mRNA_Ecto-sp8_S_contig10403.654.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10403.654.1
Unique NamemRNA_Ecto-sp8_S_contig10403.654.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10403.654.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 570 bits (1468), Expect = 2.260e-187
Identity = 307/323 (95.05%), Postives = 308/323 (95.36%), Query Frame = 1 
Query:  271 EWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLL-FEDETVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAAAATVG---ADGGTGDGGRVSAVMDVVNQVNRVGDLKLSLDERMETLKRVRSRLESVRREANAERTAQSEKARFEAHRPSRWVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 1227
            EWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLL FEDE VEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAA         ADGGTGDGGRVSAVMDV NQVNRVGDLKLSLDER+ETLKRVRSRL SVRREANAERTAQSEKARFEAHRPSR VPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGG AKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ
Sbjct:  630 EWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLLLFEDEAVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAXXXXXXXXXADGGTGDGGRVSAVMDVFNQVNRVGDLKLSLDERVETLKRVRSRLGSVRREANAERTAQSEKARFEAHRPSR-VPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGAAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 951
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BLAST of mRNA_Ecto-sp8_S_contig10403.654.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 577 bits (1487), Expect = 9.710e-184
Identity = 305/320 (95.31%), Postives = 310/320 (96.88%), Query Frame = 1 
Query:  268 SEWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLLFEDETVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAAAATVGADGGTGDGGRVSAVMDVVNQVNRVGDLKLSLDERMETLKRVRSRLESVRREANAERTAQSEKARFEAHRPSRWVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 1227
            SEWEEGEPTDFVYTGLFPGEAKGWGGR+G EEEPVLLFEDETVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEA+LSVAEKHQQQLEA A      DGGTGDGGRVSAVMDVVNQVNRVGDLKLSLDER+ETLKRVRSRLESVRREANAERT QSEKARFEAHRPSR VPPAPSRFDMVASGVTIRSYRSASLVAE+LSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALD+TVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ
Sbjct: 1630 SEWEEGEPTDFVYTGLFPGEAKGWGGRQGGEEEPVLLFEDETVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEASLSVAEKHQQQLEATA------DGGTGDGGRVSAVMDVVNQVNRVGDLKLSLDERVETLKRVRSRLESVRREANAERTVQSEKARFEAHRPSR-VPPAPSRFDMVASGVTIRSYRSASLVAENLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 1942
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10403.654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI2.260e-18795.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE9.710e-18495.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10403contigEcto-sp8_S_contig10403:2545..6390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1259
Hectar predicted targeting categoryother localisation
Exons5
Cds size1257
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143139.8297777-CDS-Ecto-sp8_S_contig10403:2544..29521681143139.8297777-CDS-Ecto-sp8_S_contig10403:2544..2952Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10403 2545..2952 +
1681143139.8402174-CDS-Ecto-sp8_S_contig10403:3514..37421681143139.8402174-CDS-Ecto-sp8_S_contig10403:3514..3742Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10403 3515..3742 +
1681143139.8494277-CDS-Ecto-sp8_S_contig10403:4419..45771681143139.8494277-CDS-Ecto-sp8_S_contig10403:4419..4577Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10403 4420..4577 +
1681143139.8586922-CDS-Ecto-sp8_S_contig10403:5368..55781681143139.8586922-CDS-Ecto-sp8_S_contig10403:5368..5578Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10403 5369..5578 +
1681143139.8743849-CDS-Ecto-sp8_S_contig10403:6137..63901681143139.8743849-CDS-Ecto-sp8_S_contig10403:6137..6390Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10403 6138..6390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10403.654.1prot_Ecto-sp8_S_contig10403.654.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10403 2545..6390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10403.654.1

>prot_Ecto-sp8_S_contig10403.654.1 ID=prot_Ecto-sp8_S_contig10403.654.1|Name=mRNA_Ecto-sp8_S_contig10403.654.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=419bp
FPPTDPPALPLPATPAPTPTTRRRKPHHPLRGHKKKKKRWHQWRLAVRGG
VTAGHRRSGLREAEGSRPGSGPWGGRDGCRRRGGEDGEGSEWEEGEPTDF
VYTGLFPGEAKGWGGREGEEEEPVLLFEDETVEDGQALERLVARESELMS
QEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAAAATVGADGGTGDG
GRVSAVMDVVNQVNRVGDLKLSLDERMETLKRVRSRLESVRREANAERTA
QSEKARFEAHRPSRWVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAW
MVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLI
DELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRD
PLEGRRTAQVCADFFFLL*
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mRNA from alignment at Ecto-sp8_S_contig10403:2545..6390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10403.654.1 ID=mRNA_Ecto-sp8_S_contig10403.654.1|Name=mRNA_Ecto-sp8_S_contig10403.654.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3846bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10403:2545..6390+ (Ectocarpus species8 EcLAC_412)
TTTCCTCCGACAGATCCCCCGGCTCTGCCTCTTCCGGCCACCCCTGCGCC
GACGCCTACCACCCGCCGCCGGAAACCCCACCACCCCCTCCGAGGACACA
AGAAGAAGAAAAAGAGATGGCACCAGTGGCGACTCGCCGTCCGCGGCGGC
GTTACCGCCGGGCACCGCCGCTCAGGCCTCAGGGAAGCGGAGGGGTCGCG
CCCTGGGAGTGGGCCTTGGGGAGGGCGGGATGGGTGCCGACGACGGGGGG
GGGAGGACGGGGAAGGGTCGGAGTGGGAAGAGGGCGAGCCCACGGACTTC
GTGTACACGGGGCTCTTCCCCGGAGAGGCCAAGGGCTGGGGCGGACGGGA
GGGGGAGGAGGAGGAGCCCGTGCTGCTGTTCGAGGACGAGACCGTGGAAG
ATGGACAGGTGAGTGTTTTTGTTTCGCTCGGCAAGCGGTGCTGCTTTTGG
CTGTAAACGCATACTTTTTACCTGTGGGGCTGTTCCCTTGTACAGCGCGC
GGTGCTGCTTGCTTGCAGTGCATGGCGCCGTTTTTGGACGCCCCCCCCAA
GCAATGCACCAAAGTCCGCGTCATCGTCGTTCTTGTCCTGGGCGCACTGC
AGACAACGTGGTTCACAATGTTCGGCACCACTTTTTTGTGAACAATTTCT
GTGGGATACCGCAAGGCACGTTGACGCCTTTGGGCATACAGATGCTAATG
GCAAAGAAAAATGTGCTTACAATTCGCCGATCATCCTTATTGATTCACCT
GAGCATCTTCCGCCCCCGTTTTCGTTTTCTCTCCGCCGGGATTATCATTG
TTCCCGCCTCTTTCCCCAAGCCCATTCACTCCACTCTTGCCGTTGGTTTG
AACAAACTCTTGCCGTCGGTTTGAACAGACCCCTGCTCGGTCCTCTTGAG
GACACGTGGTCAATGGTCTAACCGCTAAGGCATTGAAAACATAACGGTAC
GCCCCCCCCCCCGCCATCAGGCCCTTGAACGCCTGGTCGCCCGCGAATCG
GAGCTCATGTCCCAGGAGGACCAAGAGAGCGCGGCGGAGCGTAAGACCAG
GGCGGAGCTCGTCACCGCGGAGGCGGCCTTGAGCGTAGCCGAGAAGCACC
AGCAGCAGCTGGAGGCAGCCGCCGCCGCCACCGTTGGCGCCGACGGGGGG
ACGGGGGACGGGGGTCGCGTGTCCGCGGTGATGGACGTCGTCAACCAGGT
GTGTTGTTCGCGCCAGTCCCCTTCGCGAGGACATTATCAAGTTAGGGTCG
GGGATAGGGATACGATACCCCCCCCCCCCCCCTCTCTATTTTAGTAGAGT
GTGCACAGTTTTTTGTTGGGAAACGCTGTTGGTGGCTGCTGGCGGGTGAT
TCAAACCAACGCGTGCGTTGCTTTCATCTTGCATCACGCCTTGATTACAC
TATTTGCTATTGCTGCTATGCTCTGACGGGCCCACTCCGGAGGCGCGCCT
TGTAGATTTATGATGAAGTCCTAGGGATGGCGGCGGTCCGTCCGCGTGCG
GGTAAAGAATGGCAACGACATCCCCGCTCAGATTTTGGAGTGTGATTTTC
CGTCCGTCGGTCCTCCGGTTCAGCGCGCGGTCTTCGTCCCAGCACGCAAA
AACCCCAACGCACACACGCACGTACGGGACGCACGCTTGAGCTGCTTTAA
CTTTTCTCCCTCTTGCCTCCTGTTTTCCGTGTCGGCACTCGGTCGCACAA
CACAAGTGATGGTGAAATTGCTTTCTCTGATATCTGTTTTTTCGTTTGTG
CACGGTTCTGGAAATTGTTTAGAACATTCCCAGATCCGTTCCTCATAATA
CATGAGTATGAGTATCTTACGCTATCACTCTCTCGTTGCCTATCTCTTCT
GTTCTATCTGTTCTGATGGGACCAGGTGAACCGAGTGGGGGACCTGAAGC
TCTCTCTTGACGAGAGGATGGAGACGCTGAAGCGCGTGAGGTCGCGGCTT
GAGTCGGTCCGGCGGGAGGCCAACGCGGAGAGGACGGCGCAGTCGGAGAA
GGCCCGCTTCGAGGCACACCGGCCCAGCAGGTGGTGGTGGTTGTTTGTGA
CGGCTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGTC
TTTGCCGTCGTCGCCGTCGTTGTTGCTGCTGCTGTTGTCGTCGTAGACGT
TGATGCTAATGTTGATTATTTTGCGAACAGTCACAGGTGTTGACAGTCGT
GTTATTGAGGGGCGAGGCCGGTTGCGCAGCAAGCAGCACACGCAAGGGGT
ACAGAGTGCTCGTTAACGTGAAGCAGGGACGGATGATATGCTTGAGCCAA
CAGGCGCAGCCAAACATGTCGCCCAAGTGCAAATCGAAACGATGCCCGAG
TTTAGCTTAGGCCCGCCCCATTATGTCTACACCGAGTGCGGTCGTGTGAC
CTCAGGGATCGTATCGATTATTTGTCTCCGGGTTCACGACAAAAATCAGA
ACGGTTGTCACACCAACATTGCACGATTTTGTCTGCCGTCTTTTTGCGGA
GACAGGGTCCCTCCCCCTCCCCGCACTCTCGTGGCATGCAGCGTGGTACG
GCATAAAGGTGTATTTGTCTTCCCATGAAACGAAAAACACTACAAAGTAG
CGTCTATTCATTCCTCCGGCGGTGAGTGCGGTCGATGCTGTCTCGTTGTC
ATTCTTCTCCCCCCCCCAAAAAAAGAACAAAATGCCATAGCAACGTAGTT
TCGAAACGGGTTTTTTTCCCTACTCTGATTTTGTTGTTTATTTACGCACT
TGTACGTTTGCTGCTGCCATGCAGGGTTCCACCCGCCCCTTCGCGCTTCG
ACATGGTGGCCAGCGGCGTCACGATTCGATCTTACCGCTCAGCGAGCCTC
GTCGCGGAGGACCTCTCCCTGCGTGCGTGGATGGTGGTGGCAACGCCCCT
GCGGCCCTGGTGCGGCGGGGGCGACGCGAAAGAGTCCGGGATGTTTCCGG
GGGTGTGGGACTCGCTCGGTTTCCTGCCCAACAGGTGCGGGGAGGGGAAG
ACAGAGGTGGCGATAGCCGTGAGCGATATAGTGGTGGTACTTTCCAGAAA
ATCTGATAAAAAATCGCAGAAAAGACTACACTACCGGATTTTTTTTATAC
CCTGTGTTACATATTTGTACTGCCGTATGGTGCATGGTATATCATGCCAG
TGCTACCTAGGGGGAGGCGAGATCGTACAAAATATTATAGAACGTCCCCG
TGTTACCTTCCTCCTATCTGTGTGGCCCCTGCTGGTACGATGCGTCAAGT
GTATGCAGGTAGGTGTAGACTGGCATCACAAGGTATGGGGACGAATTTGT
CACACACACACACACAGAGTCGAACTAGCCGAAAAAGCCCAGAACGCCCC
TGCTGCGCTCTGGCACGTACGACCTCGAGGACCATCTGTACGGAAAGTTT
CGATACAAGTGCAATCTTGCACGAAAGTGAACAACGAAACCGAACACGAA
AAGGAAAGACGCGAATTCGTGAGAACAGAATGGAAACAAAAACAACTAGT
ACAAACGTTTTCTTTTTTCATTTTTTTTTTCTTCCACGGCCAGGGATCCC
ATGTTCGCCAAGGAAGCTCTGGACGTGACCGTCCTCATCGACGAGCTCGA
CGCCAGCCTCACGCGGTCCCAGTACTCCACCATCATGAGCATCGTCATGG
ACAACTTCCCCGAGCCTTGGTCCATCTGCCCCCCGGTCATCGAGTGGCCG
AAGCGGGACCCGGAGGTGTCGCAAGGGGTGTGCCGGGACCCTCTCGAGGG
GCGGAGGACGGCTCAGGTGTGTGCTGACTTTTTTTTTTTGTTATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10403:2545..6390+

>mRNA_Ecto-sp8_S_contig10403.654.1 ID=mRNA_Ecto-sp8_S_contig10403.654.1|Name=mRNA_Ecto-sp8_S_contig10403.654.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10403:2545..6390+ (Ectocarpus species8 EcLAC_412)
TTTCCTCCGACAGATCCCCCGGCTCTGCCTCTTCCGGCCACCCCTGCGCC
GACGCCTACCACCCGCCGCCGGAAACCCCACCACCCCCTCCGAGGACACA
AGAAGAAGAAAAAGAGATGGCACCAGTGGCGACTCGCCGTCCGCGGCGGC
GTTACCGCCGGGCACCGCCGCTCAGGCCTCAGGGAAGCGGAGGGGTCGCG
CCCTGGGAGTGGGCCTTGGGGAGGGCGGGATGGGTGCCGACGACGGGGGG
GGGAGGACGGGGAAGGGTCGGAGTGGGAAGAGGGCGAGCCCACGGACTTC
GTGTACACGGGGCTCTTCCCCGGAGAGGCCAAGGGCTGGGGCGGACGGGA
GGGGGAGGAGGAGGAGCCCGTGCTGCTGTTCGAGGACGAGACCGTGGAAG
ATGGACAGGCCCTTGAACGCCTGGTCGCCCGCGAATCGGAGCTCATGTCC
CAGGAGGACCAAGAGAGCGCGGCGGAGCGTAAGACCAGGGCGGAGCTCGT
CACCGCGGAGGCGGCCTTGAGCGTAGCCGAGAAGCACCAGCAGCAGCTGG
AGGCAGCCGCCGCCGCCACCGTTGGCGCCGACGGGGGGACGGGGGACGGG
GGTCGCGTGTCCGCGGTGATGGACGTCGTCAACCAGGTGAACCGAGTGGG
GGACCTGAAGCTCTCTCTTGACGAGAGGATGGAGACGCTGAAGCGCGTGA
GGTCGCGGCTTGAGTCGGTCCGGCGGGAGGCCAACGCGGAGAGGACGGCG
CAGTCGGAGAAGGCCCGCTTCGAGGCACACCGGCCCAGCAGGTGGGTTCC
ACCCGCCCCTTCGCGCTTCGACATGGTGGCCAGCGGCGTCACGATTCGAT
CTTACCGCTCAGCGAGCCTCGTCGCGGAGGACCTCTCCCTGCGTGCGTGG
ATGGTGGTGGCAACGCCCCTGCGGCCCTGGTGCGGCGGGGGCGACGCGAA
AGAGTCCGGGATGTTTCCGGGGGTGTGGGACTCGCTCGGTTTCCTGCCCA
ACAGGGATCCCATGTTCGCCAAGGAAGCTCTGGACGTGACCGTCCTCATC
GACGAGCTCGACGCCAGCCTCACGCGGTCCCAGTACTCCACCATCATGAG
CATCGTCATGGACAACTTCCCCGAGCCTTGGTCCATCTGCCCCCCGGTCA
TCGAGTGGCCGAAGCGGGACCCGGAGGTGTCGCAAGGGGTGTGCCGGGAC
CCTCTCGAGGGGCGGAGGACGGCTCAGGTGTGTGCTGACTTTTTTTTTTT
GTTATGA
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