mRNA_Ecto-sp8_S_contig10356.582.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10356.582.1
Unique NamemRNA_Ecto-sp8_S_contig10356.582.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10356.582.1 vs. uniprot
Match: A0A6H5L8H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.590e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV 120
            QSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV
Sbjct:  900 QSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV 939
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10356.582.1 vs. uniprot
Match: D7G8I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.580e-17
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV 120
            QSST+FGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV
Sbjct: 1613 QSSTMFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV 1652
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10356.582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8H6_9PHAE2.590e-17100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8I0_ECTSI6.580e-1797.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10356contigEcto-sp8_S_contig10356:4203..4322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score82.0
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog2880.D7G8I0
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2CN6T@1,2QU8Z@2759
Cds size120
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143134.6592858-CDS-Ecto-sp8_S_contig10356:4202..43221681143134.6592858-CDS-Ecto-sp8_S_contig10356:4202..4322Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10356 4203..4322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10356.582.1prot_Ecto-sp8_S_contig10356.582.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10356 4203..4322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10356.582.1

>prot_Ecto-sp8_S_contig10356.582.1 ID=prot_Ecto-sp8_S_contig10356.582.1|Name=mRNA_Ecto-sp8_S_contig10356.582.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=40bp
QSSTIFGGVSGAAVDGQLSRFFSDGSTTMTSLETQPWWQV
back to top

mRNA from alignment at Ecto-sp8_S_contig10356:4203..4322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10356.582.1 ID=mRNA_Ecto-sp8_S_contig10356.582.1|Name=mRNA_Ecto-sp8_S_contig10356.582.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10356:4203..4322- (Ectocarpus species8 EcLAC_412)
CAGAGTTCCACCATATTCGGGGGCGTGTCAGGGGCAGCAGTTGACGGCCA
GCTTAGCCGATTTTTCTCCGACGGATCCACCACGATGACCTCCCTCGAGA
CGCAGCCGTGGTGGCAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10356:4203..4322-

>mRNA_Ecto-sp8_S_contig10356.582.1 ID=mRNA_Ecto-sp8_S_contig10356.582.1|Name=mRNA_Ecto-sp8_S_contig10356.582.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10356:4203..4322- (Ectocarpus species8 EcLAC_412)
CAGAGTTCCACCATATTCGGGGGCGTGTCAGGGGCAGCAGTTGACGGCCA
GCTTAGCCGATTTTTCTCCGACGGATCCACCACGATGACCTCCCTCGAGA
CGCAGCCGTGGTGGCAGGTA
back to top