mRNA_Ecto-sp8_S_contig1041.668.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1041.668.1
Unique NamemRNA_Ecto-sp8_S_contig1041.668.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1041.668.1 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI)

HSP 1 Score: 654 bits (1688), Expect = 7.040e-232
Identity = 343/361 (95.01%), Postives = 349/361 (96.68%), Query Frame = 1
Query:  238 MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCAARGVRPTSATTSHAGASPSGSSAPKTGADGSXAGSATSSSPSVVVTQAVEGSKHPVGGFANGALIPLAAEGGNSSGAEGAT-VRVDKWGEASEGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGGEGGSGREGGELMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 1317
            MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCA RGVRPTSATTSHAGASPSGSS PKTGA+G  AGSATSSSPS VVTQAVEGS+HP GGFANGALIPL+ EGG+SSGAEGAT VRV KWGEA+EGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGG EGGS RE GE+MAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI
Sbjct:    1 MPPLAAGFVAPTPIAAQPQRRLPPWCEPVSFPPAWDSSRPVPASSKPPASNCNYRSCAVRGVRPTSATTSHAGASPSGSSTPKTGANGPGAGSATSSSPSAVVTQAVEGSEHPAGGFANGALIPLSTEGGSSSGAEGATAVRVGKWGEAAEGNLAGEFEWEGGAEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGAEGGSRRERGEVMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 361          
BLAST of mRNA_Ecto-sp8_S_contig1041.668.1 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.620e-56
Identity = 106/218 (48.62%), Postives = 137/218 (62.84%), Query Frame = 1
Query:  724 AEAAWTEFEDWLLQDTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGGEGGSGREGGELM--------------AGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQRGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETD------LVSQASSKMLKIAPATVLALAGAFYALTALSHHIQVEVFVI 1317
            A+  WTEFEDWLLQDT++RYAIGSGKHVLW RMV EVPEL+ RTPQEAR RWL +TGRL+         R+GG                 +G+P ++ FY+QPP+L  WEE+ +G    SF G+V G  GLADG  + T  +D++GR++ DQYV T+CG V+ELG RR  D       ++  +S     AP   LA A A    T L+HH+Q+EVFV+
Sbjct:   22 ADMPWTEFEDWLLQDTFARYAIGSGKHVLWNRMVTEVPELIGRTPQEARRRWLHITGRLT-------DQRQGGXXXXXXXXXXXXXXXGSSGAPDVETFYLQPPLLHDWEELEDG----SFEGSVEGMGGLADGVLVRTRGVDLAGRRVADQYVRTECGAVFELGARRGADDDAATTALAPVASAFAAAAPLLALASAAAVLGATVLTHHVQLEVFVV 228          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1041.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8N9_ECTSI7.040e-23295.01Myb-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CN06_9STRA1.620e-5648.62Myb-like domain-containing protein n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1041contigEcto-sp8_S_contig1041:4395..9355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1884
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002440.1
Cds size1155
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1041.668.1prot_Ecto-sp8_S_contig1041.668.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1041 4560..8791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.518687-UTR-Ecto-sp8_S_contig1041:4394..45591681143140.518687-UTR-Ecto-sp8_S_contig1041:4394..4559Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1041 4395..4559 +
1681143140.572824-UTR-Ecto-sp8_S_contig1041:8791..93551681143140.572824-UTR-Ecto-sp8_S_contig1041:8791..9355Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1041 8792..9355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.5285332-CDS-Ecto-sp8_S_contig1041:4559..51731681143140.5285332-CDS-Ecto-sp8_S_contig1041:4559..5173Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1041 4560..5173 +
1681143140.5375223-CDS-Ecto-sp8_S_contig1041:5929..61371681143140.5375223-CDS-Ecto-sp8_S_contig1041:5929..6137Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1041 5930..6137 +
1681143140.546304-CDS-Ecto-sp8_S_contig1041:6341..64911681143140.546304-CDS-Ecto-sp8_S_contig1041:6341..6491Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1041 6342..6491 +
1681143140.5551221-CDS-Ecto-sp8_S_contig1041:8044..81131681143140.5551221-CDS-Ecto-sp8_S_contig1041:8044..8113Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1041 8045..8113 +
1681143140.563987-CDS-Ecto-sp8_S_contig1041:8677..87911681143140.563987-CDS-Ecto-sp8_S_contig1041:8677..8791Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1041 8678..8791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1041.668.1

>prot_Ecto-sp8_S_contig1041.668.1 ID=prot_Ecto-sp8_S_contig1041.668.1|Name=mRNA_Ecto-sp8_S_contig1041.668.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=385bp
MVMFKNRSTAVAAALLLAHHRHGNMPPLAAGFVAPTPIAAQPQRRLPPWC
EPVSFPPAWDSSRPVPASSKPPASNCNYRSCAARGVRPTSATTSHAGASP
SGSSAPKTGADGSGAGSATSSSPSVVVTQAVEGSKHPVGGFANGALIPLA
AEGGNSSGAEGATVRVDKWGEASEGNLAGEFEWEGGAEAAWTEFEDWLLQ
DTYSRYAIGSGKHVLWRRMVREVPELMERTPQEARERWLRLTGRLSAGGG
EGGSGREGGELMAGSPALDNFYIQPPVLEQWEEIVEGEGMGSFRGNVFGQ
RGLADGTAMTTAPIDISGRKIQDQYVATQCGVVYELGERRETDLVSQASS
KMLKIAPATVLALAGAFYALTALSHHIQVEVFVI*
back to top

mRNA from alignment at Ecto-sp8_S_contig1041:4395..9355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1041.668.1 ID=mRNA_Ecto-sp8_S_contig1041.668.1|Name=mRNA_Ecto-sp8_S_contig1041.668.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4961bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1041:4395..9355+ (Ectocarpus species8 EcLAC_412)
CCCTGCCCTGCTCAGCTTGGCTTTCTTCTCACGCACAGGCGTTTGCTGTG TTCCGTTCACAGAGCATACCTCTGCCTTGCAGAAGGTGAAGTCTGGCAAA GCATTGACAAACGTGTGCAGTGTCGCCAGCCCGGGGTGTGTGCAGCAGTT GCGCACGATACGAGCATGGTAATGTTCAAAAACCGAAGTACCGCTGTTGC GGCGGCGCTCCTGCTTGCCCACCATCGACACGGAAACATGCCGCCTCTTG CGGCAGGCTTCGTTGCACCCACCCCGATCGCCGCTCAGCCGCAGCGGCGG CTTCCACCCTGGTGTGAACCCGTATCGTTTCCGCCTGCTTGGGACTCGTC AAGGCCAGTGCCGGCAAGTAGCAAACCGCCGGCTTCCAACTGCAACTACC GCTCCTGCGCCGCGCGAGGTGTTCGACCAACGAGCGCAACGACTTCCCAC GCTGGTGCTTCTCCTTCCGGCAGCAGCGCGCCGAAGACCGGTGCCGACGG TTCGGGTGCAGGGTCGGCTACTTCTTCATCACCTAGTGTGGTTGTCACGC AGGCAGTGGAAGGGAGCAAGCACCCAGTAGGCGGGTTCGCAAACGGCGCT TTGATCCCATTGGCAGCGGAGGGAGGCAACAGCAGCGGGGCAGAAGGAGC AACGGTACGAGTAGATAAGTGGGGGGAGGCGTCGGAAGGGAACTTGGCGG GAGAGTTCGAGTGGGAGGGCGGGGCAGAGGCTGCATGGACCGAGTTCGAG GACTGGCTCCTTCAAGACACGTACTCCAGGTATGAACATTGATCCAGATG GTGTTGGTGAGCAGCGGTAGGTGGGCTTGATACATGTGGTAGAAAGACGA ACAGGCGGCTGCTTATCATACATGCCCTGGTATGCTACCCGCGGTACACT CCACCCTGCTTTAGATCAAGCTTTTGCTCTTTGAGGTTGGACGATGTTGG TACATACGGTACGATGGTGGTGACAATATTGAGCTACGGTTCAAGTATAT GTAGTGATAATCCAGCCCAAGCATCTTCATGCTGCGCCGCGTCTTCCCGA CAGCAAGCAGCCCGGGCTATTAGGACACACCATAATCCGCGCGTTGCTCG TTTGTTCACCAGTGCTTCGAGGCTGTCGTGGTTGATAGGCTTTGGCGTTG ATTGTAGGAACGGTGGCGTGAGAAAGAGATGCATCGTCAATCATCAGGTG ACGGAAACAAATGAGTTCGCCTGCATGACGCTGTGAGCGATACACGAAGC ATCGCTCGTTTGTGGAGAACCCCGGGACACGGAGTAGGCGTTGATTGGTG AACGATTCCCCCGTTGCCCATCTCCATGCAGCAATTCTGCCCCCACTGCC ACTGGCCTTGTGATTTCAATGCATAGGGTACCTTTGTTGAGCCAATACTG CACAAGAAAAACTAGTCATCTCCGCGAAGGCATGCCCGCCCCGAGCGAAG CCAAGATGCACAAATAAACGTGGAACGTTCCACTTTTCCCGAACCCATAC CGCCGTATCCTTTTGTGTTAACCGGCCATGAACAGATACGCAATCGGTTC AGGGAAACACGTTTTGTGGCGGCGCATGGTGCGAGAGGTGCCCGAGCTCA TGGAGCGAACTCCTCAGGAGGCGCGGGAGAGATGGCTGAGACTCACGGGG AGGCTCAGCGCGGGCGGCGGAGAGGGAGGGAGCGGGAGAGAAGGGGGGGA GCTTATGGCAGGCTCACCGGCATTAGACAACTTTTACATTCAGGTAGGTC TCGATGGGTCACAAGCTGTGGTTCACTCCGTGGTGTTGATTACCGGCCAA GGCATCACCTTGTTGTGTGTTCAGCTCTCCCGTTGGTAGCCAAGTCAATT TGTCCCGTTGTGCCGCAAAGTTGTACGCAAAGGTTCCAACTCTTCGACCC TCCCCATCCCCCCGCTCTCAAAACGCCTGTTGGCCGACATAACCCAGCCT CCCGTGCTGGAGCAATGGGAGGAAATCGTCGAGGGCGAGGGAATGGGTTC TTTCCGCGGAAACGTGTTTGGGCAGCGAGGCTTGGCCGACGGGACGGCGA TGACCACAGCGCCGATCGACATTTCGGGCAGGAAAATACAAGACCAGGTA TAATCCAAAGCTTGCGGGGCACTTATCCCGATAGAGAGGAATTCTTACAA CGCGTCGTTTTCGATGTATGGTCATACTGAAAGATCGGGACCTTTCTAAA CCTTGTAAGACGGGATGTTGAATACGGTGTTTGCGAACATCTGATTCTGG TCTTGTCTTGGTCTTTTTTGTCCCCCCGAGCGCCGAAGTCCGATGGATCT TTAGGAATATGGTCTTTTGCTTTCGCGAATTGCCCCCAAAGACCCGAGAA AAGCTCCGATTTTGTCTTGCTCAGTTTTGTCTTCGAAAGAACAATTTTTC ATTGGCCTACACACCCCGAGATACTCCCGACGACGTCCTCCCGACACGCG CCGCACCATCCCGTGGAGCTGCGCAAACACACACAACTCGGCCGTCATAG GCGACACCATGGCGAACAAACTACAGCAGTACCGCCAGACAGACAGTCAG ACAGACGTCACTGCACCGCAGACCCGGTGCGCATTGCATGCTGCCGACAT GGTGCAACTTTTGCGTCATCTTAGATGTATATGTGTGAACCGAAGCAACC GCTCTTCTACATGCATGCTCATGAGCGACACATCAAGCCGGCGTGAGGAG GGTGAGGCGGTGAGGCGGGCGGCATAGATCTCAGGAGTGCGGCACAGGTG GAGGCGGAGGTGATGGAGTAAGGGATGCTTCAAGCGGCGTGGGAGCGTGA GGAGCTGCTGCAGCGCGTGCGTCCTGTGGACCGTGCTGCGGTGATTCGTT TGACGGGGAACGATCGACTCCGTCGACGACTGACTGCGATGTGTATCACA ACTTGTTCGCGTGCTGAAGGGGCACACACATGGATGCCTCCGCTATTTAC GGCGCTACGCTTCCCATGAACTCCTGGCAACTGAACTGGGCCAGCCGCCT GTTCATGAGTACGTTGCTCCACCAGTATTCTCGCCATGACTTACTTAGTT AGCTGGGGGTGTGGGTGCAGTTATAGTAGAGTAGTAGTAGCCTTGTTGGG GTGGAGGCGGAAGCTCGGAAATAAATATGTTGTTGTGTTCCGAGTCGGCT CAACCATCTGTCTGCCGCCGCCGGCAAAGGGGCTCCGTCGTATTGAACGC AACGTTCTTGGAATTTTCCGCGTGCTCAAGACCGAAAGAATCACACTCCA GTCTTCGCAAGCAGTTTTGAAACACGATTCCGGTCTTGGTTTTGGACTTG CTTCCGACTTCCAAGACCAAGACCTGAGACCAGTCCGCAAACACCCTAAT GTCAGGACGATAGCCTCCCTGCCCTTTTCTGTCGTCGTGAAAGTTCAGGC ATCTAGGCAACAGTTTAGTTTGCCGCTGCCTTTTGTTTTACAGAAGTCTG CGGTGGCTTACCCGCAAGATAAGTCAACCACATGTTTCCTTTTGTGTCAC AAGTGTCCAGTACGACTTTTTGCAGGTTGAGCAAGATGACGCAGCAACGA TGCACGTGGGTTTTGCATTCCCATACACAATGACCTGCTGACTGTCTTCC GTCTTGATTTCTTATCCTTTCCTCCCCCCGTGCTGTGTTGCTCTTCGCAG TACGTGGCCACGCAGTGCGGCGTGGTGTACGAGCTGGGAGAGAGACGAGA GACAGACTTGGTCAGCCAGGTAGGCCGAAATAGGACCTGGTCTTCTTTGC GCAGACGTTGTGTCCAGTTCATGGTTTTTTTCCAGTCTCTAGTCACTCGC ATTAAATGTTCCACTATTTCGGTTTCGTGCGCTTGCGTCCTCTTGTTATA CGAGACTGTTCCCTTTGCCACCAGGACAAACACCGAGACAACAGTCAGTC CAGTATTAGATAGAGCGTGTGACTTATTTGTTGTCGGGGAGGTGGTGCTA TGTTTCCCCCGTTGGTGACGGTAGTCTTAATGTGCGTGCAGCATTCCATA TGCAGCACATCATCGACAGTTTACCCTGCAGCGTGTCGACCAACTACGTC GACACCCCGAAGTAGAGAAGAGCAGGGATTCTTACCTGCTATTCTGGGGC CTTACGCTGGATTCCCAACGGCAAGGAAGAAGATGCCTTCACCCCCATGT TCTGGCGCTTGTCTCTTTTCCGAATGACAGACGACGCGACGTCACAAACA AATGAAAAACAAAAATGTGTTCGTCCGACGGGTGGTGCATGCATCTTAAC CTGTGCCCTTGATTGAAAACCTGTGTGATCCAGGCGTCTTCAAAGATGCT CAAGATTGCCCCGGCCACTGTGCTGGCGCTCGCTGGAGCATTCTACGCCT TGACAGCCCTGTCGCACCACATTCAAGTCGAGGTCTTCGTCATTTGATCG AAGGCCAGTCGTCAAACATTATATATAAAAGCCTCCGATTGCAATAGTAG AAAGTGGTAAATGTTTTGGCTTGGGGCGACGTTTGAGTGCGATGTGAGCT GCGCACGTCTGTCACAGTGTGCTAGCACAACACAAGTCCTGCGTTGGGTG CAAGCCTCTTAGGAGTTGATGCTTGCGGGAACCAAGGTGTACCTGGAGTG CACGGGTTGATTCTAGCGTTCTTGTTTTGTGTTACTAGGTTACTAAGTGG GTGTGGCAAGTAGATTATAGCTCCGTTTGGTATGCTCAGGGGTGGTTTTG TGTCGGGAGCGAGAGTGGGGAGTGGAGAGGGGCAGGCGGGCGAATTACTA GTTCCTCCCACGTTTGCGTAGTTAAAACCCAAGGCATTGGTTCAGGCGGT CATGGAACTGCGGAACAGCCCGGGTCTGTTTCTCCCGAGAAGTGTGTGGA CGAGAGGATGGAGTTTTTTTTTTTGTAAACATGGCCCAGCTATATGTGTT TGGTCCCTCTACAGATCAGGCGTCCGTTGGTGTATTTTGGGGAGTACTGT ACTATGGTGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1041:4395..9355+

>mRNA_Ecto-sp8_S_contig1041.668.1 ID=mRNA_Ecto-sp8_S_contig1041.668.1|Name=mRNA_Ecto-sp8_S_contig1041.668.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1041:4395..9355+ (Ectocarpus species8 EcLAC_412)
ATGGTAATGTTCAAAAACCGAAGTACCGCTGTTGCGGCGGCGCTCCTGCT
TGCCCACCATCGACACGGAAACATGCCGCCTCTTGCGGCAGGCTTCGTTG
CACCCACCCCGATCGCCGCTCAGCCGCAGCGGCGGCTTCCACCCTGGTGT
GAACCCGTATCGTTTCCGCCTGCTTGGGACTCGTCAAGGCCAGTGCCGGC
AAGTAGCAAACCGCCGGCTTCCAACTGCAACTACCGCTCCTGCGCCGCGC
GAGGTGTTCGACCAACGAGCGCAACGACTTCCCACGCTGGTGCTTCTCCT
TCCGGCAGCAGCGCGCCGAAGACCGGTGCCGACGGTTCGGGTGCAGGGTC
GGCTACTTCTTCATCACCTAGTGTGGTTGTCACGCAGGCAGTGGAAGGGA
GCAAGCACCCAGTAGGCGGGTTCGCAAACGGCGCTTTGATCCCATTGGCA
GCGGAGGGAGGCAACAGCAGCGGGGCAGAAGGAGCAACGGTACGAGTAGA
TAAGTGGGGGGAGGCGTCGGAAGGGAACTTGGCGGGAGAGTTCGAGTGGG
AGGGCGGGGCAGAGGCTGCATGGACCGAGTTCGAGGACTGGCTCCTTCAA
GACACGTACTCCAGATACGCAATCGGTTCAGGGAAACACGTTTTGTGGCG
GCGCATGGTGCGAGAGGTGCCCGAGCTCATGGAGCGAACTCCTCAGGAGG
CGCGGGAGAGATGGCTGAGACTCACGGGGAGGCTCAGCGCGGGCGGCGGA
GAGGGAGGGAGCGGGAGAGAAGGGGGGGAGCTTATGGCAGGCTCACCGGC
ATTAGACAACTTTTACATTCAGCCTCCCGTGCTGGAGCAATGGGAGGAAA
TCGTCGAGGGCGAGGGAATGGGTTCTTTCCGCGGAAACGTGTTTGGGCAG
CGAGGCTTGGCCGACGGGACGGCGATGACCACAGCGCCGATCGACATTTC
GGGCAGGAAAATACAAGACCAGTACGTGGCCACGCAGTGCGGCGTGGTGT
ACGAGCTGGGAGAGAGACGAGAGACAGACTTGGTCAGCCAGGCGTCTTCA
AAGATGCTCAAGATTGCCCCGGCCACTGTGCTGGCGCTCGCTGGAGCATT
CTACGCCTTGACAGCCCTGTCGCACCACATTCAAGTCGAGGTCTTCGTCA
TTTGA
back to top