mRNA_Ecto-sp8_S_contig103839.626.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103839.626.1
Unique NamemRNA_Ecto-sp8_S_contig103839.626.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103839.626.1 vs. uniprot
Match: A0A6H5JKU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.340e-24
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 MAVVPSPRLSTRRHDQGVFMYWIPSSVFQMGQTYTMKNNKVRELLGLKPL 150
            +AV PSPRL TRRHDQGVFMYWIPSS+FQMGQTYTMKNNKVRELLGLKPL
Sbjct:  229 LAVTPSPRLFTRRHDQGVFMYWIPSSLFQMGQTYTMKNNKVRELLGLKPL 278
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BLAST of mRNA_Ecto-sp8_S_contig103839.626.1 vs. uniprot
Match: D7FMT8_ECTSI (Oxa1-like homolog, mitochondrial inner membrane insertase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.000e-15
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   46 QGVFMYWIPSSVFQMGQTYTMKNNKVRELLGLKPL 150
            QGVFMYWIPS+VFQMGQTYTMKNNKVRELLGLKPL
Sbjct:  195 QGVFMYWIPSAVFQMGQTYTMKNNKVRELLGLKPL 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103839.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKU0_9PHAE3.340e-2492.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMT8_ECTSI5.000e-1597.14Oxa1-like homolog, mitochondrial inner membrane in... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103839contigEcto-sp8_S_contig103839:20..169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score75.5
Seed ortholog evalue8e-12
Seed eggNOG ortholog2880.D7FMT8
Model size150
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
Cds size150
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.754439-CDS-Ecto-sp8_S_contig103839:19..1691681143137.754439-CDS-Ecto-sp8_S_contig103839:19..169Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103839 20..169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103839.626.1prot_Ecto-sp8_S_contig103839.626.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103839 20..169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103839.626.1

>prot_Ecto-sp8_S_contig103839.626.1 ID=prot_Ecto-sp8_S_contig103839.626.1|Name=mRNA_Ecto-sp8_S_contig103839.626.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=50bp
MAVVPSPRLSTRRHDQGVFMYWIPSSVFQMGQTYTMKNNKVRELLGLKPL
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mRNA from alignment at Ecto-sp8_S_contig103839:20..169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103839.626.1 ID=mRNA_Ecto-sp8_S_contig103839.626.1|Name=mRNA_Ecto-sp8_S_contig103839.626.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103839:20..169+ (Ectocarpus species8 EcLAC_412)
ATGGCTGTAGTCCCCTCACCCCGCCTCTCCACCCGTCGTCATGATCAGGG
CGTGTTCATGTACTGGATACCTTCTTCAGTGTTCCAGATGGGTCAGACGT
ACACCATGAAGAACAACAAGGTGCGCGAACTCCTCGGGTTGAAGCCGCTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103839:20..169+

>mRNA_Ecto-sp8_S_contig103839.626.1 ID=mRNA_Ecto-sp8_S_contig103839.626.1|Name=mRNA_Ecto-sp8_S_contig103839.626.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103839:20..169+ (Ectocarpus species8 EcLAC_412)
ATGGCTGTAGTCCCCTCACCCCGCCTCTCCACCCGTCGTCATGATCAGGG
CGTGTTCATGTACTGGATACCTTCTTCAGTGTTCCAGATGGGTCAGACGT
ACACCATGAAGAACAACAAGGTGCGCGAACTCCTCGGGTTGAAGCCGCTG
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