mRNA_Ecto-sp8_S_contig10378.618.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10378.618.1
Unique NamemRNA_Ecto-sp8_S_contig10378.618.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: D8LEH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH4_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 7.550e-41
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVR 225
            FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQV+
Sbjct:  231 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVK 305
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A6H5JBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA5_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 7.550e-41
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVR 225
            FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQV+
Sbjct:  137 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVK 211
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A835ZKB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKB1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.830e-20
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 FAGCNVESS-SVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVR 225
            +A C VES+ S +L V AERT +LKAVS+G++ FR++A+AS     FP P+G  RQFLAEFG+FPVYLVNRD+ V+
Sbjct:  702 YAACGVESATSTELCVSAERTALLKAVSDGQSAFRALAIASAAGAAFPMPEGGSRQFLAEFGDFPVYLVNRDLLVK 777
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: M2XY11_GALSU (Cytidine deaminase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY11_GALSU)

HSP 1 Score: 79.0 bits (193), Expect = 7.220e-17
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVR 225
            ++GCNVE++S  LS+ AERT V+KAVSEG T FR++A+++DT  G   P G  RQFL+EFG FPV  +  D  +R
Sbjct:   49 YSGCNVENASYGLSICAERTAVVKAVSEGNTCFRAIAISTDT-TGEVWPCGACRQFLSEFGNFPVIFIGHDGSIR 122
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A816HQF7_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816HQF7_9BILA)

HSP 1 Score: 77.0 bits (188), Expect = 1.670e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFG-EFPVYLVN 207
            ++GCN+E++S  LS  AERT V+KAVSEGE  F+ + + SD +LGF  P G  RQ LAEFG +  VYL+N
Sbjct:    8 YSGCNIENASYPLSTCAERTVVVKAVSEGEKSFQKIVITSDVELGFTGPCGSCRQTLAEFGLDLDVYLIN 77
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A821EJD6_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821EJD6_9BILA)

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-16
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFG-EFPVYLVN 207
            + GCNVE++S  LS  AERTT++KAVSEGE  F+++A   D +LGF  P G  RQ LAEFG  F VYL+N
Sbjct:   12 YNGCNVENASYPLSTCAERTTIVKAVSEGEQSFQTIATTWDVELGFIGPYGSCRQTLAEFGLGFDVYLIN 81
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BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A818UHH6_9BILA (Cytidine deaminase n=5 Tax=Rotaria TaxID=231623 RepID=A0A818UHH6_9BILA)

HSP 1 Score: 78.2 bits (191), Expect = 3.090e-16
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFG-EFPVYLVN 207
            ++GCN+E++S  L+  AERT V+KAVSEGE  F+ +A+ SD +LGF  P G  RQ LAEFG +  VYLVN
Sbjct:   49 YSGCNIENASYALATCAERTAVVKAVSEGEKSFKKLAITSDVELGFTGPCGSCRQTLAEFGLDLDVYLVN 118
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A821WIZ9_9BILA (Cytidine deaminase n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821WIZ9_9BILA)

HSP 1 Score: 77.4 bits (189), Expect = 3.250e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFG-EFPVYLVN 207
            ++GCNVE+++  LS  AERT ++KAVSEGE  FR + + SD +LGF  P G  RQ LAEFG +  VYL+N
Sbjct:   49 YSGCNVENAAYPLSTCAERTAIVKAVSEGEKSFRKIVITSDVELGFTGPCGSCRQTLAEFGLDLDVYLIN 118
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: UPI000A2A771C (uncharacterized protein LOC110232566 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A771C)

HSP 1 Score: 77.4 bits (189), Expect = 3.330e-16
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFG-EFPVYLVNRDMQVRCT 231
            F GCNVE++S  LS+ AERT ++KAVS G T+F+ +A+++D    F SP G  RQF+AEFG +  V+LVNRDM  + T
Sbjct:   52 FTGCNVENASYGLSICAERTAIVKAVSSGYTKFKEIAVSTDM-XEFGSPCGACRQFIAEFGLDIIVHLVNRDMDCQTT 128
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Match: A0A7C2Y658_9BACT (Cytidine deaminase n=3 Tax=Mesoaciditogaceae TaxID=1769717 RepID=A0A7C2Y658_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 3.840e-16
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPDGPGRQFLAEFGEFPVYLVNRDMQVRCTHYEK 243
            + GCNVE+SS  LS+ AER  + KAVSEGET+FR +A+ +DT     SP G  RQ +AEFG+F V L N +  +  T  EK
Sbjct:   38 YTGCNVENSSFGLSMCAERIAIFKAVSEGETKFRRIAIVADTKRPV-SPCGACRQVMAEFGDFEVILSNENGDIEKTSVEK 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10378.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH4_ECTSI7.550e-4198.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBA5_9PHAE7.550e-4198.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKB1_9STRA1.830e-2059.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
M2XY11_GALSU7.220e-1753.33Cytidine deaminase n=1 Tax=Galdieria sulphuraria T... [more]
A0A816HQF7_9BILA1.670e-1654.29Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A821EJD6_9BILA1.700e-1657.14Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A818UHH6_9BILA3.090e-1655.71Cytidine deaminase n=5 Tax=Rotaria TaxID=231623 Re... [more]
A0A821WIZ9_9BILA3.250e-1654.29Cytidine deaminase n=4 Tax=Rotaria sp. Silwood1 Ta... [more]
UPI000A2A771C3.330e-1652.56uncharacterized protein LOC110232566 n=1 Tax=Exaip... [more]
A0A7C2Y658_9BACT3.840e-1650.62Cytidine deaminase n=3 Tax=Mesoaciditogaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10378contigEcto-sp8_S_contig10378:6458..6700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score152.1
Seed ortholog evalue1.1e-34
Seed eggNOG ortholog2880.D8LEH4
Preferred nameCDA
Model size243
KEGG rclassRC00074,RC00514
KEGG koko:K01489
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0001882,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004126,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006140,GO:0006206,GO:0006213,GO:0006216,GO:0006217,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0008655,GO:0009056,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009120,GO:0009163,GO:0009164,GO:0009451,GO:0009790,GO:0009792,GO:0009892,GO:0009972,GO:0009987,GO:0010563,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019239,GO:0019438,GO:0019439,GO:0019858,GO:0022607,GO:0023052,GO:0030141,GO:0030308,GO:0031323,GO:0031324,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0034774,GO:0036094,GO:0036230,GO:0040008,GO:0042119,GO:0042454,GO:0042455,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043167,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046087,GO:0046092,GO:0046108,GO:0046109,GO:0046121,GO:0046125,GO:0046127,GO:0046131,GO:0046132,GO:0046133,GO:0046134,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0047844,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055086,GO:0060205,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070820,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:0101002,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659,GO:1904724,GO:1904813
Exons1
EggNOG free text desc.cytidine deaminase activity
EggNOG OGsCOG0295@1,KOG0833@2759
Ec32 ortholog descriptionCytidine deaminase SAM EF-hand Tudor and KOW domain protein
Ec32 orthologEc-21_004670.1
EC3.5.4.5
Cds size243
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143137.0580313-CDS-Ecto-sp8_S_contig10378:6457..67001681143137.0580313-CDS-Ecto-sp8_S_contig10378:6457..6700Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10378 6458..6700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10378.618.1prot_Ecto-sp8_S_contig10378.618.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10378 6458..6700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10378.618.1

>prot_Ecto-sp8_S_contig10378.618.1 ID=prot_Ecto-sp8_S_contig10378.618.1|Name=mRNA_Ecto-sp8_S_contig10378.618.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=81bp
FAGCNVESSSVDLSVGAERTTVLKAVSEGETRFRSMAMASDTDLGFPSPD
GPGRQFLAEFGEFPVYLVNRDMQVRCTHYEK
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mRNA from alignment at Ecto-sp8_S_contig10378:6458..6700-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10378.618.1 ID=mRNA_Ecto-sp8_S_contig10378.618.1|Name=mRNA_Ecto-sp8_S_contig10378.618.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10378:6458..6700- (Ectocarpus species8 EcLAC_412)
TTCGCCGGATGCAACGTAGAGTCCTCATCGGTGGACCTCAGCGTTGGGGC
AGAGCGCACAACCGTGCTCAAGGCCGTCAGCGAGGGCGAGACTCGGTTTC
GATCGATGGCCATGGCGAGCGACACGGACCTGGGCTTTCCGTCCCCAGAC
GGGCCCGGGCGACAGTTCCTTGCAGAGTTCGGCGAGTTCCCCGTGTACCT
CGTCAACCGCGACATGCAGGTACGCTGTACTCACTATGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10378:6458..6700-

>mRNA_Ecto-sp8_S_contig10378.618.1 ID=mRNA_Ecto-sp8_S_contig10378.618.1|Name=mRNA_Ecto-sp8_S_contig10378.618.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10378:6458..6700- (Ectocarpus species8 EcLAC_412)
TTCGCCGGATGCAACGTAGAGTCCTCATCGGTGGACCTCAGCGTTGGGGC
AGAGCGCACAACCGTGCTCAAGGCCGTCAGCGAGGGCGAGACTCGGTTTC
GATCGATGGCCATGGCGAGCGACACGGACCTGGGCTTTCCGTCCCCAGAC
GGGCCCGGGCGACAGTTCCTTGCAGAGTTCGGCGAGTTCCCCGTGTACCT
CGTCAACCGCGACATGCAGGTACGCTGTACTCACTATGAGAAG
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