mRNA_Ecto-sp8_S_contig10388.630.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10388.630.1
Unique NamemRNA_Ecto-sp8_S_contig10388.630.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: D7FSY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY0_ECTSI)

HSP 1 Score: 480 bits (1236), Expect = 1.750e-160
Identity = 230/234 (98.29%), Postives = 231/234 (98.72%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVTGTQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            DRTVKFWDTRTSTPAAVVTLCERAYSMDT+GAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPA TYGNTKLSFAFKCHRV G QSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK
Sbjct:  133 DRTVKFWDTRTSTPAAVVTLCERAYSMDTKGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPATTYGNTKLSFAFKCHRVAGAQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 366          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A835ZCU3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU3_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.060e-72
Identity = 131/238 (55.04%), Postives = 160/238 (67.23%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVT----GTQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            D+T++FWD +   P   +TL ER Y ++ R   +VV TADRK  VYNLG+        +++ +S L+YQTRC +IFPDQ G+AVGSIEGRV IEYFSE   +    +G   A     TK  FAFKCHR T     +Q+ V+S+NSIAFH YGTFATAGSDG F+FWDKDSRQRLK +  KQ  TIS   FSPDG L+ YA+SYDWSQGV  A P   + I +H V DDEIKPR K +K
Sbjct:  139 DKTIRFWDMKQPNPVHTMTLSERVYDLEVRDNWLVVCTADRKNSVYNLGA----NCKLESVAESTLKYQTRCAAIFPDQTGYAVGSIEGRVAIEYFSELPNE----TGVPRALPASQTKRGFAFKCHRETLPQNKSQTGVFSINSIAFHPYGTFATAGSDGTFNFWDKDSRQRLKQFP-KQATTISTAAFSPDGSLYAYAVSYDWSQGVGGAQPGLPHEIKLHVVTDDEIKPRDKPRK 367          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A8J2WTP8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTP8_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.720e-63
Identity = 117/238 (49.16%), Postives = 150/238 (63.03%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVTGTQSS-------VYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPK 1845
            D++V+ WD RT  P A + L ER Y+MD R  ++VV TA+RK+C+Y+L S   N   P  + DSPLR+QTRCV+ FPD++GFA+GSIEGRVGI +   +                 N   +FAFKCHR T    +       +Y+VNSIAFH  GTFATAGSDG +++WDKDS+QRL  +  K   TIS   FSP GGL+ YA+SYDWS+G E  +PQ  N I +H V  DEI  R K
Sbjct:  139 DKSVRAWDCRTPNPVATIPLPERCYAMDVRHPLLVVGTAERKVCIYDLSS--ANWQQPYRVEDSPLRHQTRCVAAFPDREGFAIGSIEGRVGIHHVDPK-----------------NAHRNFAFKCHRETQDARAGQTGLCNIYAVNSIAFHHLGTFATAGSDGVYNYWDKDSKQRLMQFK-KAAQTISTACFSPSGGLYAYALSYDWSRGSESHSPQIPNQIMIHRVQKDEITQRNK 356          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A4S8VY86_AURPU (WD40 repeat-like protein n=1 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S8VY86_AURPU)

HSP 1 Score: 223 bits (567), Expect = 7.400e-62
Identity = 120/240 (50.00%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPA-PQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRV----TGTQSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            D+T+K+WD R  TPAA V   ER Y+MDTR  ++VVATADR + ++NL     N P+ P     SPL++QTR +S F D  GFA+GSIEGR  I+Y  E+ A                    F+FKCHR     T  QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct:  150 DKTIKYWDLRQQTPAASVQCKERVYAMDTRDQLLVVATADRWVEIFNL-----NQPSQPYKQIQSPLKWQTRTISCFADATGFAIGSIEGRCAIQYVEEKDASSN-----------------FSFKCHRQNAPNTRDQSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 366          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A074YVJ3_AURSE (Uncharacterized protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074YVJ3_AURSE)

HSP 1 Score: 221 bits (564), Expect = 1.480e-61
Identity = 117/239 (48.95%), Postives = 152/239 (63.60%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVTGT----QSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            D+T+K+WD R  TPAA V   +R Y+MDTR  ++VVATADR + ++NL     N    Q    SPL++QTR +S F D  GFA+GSIEGR  I+Y  E+                 ++  +F+FKCHR T      QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG +  NPQ  N + +H++A DE KPRP  KK
Sbjct:  140 DKTIKYWDLRQQTPAATVQCKDRVYAMDTRDQLLVVATADRWVEIFNLAQ--PNSAYKQIQ--SPLKWQTRTISCFADATGFAIGSIEGRCAIQYVEEK-----------------DSSSNFSFKCHRQTAPNTRDQSNVYSVNSISFHPIHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGSVFAYAVSYDWHQGYQQNNPQYPNKVMLHSIAPDECKPRPNAKK 356          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A7S3K4J4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4J4_9STRA)

HSP 1 Score: 221 bits (562), Expect = 4.580e-61
Identity = 115/239 (48.12%), Postives = 151/239 (63.18%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVTG-------TQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKD 1848
            D  ++ WD RT TPAA +TL ER Y+M     +MVV TA+RKI +Y+L    +N   P    +SPLR+QTRC++ FPD+ GFA+GSIEGRV I + + + A +                  FAFKCHR T        T  ++Y+VNSI FHK+GTFATAGSDG ++FWDKDS+QRL A+     NTI    FSP G L+ YA+SYDWS+G E+ NPQ  N I +H V ++EI+ R K+
Sbjct:  149 DNAIRCWDARTPTPAATITLPERCYAMAVNHPLMVVGTAERKILMYDLSR--SNWQQPMRFEESPLRHQTRCIATFPDRDGFAIGSIEGRVAIHHVNIKEAGRN-----------------FAFKCHRDTQENRVGQPTVCNIYAVNSIVFHKFGTFATAGSDGVYNFWDKDSKQRLMAFKAAP-NTIPCASFSPIGNLYAYALSYDWSRGSENYNPQTPNYIMLHHVKEEEIRQRKKN 367          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A4V4KBG8_AURPU (WD40 repeat-like protein n=22 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4V4KBG8_AURPU)

HSP 1 Score: 223 bits (567), Expect = 1.170e-60
Identity = 120/240 (50.00%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPA-PQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRV----TGTQSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            D+T+K+WD R  TPAA V   ER Y+MDTR  ++VVATADR + ++NL     N P+ P     SPL++QTR +S F D  GFA+GSIEGR  I+Y  E+ A                    F+FKCHR     T  QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct:  255 DKTIKYWDLRQQTPAASVQCKERVYAMDTRDQLLVVATADRWVEIFNL-----NQPSQPYKQIQSPLKWQTRTISCFADATGFAIGSIEGRCAIQYVEEKDASSN-----------------FSFKCHRQNAPNTRDQSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 471          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A4S9BKU6_AURPU (WD40 repeat-like protein n=9 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A4S9BKU6_AURPU)

HSP 1 Score: 223 bits (567), Expect = 1.850e-60
Identity = 120/240 (50.00%), Postives = 149/240 (62.08%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPA-PQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRV----TGTQSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            D+T+K+WD R  TPAA V   ER Y+MDTR  ++VVATADR + ++NL     N P+ P     SPL++QTR +S F D  GFA+GSIEGR  I+Y  E+ A                    F+FKCHR     T  QS+VYSVNSI+FH  +GTF+TAGSDG FHFWDKD++ RLK Y  + G +IS   FS DG +F YA+SYDW QG    NPQ  N + +H V  DE KPRP  KK
Sbjct:  274 DKTIKYWDLRQQTPAASVQCKERVYAMDTRDQLLVVATADRWVEIFNL-----NQPSQPYKQIQSPLKWQTRTISCFADATGFAIGSIEGRCAIQYVEEKDASSN-----------------FSFKCHRQNAPNTRDQSNVYSVNSISFHPVHGTFSTAGSDGTFHFWDKDAKHRLKGYP-EVGGSISCTDFSHDGNIFAYAVSYDWHQGYSGNNPQYPNKVMLHPVIGDECKPRPNSKK 490          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: A0A7S4HJS6_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HJS6_9EUKA)

HSP 1 Score: 218 bits (554), Expect = 2.730e-60
Identity = 118/235 (50.21%), Postives = 151/235 (64.26%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVTGTQSSVYSVNSIAFHK-YGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPKDKK 1854
            DRTVK+WD +T  P+A + L ERA+ MD R  ++VVATADRKI V NL     N  A     DSPL+YQ+RCV+ FPDQQGF +GSIEGRV + +  E+                 +   +FAFKCHR       +Y+VN I FH  +GTFAT GSDG ++FWDKDSRQRLKA++ K    I V  F+ DG +F YA+SYDWS+G EH NP+ TN++ +H+V + EIK R   KK
Sbjct:  130 DRTVKYWDGKTPNPSATLQLPERAFCMDVRYPLLVVATADRKIIVVNLS----NPTAIFKAVDSPLKYQSRCVACFPDQQGFCLGSIEGRVAVHHVQER-----------------DVTKNFAFKCHREN---QDIYAVNCITFHPTFGTFATTGSDGTYNFWDKDSRQRLKAFN-KASMAIPVGAFNRDGTIFAYAVSYDWSKGSEHYNPR-TNHLLLHSVPEAEIKSRATQKK 338          
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Match: F0Y1R3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1R3_AURAN)

HSP 1 Score: 217 bits (553), Expect = 5.460e-60
Identity = 117/238 (49.16%), Postives = 145/238 (60.92%), Query Frame = 1
Query: 1153 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNGPAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQAASGYKPAPTYGNTKLSFAFKCHRVT-------GTQSSVYSVNSIAFHKYGTFATAGSDGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGVEHANPQATNNIFVHAVADDEIKPRPK 1845
            D+T+K WD R  TP A V L ER YSMD    +MVVATA+RK+CVY+L +   N   P  + DSPL++QTRCV  FPD++GFA+GSIEGRV I +   + A +                  FAFKCHR T        +  ++Y+VN IAFH  GTFATAGSDG F+FWDKDS+QRL A+  +    IS   FSP G L+ YA+SYDWS+G E   P   N I +H V  DEI  R K
Sbjct:  136 DKTIKCWDVRQPTPTASVQLPERCYSMDVAHPLMVVATAERKLCVYDLSN--ANWQRPYRVEDSPLKHQTRCVRCFPDREGFAIGSIEGRVAIHHVDAKDAHKN-----------------FAFKCHRDTQDGRAGQASTCNIYAVNDIAFHNLGTFATAGSDGVFNFWDKDSKQRLMAFK-RADRPISCAAFSPAGTLYAYALSYDWSRGSESHTPTDPNTIMLHKVQKDEITQRNK 353          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10388.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY0_ECTSI1.750e-16098.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCU3_9STRA1.060e-7255.04WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A8J2WTP8_9STRA1.720e-6349.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4S8VY86_AURPU7.400e-6250.00WD40 repeat-like protein n=1 Tax=Aureobasidium pul... [more]
A0A074YVJ3_AURSE1.480e-6148.95Uncharacterized protein n=1 Tax=Aureobasidium subg... [more]
A0A7S3K4J4_9STRA4.580e-6148.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A4V4KBG8_AURPU1.170e-6050.00WD40 repeat-like protein n=22 Tax=Aureobasidium pu... [more]
A0A4S9BKU6_AURPU1.850e-6050.00WD40 repeat-like protein n=9 Tax=Aureobasidium pul... [more]
A0A7S4HJS6_9EUKA2.730e-6050.21Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
F0Y1R3_AURAN5.460e-6049.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10388contigEcto-sp8_S_contig10388:564..4996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score484.6
Seed ortholog evalue3.8e-134
Seed eggNOG ortholog2880.D7FSY0
Preferred nameRAE1
Model size2498
KEGG koko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728
Exons5
EggNOG free text desc.transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGsKOG0647@1,KOG0647@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_006770.1
Cds size990
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10388.630.1prot_Ecto-sp8_S_contig10388.630.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10388 1205..4129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.9740784-UTR-Ecto-sp8_S_contig10388:563..12041681143137.9740784-UTR-Ecto-sp8_S_contig10388:563..1204Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10388 564..1204 -
1681143138.0418968-UTR-Ecto-sp8_S_contig10388:4129..49961681143138.0418968-UTR-Ecto-sp8_S_contig10388:4129..4996Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10388 4130..4996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.988398-CDS-Ecto-sp8_S_contig10388:1204..13281681143137.988398-CDS-Ecto-sp8_S_contig10388:1204..1328Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10388 1205..1328 -
1681143137.999016-CDS-Ecto-sp8_S_contig10388:1893..20841681143137.999016-CDS-Ecto-sp8_S_contig10388:1893..2084Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10388 1894..2084 -
1681143138.013511-CDS-Ecto-sp8_S_contig10388:2720..28981681143138.013511-CDS-Ecto-sp8_S_contig10388:2720..2898Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10388 2721..2898 -
1681143138.0232565-CDS-Ecto-sp8_S_contig10388:3232..33181681143138.0232565-CDS-Ecto-sp8_S_contig10388:3232..3318Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10388 3233..3318 -
1681143138.0322328-CDS-Ecto-sp8_S_contig10388:3718..41291681143138.0322328-CDS-Ecto-sp8_S_contig10388:3718..4129Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10388 3719..4129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10388.630.1

>prot_Ecto-sp8_S_contig10388.630.1 ID=prot_Ecto-sp8_S_contig10388.630.1|Name=mRNA_Ecto-sp8_S_contig10388.630.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=330bp
MPHRVHLHEPKRRRFILELLSRHDLSYKSFQTRCLSQLISNNQHFRRVHP
LLFLPKHTSLSLRTFMSIPGCTHVCMPLLYATAVCHCCMPLLYARDRTVK
FWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKICVYNLGSWTTNG
PAPQTMTDSPLRYQTRCVSIFPDQQGFAVGSIEGRVGIEYFSEQAAKQQA
ASGYKPAPTYGNTKLSFAFKCHRVTGTQSSVYSVNSIAFHKYGTFATAGS
DGNFHFWDKDSRQRLKAYDLKQGNTISVCKFSPDGGLFGYAMSYDWSQGV
EHANPQATNNIFVHAVADDEIKPRPKDKK*
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mRNA from alignment at Ecto-sp8_S_contig10388:564..4996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10388.630.1 ID=mRNA_Ecto-sp8_S_contig10388.630.1|Name=mRNA_Ecto-sp8_S_contig10388.630.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4433bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10388:564..4996- (Ectocarpus species8 EcLAC_412)
GTGTCTTGCAACAATCAATCGGTCTATGCTACTCTCTTTTCAGTTTTCAT TATGTGATGTCTCCCTGCCTTGTCGTGCGTATTGGCCCATTTGGCAGTCG GTGTTTTCTCGTCAGCTCCATGTGTCCGTGTCGTTGCATTCATGACCGTG GATGCTTTTCGTACAGCGGTAGGGTGGCGATCTGCTACGTTTTACCCATT TCCTTGTTTCTTTTGTGCTTTGTTTTGGTGCGTAGTATACCGTCCAGCAG CCCGCAGAGCTATGTGGTGTGGTTTTATTGCTGAAAGCATATCTCAAATC GTTGTGCGTGCTCACATCATGCTGCAGTCGCAAGTCCTCTCGGTGGTAGA TGGTGTTGTCATGTTGTCATGTTGTTACGGCCATAGTTCATTGTTAGTAT CTTTGAGCATGATGTATTTTGACAGCAGTGTTGGTGACGGCTGTACTGTA CTGCAGTCGTTTGGCCTCCCATGTCTTCTGAAGCGCGTATGTTACTATTT TATGTCCGGCATTCCTGCCATCTTCCGGAGAAAGTTGTATTGACATGCAT GGAAGGTGTTGTTGATATTTATTTTATTTATATTTATCATGTAAATGGTG TTGTGGCCGTTTCGTTTTTACGTCCGAAAATAGGATGGGGCGTTGTCGCA AACATGTGGCATGCAGCACTCATCTCTCAGACATGAGAAAACACACATGG CGAGGGGAGCGACCCTCCTCGAAAAGAAAGCGTCAGTTTCATCCGAACAT TCGAACCCCACGAATTTCGTTATGTGCCAACCGAAAATCAAACCATGTAG GCCAATCAGCACTGACTGACCAGCTGGTTTGATTTTGGTTGCTAAAGATG TCAGCAACGTTATCGTGATGCCTCACCGCGTGCACCTCCACGAACCGAAA CGCCGCCGCTTTATCTTGGAACTCCTTTCCAGACACGATTTATCGTACAA GTCCTTTCAAACACGGTGTCTCTCGCAACTCATTTCAAACAACCAACACT TTCGACGCGTGCACCCCTTGCTTTTCTTACCCAAGCACACCAGTCTCTCT CTTAGAACGTTCATGTCAATCCCTGGATGTACACATGTATGTATGCCACT GCTGTATGCCACTGCTGTATGCCACTGCTGTATGCCACTGCTGTATGCCA GGGATCGTACCGTCAAGTTTTGGGACACTCGAACGTCGACCCCCGCCGCC GTCGTGACTCTCTGCGAGAGGGCCTACTCCATGGACACGAGGGGAGCCAT GATGGTGGTCGCCACTGCTGACCGGAAGGTGGGTCTGTCGAAACAAATCA ACCGGAACCTGGTACAACCGTGTGTCATTCCATTTCAACTCGGTCTCTGG TGTCTCCAAGGTTGGTATCGATTTTCTCCCATTTTGTGTGTGTGTTTTTT TTTGCATTTTTTTGCGTTTTCTTTTTGCCGCTCGACTTATCTTTGACATA TTAAGCAGTGAAGCTTTCTGCGCCTGGGGAACGCCTGGAGAAAATCAGAA CATAGCCTGGCGTCTGCTCGACGCGGCGGATCTTATTGTACCGCATGTGC GGCACGATTTCATCTCGTTCGCCCTGGTACATAGCCGTCTAGCGCTCTCT CTCTCTCCACCGCACCTTACCTCGTTTCTGCTCCTTTTCCTCGGGGTGCC TACCACCCCATGGCACCAACCATGGCAGATTTGCGTGTACAACCTGGGGA GCTGGACCACCAACGGCCCGGCCCCGCAAACGATGACCGACTCCCCTCTA AGATATCAAACCAGGTTGGTTCGATGGCTCGGTGGTTCTATGGCGGTCGT TTTCTTTAGTCGTCGATTGTGGCGTCGTGGCTTCGACCCATGCACGCCCG GGCCCTTGCTGTCAAACTCTCACCAACACACAGCAAACAATGCATGACAT TATTTCGTTCCGGAGACCAACCGCCCCACTCGAACGGCCATGAAAACCAT CATCGCTTCAGAGTTGCAGGCGCGATATCGTTGTGTTGTGTTGACCGTAA GACGTCGATACACTCATCGGCTCGGGTGGTGGTGACCCCAAACAAAACGT TAATGCTGCATTTTTGTTTTTTTTTGCCGTTTTCCGGGCGCGATTCAGGT GCGTGTCCATCTTCCCAGACCAGCAGGGGTTCGCCGTAGGCTCCATCGAG GGGCGAGTGGGCATCGAGTACTTCAGCGAGCAGGCTGCCAAGCAGCAAGC GGCTTCGGGCTACAAGCCTGCCCCCACCTACGGGAACACCAAGCTCAGCT TCGCCTTCAAGTGCCACCGAGTCACGGTACGATGAGATGGAACGAGGAAA GCGAGAGGCGGGTTCTTGCTGTATGCCACACGTGTCCGACCTCTCTGCAT TATCTAGCGCGATCCTCTATGGGCATCCGTCTACGGGGAATCGCAGAGAG TAGGACAGGACAATGTTTGGTTGTTAAAATGGGTGTCCGCTGGTTGTATC CCGCTCTTCTAACGTGTTGAGAGTGTGGACAGGGACGATTATTTTTCTCA CTATACCGTAGTAGCTCCCGGCCGCTGCGTCTTGCGCGTTTGTCATTTGC CGCTCGAGATATCCTGCGTGTGTCATAGCAGCGCTTTGAGCGCAACCAGC AACGACAGCCATGTTTAGGTTTGTGTGCTGGTGTCTGAGTGCTTGTCGGA TGGTACACACCGCTTCCCCCCAAAATCGTTTGACTTTAGCTGTTGTGAAC CGGTCTAATACCACCTCTTCATACCATCTTCCACTTGTCGCGCTATTATT CGATTTGTTCTCTCTCCGCGTGCAAACCTTCTGTTTTTGTTTCAAGCCGC CTCCTCTGTTACCGAACAGTCTCCCCGTGAGGCGCGTGACCCTTGAAGCC TTGCTTACCAGCCGCCTGTGTGTCCCTCTTCTATCGTGTGACGCGTGATG TTGCTGCGACAGGGCACGCAATCGTCGGTGTACTCGGTGAACTCGATCGC CTTCCACAAGTACGGCACCTTCGCCACCGCCGGCTCCGATGGGAACTTCC ACTTCTGGGACAAGGACTCGAGGCAGCGCCTCAAGGCTTACGACCTCAAG CAGGGGAACACCATCTCTGTGTGCAAGTTCAGTCCTGACGGCGGTCTATT TGGGTAAGGGAGAAAGAATGCGTGTTTCTTTGTATTTTTTAGGCGTGGGT TGACTCCACCAACGGCGTCGTGATTTCACAACGTCAGAGCCACTGTCGAT TCCACGATTGTACGTATTCAAAAAATAGACGATTTTTGTTTTCTCATTGT GGGAGGCGTGGGTTGACTCTGCCAATGTCATGATTTCACACCGACAGTAG CCACTGTCAATTCCATGATATACCTTGTTCAAGAAGTGGACGAACTGTCA GTCTAGTCTCCAAATAGCCTGGGTCAATATCCCCGCTGCTGCTGCTGCTG CTGCCGCCGCCGTTTTGTTAGTGGATGCAACCGCTGCTCTATGTACTTTG GTAGATGTGACAGGCAGGCAGCGATGGACCACAGCACAACGCGACAAGTT TTGGTATCTGTATTTGTTCTGGGTCGCTGGTGTAAATATATCGGATGGTG CGGTATGCATTCCGGTGTATAGCCCCAAGCTCCTAACCTCGCCAAACCGC CCCCCTCCTTTTGGTCGATCTAACCAACCCTCTTGTTCTCTGTCGTCCGG GGAACTTCATCGGAAAAGGTACGCGATGAGCTACGACTGGTCCCAGGGTG TGGAGCACGCCAACCCCCAGGCGACGAACAACATCTTCGTGCACGCGGTC GCGGACGACGAGATTAAGCCCAGACCAAAGGACAAGAAGTAGTTAATCCT GATTGATTTGTGATGTGGAGCTGGTGCTGTAAACTTGTTCTTGTTATTGT TGTTGCATTATATGTAGCCGACTTTGGCCGAAGCGTTCGCGTCCGTTAGT AGTCTGTTTCTTGAAAAAGTTTTATTTTTTTTGTGTCTCGAGTGTTTAAG AAAATTTCCTCGAAGAAACCCGTTGTGGCACATCAAGTTTTTCGGCTTGT CGCAGGGAAGGTAGGAGAGACAACGACGCGGTGGATGCCTTGTCGGGAGC TTGTTCTGCATCCCTTCCAGTGTATGAAACCATGCATGCACGATTGTGCT GCAGCAACCGTTGTGTGACACGTTGCTTTTCTCATATGCTACGTATTGCG GAGTGTTGAGGAAGACGGTGGAGGCACTAGAATTTTTCTCGTTGCTGAAA CCATCGCGCCTGCTGCGGGTCGCACGCAAAGTGTACAAAGAGAAGCCTTC CTTTGACACTGACGAAACTGCTGGAAGGGCGATCGGTGCATGGGACAACG CTACGTTTTGCCGCAGTCGGGGGCTTAGTGTCAACCCGGAAGTCCATCGT GTTTCTGTTTACATGGAGAGGCTGAATGATCTTGGGGCGGCAACCGCTGC TACTTTACTCCCAACTTGTTCTCGCGCGTTGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10388:564..4996-

>mRNA_Ecto-sp8_S_contig10388.630.1 ID=mRNA_Ecto-sp8_S_contig10388.630.1|Name=mRNA_Ecto-sp8_S_contig10388.630.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10388:564..4996- (Ectocarpus species8 EcLAC_412)
ATGCCTCACCGCGTGCACCTCCACGAACCGAAACGCCGCCGCTTTATCTT
GGAACTCCTTTCCAGACACGATTTATCGTACAAGTCCTTTCAAACACGGT
GTCTCTCGCAACTCATTTCAAACAACCAACACTTTCGACGCGTGCACCCC
TTGCTTTTCTTACCCAAGCACACCAGTCTCTCTCTTAGAACGTTCATGTC
AATCCCTGGATGTACACATGTATGTATGCCACTGCTGTATGCCACTGCTG
TATGCCACTGCTGTATGCCACTGCTGTATGCCAGGGATCGTACCGTCAAG
TTTTGGGACACTCGAACGTCGACCCCCGCCGCCGTCGTGACTCTCTGCGA
GAGGGCCTACTCCATGGACACGAGGGGAGCCATGATGGTGGTCGCCACTG
CTGACCGGAAGATTTGCGTGTACAACCTGGGGAGCTGGACCACCAACGGC
CCGGCCCCGCAAACGATGACCGACTCCCCTCTAAGATATCAAACCAGGTG
CGTGTCCATCTTCCCAGACCAGCAGGGGTTCGCCGTAGGCTCCATCGAGG
GGCGAGTGGGCATCGAGTACTTCAGCGAGCAGGCTGCCAAGCAGCAAGCG
GCTTCGGGCTACAAGCCTGCCCCCACCTACGGGAACACCAAGCTCAGCTT
CGCCTTCAAGTGCCACCGAGTCACGGGCACGCAATCGTCGGTGTACTCGG
TGAACTCGATCGCCTTCCACAAGTACGGCACCTTCGCCACCGCCGGCTCC
GATGGGAACTTCCACTTCTGGGACAAGGACTCGAGGCAGCGCCTCAAGGC
TTACGACCTCAAGCAGGGGAACACCATCTCTGTGTGCAAGTTCAGTCCTG
ACGGCGGTCTATTTGGGTACGCGATGAGCTACGACTGGTCCCAGGGTGTG
GAGCACGCCAACCCCCAGGCGACGAACAACATCTTCGTGCACGCGGTCGC
GGACGACGAGATTAAGCCCAGACCAAAGGACAAGAAGTAG
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