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Homology
BLAST of mRNA_Ecto-sp8_S_contig104.643.1 vs. uniprot
Match: D8LRL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRL0_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 2.980e-148 Identity = 280/299 (93.65%), Postives = 283/299 (94.65%), Query Frame = 1
Query: 34 MRASGWKGWMLLGLGACGEAFVVRPLVHLPTSSGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPKPGDXXXXXXXXXXXVVFVPEVANNQLSSEAVEVDEISGRRLIVEFKAFGYFKRTCQLELLKSGDCVFSKGMVAKEKGAWRVEEEDGTDYLQFSCPLTEMYGVMFDVPSALLFWRVPLRKGADGSVVLQGGQIISEKNSLFGLKTTFIDEGSFKARVLANDEEFPVPDKIDFSSVPIPAGLAKLKKKGTGGITEQVPEPPLPGSR 930
MRASGWKGWMLLGLGACGEAFVVRPLVHLPTSSGSA XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APKPGD XXXXXXXXXVVFVPEV NNQL+SEAVEVDEISGRRLIVEFKAFGYFKRTCQLELLKSGDCVFSKGMVAKEKGAWRVEEE+GTDYLQFSCPLTEMYGVMFDVPSALLFWRVPLRKGADGSVVLQGGQIISEKNSLFGLKTTFIDEG+FKARVLANDEEFPVPDKIDFSSVPIPAGLAKLKKKG GGI EQVPEPPLPGSR
Sbjct: 1 MRASGWKGWMLLGLGACGEAFVVRPLVHLPTSSGSASXXXXXXXXXXXVPARCSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVAPKPGDPSXXXXXXXXXVVFVPEVTNNQLTSEAVEVDEISGRRLIVEFKAFGYFKRTCQLELLKSGDCVFSKGMVAKEKGAWRVEEEEGTDYLQFSCPLTEMYGVMFDVPSALLFWRVPLRKGADGSVVLQGGQIISEKNSLFGLKTTFIDEGTFKARVLANDEEFPVPDKIDFSSVPIPAGLAKLKKKGKGGIMEQVPEPPLPGSR 299
BLAST of mRNA_Ecto-sp8_S_contig104.643.1 vs. uniprot
Match: A0A7S1TVR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVR3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 7.810e-17 Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 538 KEKGAWRVEEEDGTDYLQFSCPLTEMYGVMFDVPSALLFWRVPLRKGADGSVVLQGGQIISEKNSLFGLKTTFIDEGSFKARVLANDEE 804
++ G WRVE E+G DYLQ P E+Y ++++ LFWR L+K A+G++ G+IISEK SL GLKT F+ EG+FK L + +E
Sbjct: 2 EQPGPWRVETEEGIDYLQVIMPTKEIYRELYNIKGDDLFWRAELQKDAEGNITGVDGKIISEKKSLLGLKTDFVLEGTFKMTPLTDQKE 90
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 434.9 |
| Seed ortholog evalue | 3.1e-119 |
| Seed eggNOG ortholog | 2880.D8LRL0 |
| Model size | 1457 |
| Hectar predicted targeting category | chloroplast |
| Exons | 6 |
| EggNOG OGs | 2EX1J@1,2SYSJ@2759 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_000200.1 |
| Cds size | 900 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143138.8293383-UTR-Ecto-sp8_S_contig104:3094..3618 | 1681143138.8293383-UTR-Ecto-sp8_S_contig104:3094..3618 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig104 3095..3618 - |
| 1681143138.9069374-UTR-Ecto-sp8_S_contig104:9176..9209 | 1681143138.9069374-UTR-Ecto-sp8_S_contig104:9176..9209 | Ectocarpus species8 EcLAC_412 | UTR | Ecto-sp8_S_contig104 9177..9209 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143138.842791-CDS-Ecto-sp8_S_contig104:3618..3702 | 1681143138.842791-CDS-Ecto-sp8_S_contig104:3618..3702 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig104 3619..3702 - |
| 1681143138.8535206-CDS-Ecto-sp8_S_contig104:4200..4315 | 1681143138.8535206-CDS-Ecto-sp8_S_contig104:4200..4315 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig104 4201..4315 - |
| 1681143138.8639653-CDS-Ecto-sp8_S_contig104:4934..5104 | 1681143138.8639653-CDS-Ecto-sp8_S_contig104:4934..5104 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig104 4935..5104 - |
| 1681143138.872953-CDS-Ecto-sp8_S_contig104:6756..6942 | 1681143138.872953-CDS-Ecto-sp8_S_contig104:6756..6942 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig104 6757..6942 - |
| 1681143138.8810542-CDS-Ecto-sp8_S_contig104:8515..8789 | 1681143138.8810542-CDS-Ecto-sp8_S_contig104:8515..8789 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig104 8516..8789 - |
| 1681143138.8986428-CDS-Ecto-sp8_S_contig104:9105..9176 | 1681143138.8986428-CDS-Ecto-sp8_S_contig104:9105..9176 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig104 9106..9176 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig104.643.1 >prot_Ecto-sp8_S_contig104.643.1 ID=prot_Ecto-sp8_S_contig104.643.1|Name=mRNA_Ecto-sp8_S_contig104.643.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=300bp
MRASGWKGWMLLGLGACGEAFVVRPLVHLPTSSGSASTTTTITTPGGAVP ARCSRGPQQQKQRRDRAATALASSQPSMMQDERQQQGFAAKVAPKPGDAS EEEAKKAAAVVFVPEVANNQLSSEAVEVDEISGRRLIVEFKAFGYFKRTC QLELLKSGDCVFSKGMVAKEKGAWRVEEEDGTDYLQFSCPLTEMYGVMFD VPSALLFWRVPLRKGADGSVVLQGGQIISEKNSLFGLKTTFIDEGSFKAR VLANDEEFPVPDKIDFSSVPIPAGLAKLKKKGTGGITEQVPEPPLPGSR* back to topmRNA from alignment at Ecto-sp8_S_contig104:3095..9209- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig104.643.1 ID=mRNA_Ecto-sp8_S_contig104.643.1|Name=mRNA_Ecto-sp8_S_contig104.643.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6115bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104:3095..9209- (Ectocarpus species8 EcLAC_412) TGTGCATCTGCACTGATCTGCACCTGCCGTACGATGCGTGCCTCCGGCTG
GAAAGGATGGATGCTCTTGGGGCTTGGCGCATGTGGAGAGGCCTTCGTAG
TTCGGTACGCCCAGTTGCGAGTGTATATTGGGGCGTTTCTCCTTGCTTAC
CTGTGCACACATTTTGTCTCAACCTCTGACCCAGATGATTCCTATTCAAC
GAGCTCCATCCCTACACAACACAACACATACCATACCCGCTGAATTGGGT
ATACTGTTGTCACCTTCAGGAACAATACACCCCCGCCTGCCCTATACCAA
CTTTTCCTCCATGCCTTCAGTTGCCCTAAGAACGAGATTGTTTCTACATG
GTATGACCTCGCTAAACATGTGTCTGCTGCCTCTCTCTCTGCAATATTGC
ACCCGGCCTTCTCCAAATAGGCCGCTCGTCCACCTCCCAACTAGCAGTGG
GTCGGCGTCAACAACGACCACCATCACAACACCAGGCGGAGCAGTACCGG
CGCGCTGCTCGCGAGGGCCGCAGCAGCAGAAGCAGCGTCGGGATCGTGCC
GCGACGGCATTGGCATCGTCGCAGCCAAGCATGATGCAGGACGAGAGGCA
GCAGCAGGGGTTTGCGGCGAAGGTGGCGCCGAAGCCTGGCGACGCTAGTG
AGGAGGAGGCTAAGAAGGCAGCAGCGGTCGTATTCGTACCGGAGGTACAG
TATGCATGTGTAGGCCGGTGTAGGGGGGGGGGTGGGTAGAGGCCGGGGGT
GTTGTTGTTGTTGCTGGCCTGTGGTGCTGTTGATCAAACCCACGCCGCCA
GAAGTCAGAATGTTGGTGATGTGATCCTTACGGGCAACCGGGGAGGGCAG
CAGGAACCGGCATGTTGCCGAACACGAAGTACTTGTAACTGCTGTATGAG
ACCGCTGCCATCCACCACCGCACATGTTTGACATCTAGGAGTCCGACACT
GCTTTGCTTTGCACGCACGGTCGGCGTGTTGCCGGCGTTGCGCGAGATCT
GGTTGGTGGCTGTTTGAACTACGTATATACGTTACCTCCACGCACGGCAC
TTGTATTGTTCATGCTACGTTGTGGAGTACACTGCTGCTGTCTGGCTTGT
TTCGCCCGTCCCTCCCTCATTGTAGTTGCTCTTGTCGACGGCTATGTATA
GTGCTACCACTTCTAAAAAGAAATACATTCTGCTGTAAGCGGATGCCTTT
TACACTTGAAGTCGTTGTGAACCCGGTGACTCTGGGTTGTCGTCGTTTTG
TTGGTCTTGATATAGTCTGCGGACACATGAGCCTGCGCCGTTGAACCACC
TGCAGATGGCACTTACCCTTAACACAGTTCCTCCTCAAGCCCTTCGGCCC
TACAGCAGTAGTACGCAACGGCGGTCGTTTTGTCATTTGCGCGTATGTAT
GTTCGATGCTTGATGGCAAAGAACCTGCTCTCGCGTTTCCGACTGACTTG
AGTTCTAGTCTCGACAGTAATTATTGTGGTTGCCGCTGCTTCCAGAAAAG
CTTGTGAACCGTTGAGAGCATGTTCGTTCCCACATGGGAAGTTACGGTTA
CGCAAGGAAGGTCGATGATTACTACAAAACCCGCAGCTACCACCGCTCTT
TCTCACTTGACCAATCGCGCTAAATGCATAATACCAATACCCTTTGGCCT
TACCTCGAATCGTTTCTTCCAACACGATAAACATCACACACACCGTTCTG
AAATCCCTAAATACTGGTATGCATTTATTTGTATACAGATACAGCAGTAT
GGGAAATCGTTCCGAGGTTTCGATGACGTTACCGTTTACGGAGGCCTCAC
GGCCCTAGTGTGTGCAGCCAAGTCTAAACCACGACCACCCTCTTCAATCC
AACATGTATCAATTCAAGTCATTTTTTTTTGTCGAATCGCCTCTATCGAT
AGTCATGCATGCATACAAACATGGACGTTACCACAATACCTCTCCTGGGG
CAACGGCGGGGCTTTAAGCAGTGACTGCAGTGACTGGCTGGTACTGCTGT
GGGCTTTGGTGACACAAGAGCCAGCGCCCCAGAGCGACAACAACAATATC
TTGTTACTGGTATTTCTGCAAGACAGGGCACACGACCGATTTTCTTTTCT
TTCGCCTCTTTGTTCTTGCTCTTCGGGTGGCGGTTCCGGGACAGACTACA
TTGTAGGACCAACCCGCGGGTGTTCGCGCCGTATTAATTTTCTCTCAAAC
CAAGCCAAGATTCGTTCGGTCGGTCTGTGCTTGTTTTTTTATTTTTCGCT
TTGCCTCTGCTTGGAAGGTGGCGAACAACCAGCTTTCCTCTGAGGCGGTG
GAGGTGGACGAGATCAGCGGCCGGAGATTAATTGTTGAGTTCAAGGCCTT
CGGCTACTTCAAGCGCACGTGCCAGCTGGAGCTGCTCAAGAGTGGGGACT
GCGTGTTTTCTAAGGGGATGGTGGCCAAGGAGAAGGGCGCGTGGCGTGTC
GAGGTGAGCCGCCGACCGCTGCAGGACGCCACATCTTGATGTATTTTGTC
CATGTCGTATACATGCAAGGGTTGCCTTACTTGCTCCCGTGTGGCCATAC
CATATCCCCGGTTGATCCTTGCGTAAGGTCAATATTCCCAGAATGGTGTA
GACTGACGCCAGAATAAGGTGGGGGCGAGGACACGCCAACATACACATGC
ATCACATGCATCCCTCGTATTTTACATGATTTGATTTGATGACCCGTTGG
CGGAGTGGAGTGAGGTTCTTGACCTCTGTGTTGTATCGAGGGAGTGAACG
GCACATCCGTCGAACGTGGCGACACCAGTATGCATAGCACCGGACAGGTT
AGACAGGTCAAACAGGCCTTGCTGTTGATCGTTCGTGTTGTTGTTGATTC
TTTTGTTGATTATCTTGGCCCAAGAAAAAATCCCTTGAAAAATGCACGGT
TGGCGGAGACGATGTACTCAAGGATATTATTCTCATAGGCAAAAGCAGCG
AATGTGACTGCTGTTTGTTCTCGTGCGACAAGGATAAGGGTGAAAGCCCA
TCACGCTTGCCTCCTTTGCCTCTTTCGGGAAGCGGAGTCGCCCAGATGAA
TCATGGCGCACTGCATGACGAGATCAAGAGAACGAAACGAAAGCGGTGCA
GTCAAGGGGCGTGCTCGGTGTTGCCTGTTGATGATGTTAACTGTGGACTG
CCTGTCTTGCCTTGCATTTCATGAGTGTATCAGACATGATAAAGAAGAGG
ATCCCGGGGGTGGAGGGCCGTTAGTATCCTCATCCTTACTAATAACGGCA
TGGCATGTATGACGATGGTCGTGGTTTGTGGCCAGGTGACCTGGCGCCAG
GAAGAATGTTTCCGTACTACTGTACCCCGTGCTGATGAGGCGTCATGTGT
CCGTCGTTTATTGTGCGCATATATACGTAGTATGTATGCCCGCCGACCTC
CGACTGATATATTTTGGGGTGCAGTGGGTGCGTAATGCATGTGACGTGCG
TGCGCCAGACAACCCAGCCTGTTCGTATGTGGAACATTATTAAAGCAGAC
AAGCAGAGAATTTCCCTGTTGAAGAGGGTTTGGTTAAATATATGATCTGC
ATGTGCATACTAAATGATGGCGTCTGTGTGACGTAGCACTCCGTCTTGTG
AGAAGAGGAGAGCTATCAAGAAGCAGCCCACAGGATGTACTGAAACTGAA
TCGCGACGACGTGTTGGCAATTCTGCGTGAGACCCAGGCTGTGACTCGCT
CTCTCTCCCCGTCTCTCTTTCTATTTGACTAGTGTTAATACCGCGCAGTG
ATTGTAGTCTGTGGGAATCTATTTGTTAGCGTGGCATGCCAATCGCGAGA
GTTTCTCGCCGCTTGGAACTGCTAGTAAGTACTTCTACGAGCTTGATTTT
CTGGGTTGTTTTCTTGGCCGTACAACCGTAGACTAGGCTGGCTTACTACC
AGAATTTCACCGACTGTCAGCTTGAACAGGGCTGTACGAAGAAGTAGGTA
AAGCTTGTGTTCATGAGCACATCGCCACCATTTCGATCCCCTGTTACAGC
AGTATCTATTTGTTCATCCACCGTCGCTACATATTTCGCCGCAAACCAAC
ACCCCCTTGCACGACGACGATGTGTCAACATGCACTTAACGCCTGTCTAT
GACAGGAGGAGGATGGTACGGACTACCTGCAGTTCAGCTGTCCGTTAACG
GAGATGTACGGTGTGATGTTCGACGTACCAAGCGCCCTGCTGTTCTGGAG
GGTACCGCTACGCAAGGGTGCCGACGGCAGCGTCGTGCTTCAGGGGGGTC
AGATCATCAGCGAGAAGAATAGCTTGTGAGTTTCTTTCGTGTGTTGTCAG
ATCATCACACCGAAGTCGTGCGTTGTCAGATCATAACAACGAAGGAATGT
AGCTTGTGAGTTTCTTTCATGCGCAATTGTAATTGTTGTCATCACAAAGA
AGGAAGACTGCTGTGCGTTCCTTGTATTTGAGTATTTTGTAGCGTGTTAG
CAGTGGGTTGAAGGGAAGGGAAGCGAAGGGGCGTGGAGGGGAGGGGTGTG
GCAGGGTATGATGGTATACACTATATAGCGCATAGGGTGGGCTCGATCAT
ACGCGAGCGGTCCGTGAGACCGGAGAATGAGCACATTTAGCACATTTAGC
AGGAGATATGATGGATGGATGATCGAGAAGAAGGCATTGGTCGGCTGGCC
AACACTGTAGCTCGTCCGTGTGGGGAAACGATACAGTAGTAGATAGATTG
GTTGCTGCCGGGTCTGCAAGCCTTCTAAGACGAAAACGAAGATTAAGGTT
AGGCTGCTGTCGTACTATGTCACCATTGGAACATAATCAGAACCCAGCCG
TCAATTTGGGCTGATCCCCCCCCGTCCACTGCATGCACACTGCTCTACCT
TACTCTGCTAATGCACAATGTTGTTGTTTTTTTCGGTGTAACAGGTTCGG
TTTGAAGACGACTTTCATCGATGAAGGCTCGTTCAAGGCGCGAGTCTTGG
CAAACGACGAAGAGTTCCCAGTCCCCGATAAGATAGATTTCAGCTCCGTC
CCGATTCCGGTGAGTATCGAATTGTTGGCCTTGTGGCGGCTGTCGTTGGG
GCCTGTTGAACGATTGAAGGTGCTTATTTTTGTTCTTTCTCGGCTTTCCT
TACATTCCATTCCAACTAAGCATTTAAAGAAGTTGGTTCTGTCCGCGTGG
GACTTCGGACAGAGTGACGGGGGGGGGGGTGTACTCAGTATCATGCATGC
CGTAGTCGTTAGACCATAGACCTCGCGGGGTGTTGATGTGATGTGTTCTG
TTTGGAATGCTTGATCGCACCGCGCGTGTCGTGCTTCTCCTCGTCGTTTG
TGTGCCCGTCTACGTCATCCTCCCCTGGCCCCCTAGTTCCGATCCCTACA
AGTACCGTACCGTATTGGTGATCACGTACAATATGGACAGCTCCTTTGAT
TTCAGTTGATATCCCCGACAAGACAAGCGTGTCACTTACTGCTGTACCAT
CGCTCCACGCACCATCGCCAACACAATCCCCTGACCCCTCCCTCTCAATC
CATCCAGGCTGGGCTGGCGAAGCTCAAGAAGAAGGGAACGGGAGGGATTA
CGGAGCAAGTTCCGGAGCCCCCTCTGCCAGGGTCTCGCTAACAGCTAACA
GCTAACAACAACCGGCGACAACAACTGGCACAAGACTCAAGACTGTGGTC
GACGGAGGGGTACGGACGGCAGCCTTGGGAGCTAGGAACGGTGGTGGCGA
CTGACTGAGTGAAAGGCCTGGTCTCGTTGGTGCTCGGCCTGTTCGCAAGT
GTGTCGGTTTCGTATGTTTCGTATGTTTCTCCCGAATGGTAGCATATGAC
GTTGATGGGGTAGTTAACGGAGCCATGAATTCGAGAATGGTTCGCTTGCT
TCGCGGTCGTCTTTTCGGGGTCCCAGTGTGCTGACGGGATGATGATTAGG
TCACACACGGTTTTTGTTCAAACCTTCTTGCTTACGTCCTTGGAGCACCC
ACTGCTTGAGGCGGGAAGGACGAAAATTTCTTGCTGGTTTGTTTTGATCT
TGATCAGCTTGTAGTCGGGCGAAAGTGCGCTTCAAATGGAGTGGGTCACC
ATATGCATAGCATATGAAATTCGCTTCCGCTTGGCAGCTGCTGTCTTGAT
CCCTGGGGCTGTCAG back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig104:3095..9209- >mRNA_Ecto-sp8_S_contig104.643.1 ID=mRNA_Ecto-sp8_S_contig104.643.1|Name=mRNA_Ecto-sp8_S_contig104.643.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp8_S_contig104:3095..9209- (Ectocarpus species8 EcLAC_412) ATGCGTGCCTCCGGCTGGAAAGGATGGATGCTCTTGGGGCTTGGCGCATG TGGAGAGGCCTTCGTAGTTCGGCCGCTCGTCCACCTCCCAACTAGCAGTG GGTCGGCGTCAACAACGACCACCATCACAACACCAGGCGGAGCAGTACCG GCGCGCTGCTCGCGAGGGCCGCAGCAGCAGAAGCAGCGTCGGGATCGTGC CGCGACGGCATTGGCATCGTCGCAGCCAAGCATGATGCAGGACGAGAGGC AGCAGCAGGGGTTTGCGGCGAAGGTGGCGCCGAAGCCTGGCGACGCTAGT GAGGAGGAGGCTAAGAAGGCAGCAGCGGTCGTATTCGTACCGGAGGTGGC GAACAACCAGCTTTCCTCTGAGGCGGTGGAGGTGGACGAGATCAGCGGCC GGAGATTAATTGTTGAGTTCAAGGCCTTCGGCTACTTCAAGCGCACGTGC CAGCTGGAGCTGCTCAAGAGTGGGGACTGCGTGTTTTCTAAGGGGATGGT GGCCAAGGAGAAGGGCGCGTGGCGTGTCGAGGAGGAGGATGGTACGGACT ACCTGCAGTTCAGCTGTCCGTTAACGGAGATGTACGGTGTGATGTTCGAC GTACCAAGCGCCCTGCTGTTCTGGAGGGTACCGCTACGCAAGGGTGCCGA CGGCAGCGTCGTGCTTCAGGGGGGTCAGATCATCAGCGAGAAGAATAGCT TGTTCGGTTTGAAGACGACTTTCATCGATGAAGGCTCGTTCAAGGCGCGA GTCTTGGCAAACGACGAAGAGTTCCCAGTCCCCGATAAGATAGATTTCAG CTCCGTCCCGATTCCGGCTGGGCTGGCGAAGCTCAAGAAGAAGGGAACGG GAGGGATTACGGAGCAAGTTCCGGAGCCCCCTCTGCCAGGGTCTCGCTAA back to top
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