGTTCACAGAGCATACCTCTGCCTTGCAGAAGGTGAAGTCTGGCAAA
GCATTGACAAACGTGTGCAGTGTCGCCAGCCCGGGGTGTGTGCAGCAGTT
GCGCACGATACGAGCATGGTAATGTTCAAAAACCGAAGTACCGCTGTTGC
GGCGGCGCTCCTGCTTGCCCACCATCGACACGGAAACATGCCGCCTCTTG
CGGCAGGCTTCGTTGCACCCACCCCGATCGCCGCTCAGCCGCAGCGGCGG
CTTCCACCCTGGTGTGAACCCGTATCGTTTCCGCCTGCTTGGGACTCGTC
AAGGCCAGTGCCGGCAAGTAGCAAACCGCCGGCTTCCAACTGCAACTACC
GCTCCTGCGCCGCGCGAGGTGTTCGACCAACGAGCGCAACGACTTCCCAC
GCTGGTGCTTCTCCTTCCGGCAGCAGCGCGCCGAAGACCGGTGCCGACGG
TTCGGGTGCAGGGTCGGCTACTTCTTCATCACCTAGTGTGGTTGTCACGC
AGGCAGTGGAAGGGAGCAAGCACCCAGTAGGCGGGTTCGCAAACGGCGCT
TTGATCCCATTGGCAGCGGAGGGAGGCAACAGCAGCGGGGCAGAAGGAGC
AACGGTACGAGTAGATAAGTGGGGGGAGGCGTCGGAAGGGAACTTGGCGG
GAGAGTTCGAGTGGGAGGGCGGGGCAGAGGCTGCATGGACCGAGTTCGAG
GACTGGCTCCTTCAAGACACGTACTCCAGGTATGAACATTGATCCAGATG
GTGTTGGTGAGCAGCGGTAGGTGGGCTTGATACATGTGGTAGAAAGACGA
ACAGGCGGCTGCTTATCATACATGCCCTGGTATGCTACCCGCGGTACACT
CCACCCTGCTTTAGATCAAGCTTTTGCTCTTTGAGGTTGGACGATGTTGG
TACATACGGTACGATGGTGGTGACAATATTGAGCTACGGTTCAAGTATAT
GTAGTGATAATCCAGCCCAAGCATCTTCATGCTGCGCCGCGTCTTCCCGA
CAGCAAGCAGCCCGGGCTATTAGGACACACCATAATCCGCGCGTTGCTCG
TTTGTTCACCAGTGCTTCGAGGCTGTCGTGGTTGATAGGCTTTGGCGTTG
ATTGTAGGAACGGTGGCGTGAGAAAGAGATGCATCGTCAATCATCAGGTG
ACGGAAACAAATGAGTTCGCCTGCATGACGCTGTGAGCGATACACGAAGC
ATCGCTCGTTTGTGGAGAACCCCGGGACACGGAGTAGGCGTTGATTGGTG
AACGATTCCCCCGTTGCCCATCTCCATGCAGCAATTCTGCCCCCACTGCC
ACTGGCCTTGTGATTTCAATGCATAGGGTACCTTTGTTGAGCCAATACTG
CACAAGAAAAACTAGTCATCTCCGCGAAGGCATGCCCGCCCCGAGCGAAG
CCAAGATGCACAAATAAACGTGGAACGTTCCACTTTTCCCGAACCCATAC
CGCCGTATCCTTTTGTGTTAACCGGCCATGAACAGATACGCAATCGGTTC
AGGGAAACACGTTTTGTGGCGGCGCATGGTGCGAGAGGTGCCCGAGCTCA
TGGAGCGAACTCCTCAGGAGGCGCGGGAGAGATGGCTGAGACTCACGGGG
AGGCTCAGCGCGGGCGGCGGAGAGGGAGGGAGCGGGAGAGAAGGGGGGGA
GCTTATGGCAGGCTCACCGGCATTAGACAACTTTTACATTCAGGTAGGTC
TCGATGGGTCACAAGCTGTGGTTCACTCCGTGGTGTTGATTACCGGCCAA
GGCATCACCTTGTTGTGTGTTCAGCTCTCCCGTTGGTAGCCAAGTCAATT
TGTCCCGTTGTGCCGCAAAGTTGTACGCAAAGGTTCCAACTCTTCGACCC
TCCCCATCCCCCCGCTCTCAAAACGCCTGTTGGCCGACATAACCCAGCCT
CCCGTGCTGGAGCAATGGGAGGAAATCGTCGAGGGCGAGGGAATGGGTTC
TTTCCGCGGAAACGTGTTTGGGCAGCGAGGCTTGGCCGACGGGACGGCGA
TGACCACAGCGCCGATCGACATTTCGGGCAGGAAAATACAAGACCAGGTA
TAATCCAAAGCTTGCGGGGCACTTATCCCGATAGAGAGGAATTCTTACAA
CGCGTCGTTTTCGATGTATGGTCATACTGAAAGATCGGGACCTTTCTAAA
CCTTGTAAGACGGGATGTTGAATACGGTGTTTGCGAACATCTGATTCTGG
TCTTGTCTTGGTCTTTTTTGTCCCCCCGAGCGCCGAAGTCCGATGGATCT
TTAGGAATATGGTCTTTTGCTTTCGCGAATTGCCCCCAAAGACCCGAGAA
AAGCTCCGATTTTGTCTTGCTCAGTTTTGTCTTCGAAAGAACAATTTTTC
ATTGGCCTACACACCCCGAGATACTCCCGACGACGTCCTCCCGACACGCG
CCGCACCATCCCGTGGAGCTGCGCAAACACACACAACTCGGCCGTCATAG
GCGACACCATGGCGAACAAACTACAGCAGTACCGCCAGACAGACAGTCAG
ACAGACGTCACTGCACCGCAGACCCGGTGCGCATTGCATGCTGCCGACAT
GGTGCAACTTTTGCGTCATCTTAGATGTATATGTGTGAACCGAAGCAACC
GCTCTTCTACATGCATGCTCATGAGCGACACATCAAGCCGGCGTGAGGAG
GGTGAGGCGGTGAGGCGGGCGGCATAGATCTCAGGAGTGCGGCACAGGTG
GAGGCGGAGGTGATGGAGTAAGGGATGCTTCAAGCGGCGTGGGAGCGTGA
GGAGCTGCTGCAGCGCGTGCGTCCTGTGGACCGTGCTGCGGTGATTCGTT
TGACGGGGAACGATCGACTCCGTCGACGACTGACTGCGATGTGTATCACA
ACTTGTTCGCGTGCTGAAGGGGCACACACATGGATGCCTCCGCTATTTAC
GGCGCTACGCTTCCCATGAACTCCTGGCAACTGAACTGGGCCAGCCGCCT
GTTCATGAGTACGTTGCTCCACCAGTATTCTCGCCATGACTTACTTAGTT
AGCTGGGGGTGTGGGTGCAGTTATAGTAGAGTAGTAGTAGCCTTGTTGGG
GTGGAGGCGGAAGCTCGGAAATAAATATGTTGTTGTGTTCCGAGTCGGCT
CAACCATCTGTCTGCCGCCGCCGGCAAAGGGGCTCCGTCGTATTGAACGC
AACGTTCTTGGAATTTTCCGCGTGCTCAAGACCGAAAGAATCACACTCCA
GTCTTCGCAAGCAGTTTTGAAACACGATTCCGGTCTTGGTTTTGGACTTG
CTTCCGACTTCCAAGACCAAGACCTGAGACCAGTCCGCAAACACCCTAAT
GTCAGGACGATAGCCTCCCTGCCCTTTTCTGTCGTCGTGAAAGTTCAGGC
ATCTAGGCAACAGTTTAGTTTGCCGCTGCCTTTTGTTTTACAGAAGTCTG
CGGTGGCTTACCCGCAAGATAAGTCAACCACATGTTTCCTTTTGTGTCAC
AAGTGTCCAGTACGACTTTTTGCAGGTTGAGCAAGATGACGCAGCAACGA
TGCACGTGGGTTTTGCATTCCCATACACAATGACCTGCTGACTGTCTTCC
GTCTTGATTTCTTATCCTTTCCTCCCCCCGTGCTGTGTTGCTCTTCGCAG
TACGTGGCCACGCAGTGCGGCGTGGTGTACGAGCTGGGAGAGAGACGAGA
GACAGACTTGGTCAGCCAGGTAGGCCGAAATAGGACCTGGTCTTCTTTGC
GCAGACGTTGTGTCCAGTTCATGGTTTTTTTCCAGTCTCTAGTCACTCGC
ATTAAATGTTCCACTATTTCGGTTTCGTGCGCTTGCGTCCTCTTGTTATA
CGAGACTGTTCCCTTTGCCACCAGGACAAACACCGAGACAACAGTCAGTC
CAGTATTAGATAGAGCGTGTGACTTATTTGTTGTCGGGGAGGTGGTGCTA
TGTTTCCCCCGTTGGTGACGGTAGTCTTAATGTGCGTGCAGCATTCCATA
TGCAGCACATCATCGACAGTTTACCCTGCAGCGTGTCGACCAACTACGTC
GACACCCCGAAGTAGAGAAGAGCAGGGATTCTTACCTGCTATTCTGGGGC
CTTACGCTGGATTCCCAACGGCAAGGAAGAAGATGCCTTCACCCCCATGT
TCTGGCGCTTGTCTCTTTTCCGAATGACAGACGACGCGACGTCACAAACA
AATGAAAAACAAAAATGTGTTCGTCCGACGGGTGGTGCATGCATCTTAAC
CTGTGCCCTTGATTGAAAACCTGTGTGATCCAGGCGTCTTCAAAGATGCT
CAAGATTGCCCCGGCCACTGTGCTGGCGCTCGCTGGAGCATTCTACGCCT
TGACAGCCCTGTCGCACCACATTCAAGTCGAGGTCTTCGTCATTTGATCG
AAGGCCAGTCGTCAAACATTATATATAAAAGCCTCCGATTGCAATAGTAG
AAAGTGGTAAATGTTTTGGCTTGGGGCGACGTTTGAGTGCGATGTGAGCT
GCGCACGTCTGTCACAGTGTGCTAGCACAACACAAGTCCTGCGTTGGGTG
CAAGCCTCTTAGGAGTTGATGCTTGCGGGAACCAAGGTGTACCTGGAGTG
CACGGGTTGATTCTAGCGTTCTTGTTTTGTGTTACTAGGTTACTAAGTGG
GTGTGGCAAGTAGATTATAGCTCCGTTTGGTATGCTCAGGGGTGGTTTTG
TGTCGGGAGCGAGAGTGGGGAGTGGAGAGGGGCAGGCGGGCGAATTACTA
GTTCCTCCCACGTTTGCGTAGTTAAAACCCAAGGCATTGGTTCAGGCGGT
CATGGAACTGCGGAACAGCCCGGGTCTGTTTCTCCCGAGAAGTGTGTGGA
CGAGAGGATGGAGTTTTTTTTTTTGTAAACATGGCCCAGCTATATGTGTT
TGGTCCCTCTACAGATCAGGCGTCCGTTGGTGTATTTTGGGGAGTACTGT
ACTATGGTGGT back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig1041:4395..9355+ >mRNA_Ecto-sp8_S_contig1041.668.1 ID=mRNA_Ecto-sp8_S_contig1041.668.1|Name=mRNA_Ecto-sp8_S_contig1041.668.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1041:4395..9355+ (Ectocarpus species8 EcLAC_412) ATGGTAATGTTCAAAAACCGAAGTACCGCTGTTGCGGCGGCGCTCCTGCT TGCCCACCATCGACACGGAAACATGCCGCCTCTTGCGGCAGGCTTCGTTG CACCCACCCCGATCGCCGCTCAGCCGCAGCGGCGGCTTCCACCCTGGTGT GAACCCGTATCGTTTCCGCCTGCTTGGGACTCGTCAAGGCCAGTGCCGGC AAGTAGCAAACCGCCGGCTTCCAACTGCAACTACCGCTCCTGCGCCGCGC GAGGTGTTCGACCAACGAGCGCAACGACTTCCCACGCTGGTGCTTCTCCT TCCGGCAGCAGCGCGCCGAAGACCGGTGCCGACGGTTCGGGTGCAGGGTC GGCTACTTCTTCATCACCTAGTGTGGTTGTCACGCAGGCAGTGGAAGGGA GCAAGCACCCAGTAGGCGGGTTCGCAAACGGCGCTTTGATCCCATTGGCA GCGGAGGGAGGCAACAGCAGCGGGGCAGAAGGAGCAACGGTACGAGTAGA TAAGTGGGGGGAGGCGTCGGAAGGGAACTTGGCGGGAGAGTTCGAGTGGG AGGGCGGGGCAGAGGCTGCATGGACCGAGTTCGAGGACTGGCTCCTTCAA GACACGTACTCCAGATACGCAATCGGTTCAGGGAAACACGTTTTGTGGCG GCGCATGGTGCGAGAGGTGCCCGAGCTCATGGAGCGAACTCCTCAGGAGG CGCGGGAGAGATGGCTGAGACTCACGGGGAGGCTCAGCGCGGGCGGCGGA GAGGGAGGGAGCGGGAGAGAAGGGGGGGAGCTTATGGCAGGCTCACCGGC ATTAGACAACTTTTACATTCAGCCTCCCGTGCTGGAGCAATGGGAGGAAA TCGTCGAGGGCGAGGGAATGGGTTCTTTCCGCGGAAACGTGTTTGGGCAG CGAGGCTTGGCCGACGGGACGGCGATGACCACAGCGCCGATCGACATTTC GGGCAGGAAAATACAAGACCAGTACGTGGCCACGCAGTGCGGCGTGGTGT ACGAGCTGGGAGAGAGACGAGAGACAGACTTGGTCAGCCAGGCGTCTTCA AAGATGCTCAAGATTGCCCCGGCCACTGTGCTGGCGCTCGCTGGAGCATT CTACGCCTTGACAGCCCTGTCGCACCACATTCAAGTCGAGGTCTTCGTCA TTTGA back to top
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