mRNA_Ecto-sp8_S_contig103890.632.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103890.632.1
Unique NamemRNA_Ecto-sp8_S_contig103890.632.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: D7G0E9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0E9_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.780e-31
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVE 195
            GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEK   E
Sbjct:  533 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKAAKE 597
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BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: A0A835ZI00_9STRA (Branchpoint-bridging protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI00_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.650e-23
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARR-GPMAIDEDDELHVYVSGETEEAVEKVRVE 195
            GLIIGPRGNTQKRMERE+ CKIAIRG+GSVKEGARR G  ++DE+D+LHVYV G+TEE VEK   E
Sbjct:  365 GLIIGPRGNTQKRMERESGCKIAIRGRGSVKEGARRTGVKSVDEEDDLHVYVQGDTEEQVEKAAAE 430
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BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: W2RB66_PHYPN (Branchpoint-bridging protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RB66_PHYPN)

HSP 1 Score: 91.7 bits (226), Expect = 3.350e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVEALML 207
            GLIIGPRGNTQKRMERET+CKIAIRGKGSVKEG++   M  DE+D+LHV ++G+ EE ++K   E   L
Sbjct:  280 GLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNADENDDLHVLITGDREEDLDKAAKEVQSL 348
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: A0A484DSZ3_BRELC (Branchpoint-bridging protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ3_BRELC)

HSP 1 Score: 92.0 bits (227), Expect = 3.910e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVEALML 207
            GLIIGPRGNTQKRMERET+CKIAIRGKGSVKEG++   M  DE+D+LHV ++G+ E+ +E+   E   L
Sbjct:  282 GLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMIADENDDLHVLITGDREDEIERAAKEVQSL 350
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BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: W2LI46_PHYPR (Branchpoint-bridging protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LI46_PHYPR)

HSP 1 Score: 91.7 bits (226), Expect = 5.190e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVEALML 207
            GLIIGPRGNTQKRMERET+CKIAIRGKGSVKEG++   M  DE+D+LHV ++G+ EE ++K   E   L
Sbjct:  280 GLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNADENDDLHVLITGDREEDLDKAAKEVQSL 348
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: D0N463_PHYIT (Branchpoint-bridging protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N463_PHYIT)

HSP 1 Score: 91.7 bits (226), Expect = 5.340e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVEALML 207
            GLIIGPRGNTQKRMERET+CKIAIRGKGSVKEG++   M  DE+D+LHV ++G+ EE ++K   E   L
Sbjct:  281 GLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNADENDDLHVLITGDREEDLDKAAKEVQSL 349
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: W2RDP1_PHYPN (Branchpoint-bridging protein n=22 Tax=Phytophthora TaxID=4783 RepID=W2RDP1_PHYPN)

HSP 1 Score: 91.7 bits (226), Expect = 5.340e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVEALML 207
            GLIIGPRGNTQKRMERET+CKIAIRGKGSVKEG++   M  DE+D+LHV ++G+ EE ++K   E   L
Sbjct:  280 GLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMNADENDDLHVLITGDREEDLDKAAKEVQSL 348
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BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: A0A0P1B7W4_PLAHL (Branchpoint-bridging protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7W4_PLAHL)

HSP 1 Score: 91.3 bits (225), Expect = 7.310e-20
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEKVRVEALML 207
            GLIIGPRGNTQKRMERET+CKIAIRGKGSVKEG++   M  DE+D+LHV + G+ E+ +E+   E   L
Sbjct:  280 GLIIGPRGNTQKRMERETNCKIAIRGKGSVKEGSKGKKMLADENDDLHVLIMGDREDEIERAAKEVQSL 348
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: A0A7S2B291_9STRA (Branchpoint-bridging protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B291_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.910e-20
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVYVSGETEEAVEK 183
            GLIIGPRGNTQK+ME+E+ CKI+IRGKGSVK GAR GP   DE+DELHV ++G+T+E  ++
Sbjct:   36 GLIIGPRGNTQKKMEKESGCKISIRGKGSVKSGAR-GPAKGDEEDELHVLITGDTDEQADR 95
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Match: D8TRS8_VOLCA (Branchpoint-bridging protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRS8_VOLCA)

HSP 1 Score: 85.1 bits (209), Expect = 1.360e-19
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEG-ARRGPMAIDE---DDELHVYVSGETEEAVEK 183
            GLIIGPRGNTQKRME+ET+ KIAIRGKGS+KEG  RR PM   E   DDELHV ++G+T+E V+K
Sbjct:   39 GLIIGPRGNTQKRMEKETNTKIAIRGKGSIKEGRTRRDPMGRPEPGEDDELHVLITGDTDEDVDK 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103890.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0E9_ECTSI1.780e-3195.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZI00_9STRA3.650e-2375.76Branchpoint-bridging protein (Fragment) n=1 Tax=Tr... [more]
W2RB66_PHYPN3.350e-2065.22Branchpoint-bridging protein n=8 Tax=Phytophthora ... [more]
A0A484DSZ3_BRELC3.910e-2063.77Branchpoint-bridging protein n=1 Tax=Bremia lactuc... [more]
W2LI46_PHYPR5.190e-2065.22Branchpoint-bridging protein n=6 Tax=Phytophthora ... [more]
D0N463_PHYIT5.340e-2065.22Branchpoint-bridging protein n=2 Tax=Phytophthora ... [more]
W2RDP1_PHYPN5.340e-2065.22Branchpoint-bridging protein n=22 Tax=Phytophthora... [more]
A0A0P1B7W4_PLAHL7.310e-2063.77Branchpoint-bridging protein n=1 Tax=Plasmopara ha... [more]
A0A7S2B291_9STRA7.910e-2067.21Branchpoint-bridging protein (Fragment) n=1 Tax=Fl... [more]
D8TRS8_VOLCA1.360e-1969.23Branchpoint-bridging protein n=1 Tax=Volvox carter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103890contigEcto-sp8_S_contig103890:43..252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.2
Seed ortholog evalue4.7e-26
Seed eggNOG ortholog2880.D7G0E9
Preferred nameSF1
Model size210
KEGG koko:K13095,ko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000389,GO:0000398,GO:0001101,GO:0003006,GO:0003674,GO:0003676,GO:0003712,GO:0003714,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007275,GO:0007530,GO:0007548,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0008406,GO:0008584,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030238,GO:0030575,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033327,GO:0033993,GO:0034622,GO:0034641,GO:0036002,GO:0042127,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045131,GO:0045137,GO:0045292,GO:0045934,GO:0046483,GO:0046546,GO:0046661,GO:0046890,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048660,GO:0048662,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0140110,GO:1901360,GO:1901363,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2001141
Exons1
EggNOG free text desc.pre-mRNA branch point binding
EggNOG OGsCOG5176@1,KOG0119@2759
Cds size210
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143138.1268277-CDS-Ecto-sp8_S_contig103890:42..2521681143138.1268277-CDS-Ecto-sp8_S_contig103890:42..252Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103890 43..252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103890.632.1prot_Ecto-sp8_S_contig103890.632.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103890 43..252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103890.632.1

>prot_Ecto-sp8_S_contig103890.632.1 ID=prot_Ecto-sp8_S_contig103890.632.1|Name=mRNA_Ecto-sp8_S_contig103890.632.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=70bp
GLIIGPRGNTQKRMERETDCKIAIRGKGSVKEGARRGPMAIDEDDELHVY
VSGETEEAVEKVRVEALMLV
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mRNA from alignment at Ecto-sp8_S_contig103890:43..252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103890.632.1 ID=mRNA_Ecto-sp8_S_contig103890.632.1|Name=mRNA_Ecto-sp8_S_contig103890.632.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103890:43..252+ (Ectocarpus species8 EcLAC_412)
GGTCTCATCATCGGACCTCGCGGCAACACCCAGAAACGCATGGAGCGAGA
AACGGACTGCAAGATCGCTATCCGAGGCAAGGGTTCCGTCAAGGAGGGGG
CTCGCCGCGGTCCAATGGCCATCGACGAGGATGACGAGCTGCACGTCTAC
GTCTCGGGCGAAACCGAAGAGGCCGTCGAGAAGGTACGTGTGGAGGCGTT
GATGCTTGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103890:43..252+

>mRNA_Ecto-sp8_S_contig103890.632.1 ID=mRNA_Ecto-sp8_S_contig103890.632.1|Name=mRNA_Ecto-sp8_S_contig103890.632.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103890:43..252+ (Ectocarpus species8 EcLAC_412)
GGTCTCATCATCGGACCTCGCGGCAACACCCAGAAACGCATGGAGCGAGA
AACGGACTGCAAGATCGCTATCCGAGGCAAGGGTTCCGTCAAGGAGGGGG
CTCGCCGCGGTCCAATGGCCATCGACGAGGATGACGAGCTGCACGTCTAC
GTCTCGGGCGAAACCGAAGAGGCCGTCGAGAAGGTACGTGTGGAGGCGTT
GATGCTTGTA
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