mRNA_Ecto-sp8_S_contig103869.628.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103869.628.1
Unique NamemRNA_Ecto-sp8_S_contig103869.628.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: UPI000C76845E (transmembrane protein 19-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76845E)

HSP 1 Score: 216 bits (550), Expect = 2.700e-67
Identity = 103/150 (68.67%), Postives = 128/150 (85.33%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGK 450
            DLPVDFRH YRASWLG+ VLGA+SCCNGDTWASELGSVL++GDP+LIT+ ++VPRGTNGG++  GLL S  GGLVIG AY++G+I ++   D   AP+Q  +ILVGG+GGLLGS++DSL+GASLQFSG D KTG++VEVAREGV  +SG+
Sbjct:  152 DLPVDFRHSYRASWLGIGVLGALSCCNGDTWASELGSVLSRGDPWLITSLRRVPRGTNGGISIPGLLLSFVGGLVIGVAYWLGVICTSLGGDLARAPDQWKIILVGGIGGLLGSIIDSLLGASLQFSGIDEKTGRVVEVAREGVTKVSGQ 301          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: UPI001E67653D (transmembrane protein 19-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E67653D)

HSP 1 Score: 212 bits (539), Expect = 1.810e-65
Identity = 100/172 (58.14%), Postives = 138/172 (80.23%), Query Frame = 1
Query:    7 PVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            P+D  + YR SWL +A+LGA+SCCNGDTWASE+G+VL+ GDP LIT+ + VPRGTNGG+T +GL+ S+ GGLV+G  +++ ++M  +S     AP Q  +I VG +GGL+GSL+DS++GA++QFSG D++ GKIVE  +EGVIPISG  +LDNH+VNL+SS+LTAL LP++A
Sbjct:  146 PIDLVYNYRCSWLSLAILGALSCCNGDTWASEIGTVLSTGDPVLITSLRSVPRGTNGGITFIGLVVSLLGGLVVGIGHYLTLLMCVSSPVMISAPPQWPIIFVGAVGGLMGSLIDSILGATMQFSGMDSE-GKIVERPKEGVIPISGSYILDNHAVNLISSLLTALFLPRVA 316          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: UPI000F67A8EA (transmembrane protein 19-like isoform X2 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F67A8EA)

HSP 1 Score: 206 bits (524), Expect = 5.290e-64
Identity = 101/172 (58.72%), Postives = 137/172 (79.65%), Query Frame = 1
Query:    7 PVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            PVD  ++YR SWL +A+LGA++CCNGDTWASELG+V++ G+P LIT+ Q VPRGTNG V+  G++ S+ GGLV+G  +++ ++M  +S     AP Q  +I+VG +GGLLGSL+DS+IGA++QFSG D+  GKIVE   +GVIPISG  +LDNH+VNL+SS+LTALLLP+IA
Sbjct:   84 PVDLVYKYRCSWLSIAILGALACCNGDTWASELGAVMSSGEPVLITSLQPVPRGTNGAVSTSGIVMSLLGGLVVGIGHYLTLLMFVSSPVMISAPAQWPIIIVGAVGGLLGSLIDSVIGATMQFSGMDSN-GKIVERPGDGVIPISGSYILDNHAVNLISSLLTALLLPRIA 254          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A7R9PJE0_TIMGE (Transmembrane protein 19 n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9PJE0_TIMGE)

HSP 1 Score: 206 bits (524), Expect = 4.680e-63
Identity = 101/174 (58.05%), Postives = 128/174 (73.56%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            + P+DF   YR+SWLG+ +LGA +CCNGDTWASELGSV+   DPFLITTFQ+VPRGTNG VTPVGL+ S  GG V+G +Y++ ++ S       ++P Q  +++ G  GG  GSLLDSL+GA+LQ+SG + KTG IV     GV  ISG  VLDNHSVNL+SSI T LLLP++A
Sbjct:  154 ERPIDFTRDYRSSWLGIGILGAFACCNGDTWASELGSVIGNKDPFLITTFQRVPRGTNGAVTPVGLVLSAVGGAVVGLSYYLVVLYSVDPHILSLSPPQWPLVVAGAFGGFTGSLLDSLLGATLQYSGVNEKTGCIVGCPGRGVRHISGSWVLDNHSVNLISSIATGLLLPRLA 327          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A3R7MF35_PENVA (Transmembrane protein 19 n=8 Tax=Penaeus TaxID=133894 RepID=A0A3R7MF35_PENVA)

HSP 1 Score: 203 bits (516), Expect = 9.730e-63
Identity = 100/175 (57.14%), Postives = 136/175 (77.71%), Query Frame = 1
Query:    7 PVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDA---KTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            PVD  ++YR SWL +A+LGA++CCNGDTWASELG+V++ G+P LIT+ Q VPRGTNG V+  G++ S+ GGLV+G  +++ ++M  +S     AP Q  +I+VG +GGLLGSL+DS+IGA++QFSG +      GKIVE   +GVIPISG  +LDNH+VNL+SS+LTALLLP+IA
Sbjct:   84 PVDLVYKYRCSWLSIAILGALACCNGDTWASELGAVMSSGEPVLITSLQPVPRGTNGAVSTSGIVMSLLGGLVVGIGHYLTLLMFVSSPVMISAPAQWPIIIVGAVGGLLGSLIDSVIGATMQFSGMELGMDSNGKIVERPGDGVIPISGSYILDNHAVNLISSLLTALLLPRIA 258          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A6B2ED81_9DIPT (Transmembrane protein 19 (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2ED81_9DIPT)

HSP 1 Score: 204 bits (518), Expect = 3.260e-62
Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREI---APNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            + PVDF   YR+SWLG+A+L A +CCNGDTWASELGSVLA GDPFLITT ++VPRGTNGGVT VGLL S  GGLVIG  Y++ +I +   +DR I   +P Q  ++L GG+ GLLGS++DSLIGA+LQFSG+D + G+IVE   +GV  ISG  +LDNHSVNL+SSI T +L+P IA
Sbjct:  150 ERPVDFSRLYRSSWLGIALLSAFACCNGDTWASELGSVLATGDPFLITTRKRVPRGTNGGVTVVGLLVSFLGGLVIGLTYYLTVIYT---VDRAILLRSPVQWPLVLFGGIAGLLGSVIDSLIGATLQFSGQD-EHGRIVEHPGKGVRHISGIRILDNHSVNLISSIATGVLMPVIA 322          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A7R9HKA6_9NEOP (Transmembrane protein 19 n=2 Tax=Timema TaxID=61471 RepID=A0A7R9HKA6_9NEOP)

HSP 1 Score: 206 bits (525), Expect = 3.360e-62
Identity = 101/174 (58.05%), Postives = 128/174 (73.56%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            + P+DF   YR+SWLG+ VLGA +CCNGDTWASELGSV+   DP LITTFQ+VPRGTNG VTPVGL+ S  GG V+G +Y++ ++ S       ++P Q  +++ G  GG +GSLLDSL+GA+LQ+SG + KTG IV     GV  ISG  VLDNHSVNL+SSI T LLLP++A
Sbjct:  187 ERPIDFTRDYRSSWLGIGVLGAFACCNGDTWASELGSVIGNKDPLLITTFQRVPRGTNGAVTPVGLVLSAVGGAVVGLSYYLAVLYSVDPHILSLSPPQWPLVVAGAFGGFIGSLLDSLLGATLQYSGVNEKTGCIVGCPGRGVRHISGSSVLDNHSVNLISSIATGLLLPRLA 360          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A182GMV4_AEDAL (Transmembrane protein 19 n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GMV4_AEDAL)

HSP 1 Score: 201 bits (511), Expect = 7.970e-62
Identity = 101/174 (58.05%), Postives = 135/174 (77.59%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            + P+DF   YR+SWLG+AV+ A +C NGDTWASELG+VLA+GDPFLIT  ++VPRGTNGGV+ +GL+ S  GGL IG +Y++ +  +  S   E++PNQ  VI+ GG+ GLLGS++DS+IGA+LQ+SG D + GKIVE   +GV  I G  +LDNHSVNL+SSI+TALL+P +A
Sbjct:   95 ERPIDFGQLYRSSWLGIAVMSAFACSNGDTWASELGTVLARGDPFLITNRKRVPRGTNGGVSFIGLVVSFLGGLAIGLSYYLTVRYTVDSKILELSPNQWPVIVFGGVAGLLGSIVDSIIGATLQYSGVDPR-GKIVERPGKGVKHICGVRILDNHSVNLISSIITALLMPSVA 267          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A0K8TX67_BACLA (Transmembrane protein 19 n=7 Tax=Dacini TaxID=43871 RepID=A0A0K8TX67_BACLA)

HSP 1 Score: 200 bits (508), Expect = 1.240e-60
Identity = 101/174 (58.05%), Postives = 135/174 (77.59%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            + P+DF ++YR+SWLG+AV+ A +CCNGDTWASELGSVL+K DPFLITT ++VPRGTNGGV+  GL+AS+ GGL +G  Y++ +  +  S   + +P+Q  +I+ GG+ GLLGSLLDSL+GA++Q+SG D K GKIVE    GV  ISG  +LDNHSVNL+SSI+T + +P IA
Sbjct:  154 ERPIDFSNEYRSSWLGIAVMSAFACCNGDTWASELGSVLSKKDPFLITTRRRVPRGTNGGVSIPGLVASLAGGLFVGVVYYITVRYTVESHALQTSPSQWPLIIFGGVAGLLGSLLDSLLGATMQYSGVD-KEGKIVECPGIGVRHISGLRILDNHSVNLISSIVTGVTMPLIA 326          
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Match: A0A0L7QNF3_9HYME (Transmembrane protein 19 n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QNF3_9HYME)

HSP 1 Score: 198 bits (504), Expect = 6.180e-60
Identity = 96/174 (55.17%), Postives = 137/174 (78.74%), Query Frame = 1
Query:    1 DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTFQKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQLLVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGKMVLDNHSVNLVSSILTALLLPKIA 522
            + PVDF   YR+SWL + +LGA +CCNGDTWASE+GSV+  GDPFLIT  +KVP+GTNGGV+ VGLL S+ GG+ +G ++++ I+M+  ++  ++A  Q  +I++GG+GG  GS++DS++GA+LQ+SG + K G IVE   +GV  ISG+ VLDNHSVNL+SS++TAL+LP+IA
Sbjct:  164 ERPVDFDKYYRSSWLSVGILGAFACCNGDTWASEIGSVVGSGDPFLITNRKKVPKGTNGGVSWVGLLVSLLGGMTVGLSHYITILMTVDTVVLQLAAPQWPIIIMGGIGGFFGSIVDSILGATLQYSGINEK-GIIVEHPGKGVRHISGRQVLDNHSVNLLSSVITALILPEIA 336          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103869.628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C76845E2.700e-6768.67transmembrane protein 19-like n=1 Tax=Eurytemora a... [more]
UPI001E67653D1.810e-6558.14transmembrane protein 19-like n=1 Tax=Procambarus ... [more]
UPI000F67A8EA5.290e-6458.72transmembrane protein 19-like isoform X2 n=1 Tax=P... [more]
A0A7R9PJE0_TIMGE4.680e-6358.05Transmembrane protein 19 n=1 Tax=Timema genevievae... [more]
A0A3R7MF35_PENVA9.730e-6357.14Transmembrane protein 19 n=8 Tax=Penaeus TaxID=133... [more]
A0A6B2ED81_9DIPT3.260e-6262.15Transmembrane protein 19 (Fragment) n=1 Tax=Phlebo... [more]
A0A7R9HKA6_9NEOP3.360e-6258.05Transmembrane protein 19 n=2 Tax=Timema TaxID=6147... [more]
A0A182GMV4_AEDAL7.970e-6258.05Transmembrane protein 19 n=2 Tax=Aedes albopictus ... [more]
A0A0K8TX67_BACLA1.240e-6058.05Transmembrane protein 19 n=7 Tax=Dacini TaxID=4387... [more]
A0A0L7QNF3_9HYME6.180e-6055.17Transmembrane protein 19 n=1 Tax=Habropoda laborio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103869contigEcto-sp8_S_contig103869:3..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start0
Seed ortholog score197.2
Seed ortholog evalue6.3e-48
Seed eggNOG ortholog7897.ENSLACP00000007214
Preferred nameTMEM19
Model size522
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0016020
Exons1
EggNOG free text desc.Integral membrane protein DUF92
EggNOG OGs38F8B@33154,3BF3R@33208,3CW2H@33213,480HD@7711,490TC@7742,COG1836@1,KOG4491@2759
Cds size522
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.8872674-CDS-Ecto-sp8_S_contig103869:2..5241681143137.8872674-CDS-Ecto-sp8_S_contig103869:2..524Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103869 3..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103869.628.1prot_Ecto-sp8_S_contig103869.628.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103869 3..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103869.628.1

>prot_Ecto-sp8_S_contig103869.628.1 ID=prot_Ecto-sp8_S_contig103869.628.1|Name=mRNA_Ecto-sp8_S_contig103869.628.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=174bp
DLPVDFRHQYRASWLGMAVLGAISCCNGDTWASELGSVLAKGDPFLITTF
QKVPRGTNGGVTPVGLLASVFGGLVIGFAYFVGIIMSAASMDREIAPNQL
LVILVGGLGGLLGSLLDSLIGASLQFSGKDAKTGKIVEVAREGVIPISGK
MVLDNHSVNLVSSILTALLLPKIA
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mRNA from alignment at Ecto-sp8_S_contig103869:3..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103869.628.1 ID=mRNA_Ecto-sp8_S_contig103869.628.1|Name=mRNA_Ecto-sp8_S_contig103869.628.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103869:3..524+ (Ectocarpus species8 EcLAC_412)
GACCTTCCAGTTGACTTCCGCCACCAGTACCGCGCCAGCTGGCTGGGCAT GGCTGTGTTAGGAGCTATCTCCTGCTGCAACGGGGACACCTGGGCCAGTG AGCTCGGCAGTGTGCTGGCCAAGGGGGACCCTTTCCTCATCACAACCTTC CAGAAGGTCCCAAGGGGAACTAACGGTGGCGTGACACCAGTGGGGTTACT GGCCAGCGTGTTTGGAGGACTCGTGATTGGGTTTGCTTACTTTGTTGGGA TTATAATGTCTGCTGCCTCCATGGACAGGGAGATTGCCCCAAACCAGTTG TTGGTTATCTTGGTCGGTGGTCTTGGAGGGTTGCTTGGATCTCTTCTGGA CAGTTTGATTGGAGCCAGCCTTCAGTTTTCTGGGAAGGATGCTAAGACTG GAAAGATTGTTGAGGTAGCCAGAGAGGGAGTCATCCCCATCTCCGGGAAG ATGGTCCTGGACAACCACAGTGTCAACTTGGTCTCCAGCATCCTCACTGC CTTGCTCTTGCCTAAGATAGCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103869:3..524+

>mRNA_Ecto-sp8_S_contig103869.628.1 ID=mRNA_Ecto-sp8_S_contig103869.628.1|Name=mRNA_Ecto-sp8_S_contig103869.628.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103869:3..524+ (Ectocarpus species8 EcLAC_412)
GACCTTCCAGTTGACTTCCGCCACCAGTACCGCGCCAGCTGGCTGGGCAT
GGCTGTGTTAGGAGCTATCTCCTGCTGCAACGGGGACACCTGGGCCAGTG
AGCTCGGCAGTGTGCTGGCCAAGGGGGACCCTTTCCTCATCACAACCTTC
CAGAAGGTCCCAAGGGGAACTAACGGTGGCGTGACACCAGTGGGGTTACT
GGCCAGCGTGTTTGGAGGACTCGTGATTGGGTTTGCTTACTTTGTTGGGA
TTATAATGTCTGCTGCCTCCATGGACAGGGAGATTGCCCCAAACCAGTTG
TTGGTTATCTTGGTCGGTGGTCTTGGAGGGTTGCTTGGATCTCTTCTGGA
CAGTTTGATTGGAGCCAGCCTTCAGTTTTCTGGGAAGGATGCTAAGACTG
GAAAGATTGTTGAGGTAGCCAGAGAGGGAGTCATCCCCATCTCCGGGAAG
ATGGTCCTGGACAACCACAGTGTCAACTTGGTCTCCAGCATCCTCACTGC
CTTGCTCTTGCCTAAGATAGCT
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