mRNA_Ecto-sp8_S_contig104069.662.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig104069.662.1
Unique NamemRNA_Ecto-sp8_S_contig104069.662.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig104069.662.1 vs. uniprot
Match: A0A127MD08_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MD08_9SPHN)

HSP 1 Score: 69.7 bits (169), Expect = 3.470e-13
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 LHEHSSARTEKLYCQYYNKRPGKSLVAFEYLSAPAR 108
            L+EHS ARTEKLYCQYYNKR GKSLV FEYLSAPAR
Sbjct:  239 LNEHSDARTEKLYCQYYNKRTGKSLVGFEYLSAPAR 274
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BLAST of mRNA_Ecto-sp8_S_contig104069.662.1 vs. uniprot
Match: UPI001592FBEE (hypothetical protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001592FBEE)

HSP 1 Score: 68.6 bits (166), Expect = 9.250e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 LHEHSSARTEKLYCQYYNKRPGKSLVAFEYLSAPAR 108
            L+E SSA+TEKLYCQYYNKR GKSLVAFEYLSAPAR
Sbjct:  238 LNERSSAKTEKLYCQYYNKRTGKSLVAFEYLSAPAR 273
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BLAST of mRNA_Ecto-sp8_S_contig104069.662.1 vs. uniprot
Match: A0A2G2D6V5_9SPHN (Uncharacterized protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2D6V5_9SPHN)

HSP 1 Score: 68.6 bits (166), Expect = 9.510e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 LHEHSSARTEKLYCQYYNKRPGKSLVAFEYLSAPAR 108
            L+E S+ARTEKLYCQYYNKR GKSLVAFEYLSAPAR
Sbjct:  241 LNERSNARTEKLYCQYYNKRSGKSLVAFEYLSAPAR 276
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BLAST of mRNA_Ecto-sp8_S_contig104069.662.1 vs. uniprot
Match: UPI001AA01DE4 (hypothetical protein n=1 Tax=Parasphingorhabdus sp. JHSY0214 TaxID=2806553 RepID=UPI001AA01DE4)

HSP 1 Score: 51.2 bits (121), Expect = 2.080e-6
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   25 TEKLYCQYYNKRPGKSLVAFEYLSAPAR 108
            TEKLYCQYYNKR G+SLV FEY+SA  R
Sbjct:  254 TEKLYCQYYNKRTGQSLVGFEYMSASGR 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig104069.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A127MD08_9SPHN3.470e-1388.89Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
UPI001592FBEE9.250e-1388.89hypothetical protein n=1 Tax=Parasphingorhabdus fl... [more]
A0A2G2D6V5_9SPHN9.510e-1388.89Uncharacterized protein n=1 Tax=Sphingopyxis sp. T... [more]
UPI001AA01DE42.080e-678.57hypothetical protein n=1 Tax=Parasphingorhabdus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig104069contigEcto-sp8_S_contig104069:1..111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143140.220399-CDS-Ecto-sp8_S_contig104069:0..1111681143140.220399-CDS-Ecto-sp8_S_contig104069:0..111Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig104069 1..111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig104069.662.1prot_Ecto-sp8_S_contig104069.662.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig104069 1..111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig104069.662.1

>prot_Ecto-sp8_S_contig104069.662.1 ID=prot_Ecto-sp8_S_contig104069.662.1|Name=mRNA_Ecto-sp8_S_contig104069.662.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=37bp
LHEHSSARTEKLYCQYYNKRPGKSLVAFEYLSAPAR*
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mRNA from alignment at Ecto-sp8_S_contig104069:1..111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig104069.662.1 ID=mRNA_Ecto-sp8_S_contig104069.662.1|Name=mRNA_Ecto-sp8_S_contig104069.662.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104069:1..111+ (Ectocarpus species8 EcLAC_412)
CTCCACGAGCACAGCAGCGCGAGAACGGAAAAGCTCTATTGCCAATATTA
TAACAAACGGCCCGGCAAGAGTCTGGTCGCTTTTGAATATCTGAGCGCAC
CTGCTCGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig104069:1..111+

>mRNA_Ecto-sp8_S_contig104069.662.1 ID=mRNA_Ecto-sp8_S_contig104069.662.1|Name=mRNA_Ecto-sp8_S_contig104069.662.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104069:1..111+ (Ectocarpus species8 EcLAC_412)
CTCCACGAGCACAGCAGCGCGAGAACGGAAAAGCTCTATTGCCAATATTA
TAACAAACGGCCCGGCAAGAGTCTGGTCGCTTTTGAATATCTGAGCGCAC
CTGCTCGCTAA
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