mRNA_Ecto-sp8_S_contig10350.569.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI) HSP 1 Score: 756 bits (1951), Expect = 6.700e-266 Identity = 489/543 (90.06%), Postives = 490/543 (90.24%), Query Frame = 1
Query: 556 MVRDDGFAAAXXXXXXXXXXXXXXXXXXXXXPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXX---YFPDGAMSSSXXXXXXXDMRSPLVTGAVAGAAAGMHHLMLPSTAGGAGGSSHADPDFHHLAGPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----DSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAXXXXXXXXXXXGDLAVLKGSGLLSPASAADGNSXXXXXXXXXXXXXXXXXXXXX-PASTAGGEASRRMAGLPVPEAQVLSALEGQGSDGEE 2157
MVRDDGFAAA PLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXX YFPDGAMS XXXXXXX MRSPLV+GAVA GMHHLMLPSTAGGAGGSSHADPD HHLA PDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGA GDLAVLKGSGLLSPASAADGNS XXXXXXXXXXXXXXXXXXXX PA TAGGEASRRMAGLPVPEAQVLSALEGQ SDGEE
Sbjct: 1 MVRDDGFAAAPQMQQHHGSMSASRHHQPQQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXXXYFPDGAMSXXXXXXXXXXMRSPLVSGAVAXXXXGMHHLMLPSTAGGAGGSSHADPDLHHLAAPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAGRASAASA---GDLAVLKGSGLLSPASAADGNSGXXXXXXXXXXXXXXXXXXXXSPALTAGGEASRRMAGLPVPEAQVLSALEGQTSDGEE 540
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA) HSP 1 Score: 238 bits (608), Expect = 3.980e-70 Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 1
Query: 712 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAV 1164
YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT++++CPP LLD LGDR TIARIVKET AQVVVNKK+ R+IVRG +V +A V+A+I A
Sbjct: 42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAAA 192
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA) HSP 1 Score: 235 bits (600), Expect = 3.260e-66 Identity = 115/151 (76.16%), Postives = 134/151 (88.74%), Query Frame = 1
Query: 712 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAV 1164
YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT+++ECPP LLD LGDR TIARIVKET AQVVVNKK+ R+I+RG+ +V +A ++ +I A
Sbjct: 57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAAA 207
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI) HSP 1 Score: 133 bits (335), Expect = 7.570e-29 Identity = 76/176 (43.18%), Postives = 107/176 (60.80%), Query Frame = 1
Query: 718 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVG 1230
++R GFVRC MDI EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+P + AA V ++ AP+ AG + + IECPP L+ L R +TI RI +E+ A VV+N+K+ ++IV G +SV L + +I +G GL + P + F G
Sbjct: 25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGLGGAVPPNFLDFPAG 200
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.330e-23 Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 718 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKI 1083
+++ GFVRC +DI EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+P + AA V ++ AP+ AG + V++ I+CPP L+ L R +TI RI +E+ A VV+N+K+
Sbjct: 292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 5.230e-17 Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 1
Query: 766 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPI---------------------------------KAGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLA 1128
EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+P + AA V ++ P AG + V++ ++CPP L+ L R +TI RI +E+ A VV+N+K+ ++IV G +SV LA
Sbjct: 318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLA 473
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 5.010e-14 Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 814 MKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVG 1230
++H++GC MWVDQ+ LKL ITG D+P + AA V ++ AP+ AG + + IECPP L+ L R +TI RI +E+ A VV+N+K+ ++IV G +SV L + +I +G G + P + F G
Sbjct: 59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGPGGAVPPNFLDFPAG 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10350.569.1 >prot_Ecto-sp8_S_contig10350.569.1 ID=prot_Ecto-sp8_S_contig10350.569.1|Name=mRNA_Ecto-sp8_S_contig10350.569.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=724bp TRQGITRPSPCDAKATSSGGSNTRGEHTSTQVLSLFALWVLPHFSDFGRTback to top mRNA from alignment at Ecto-sp8_S_contig10350:531..4641- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10350.569.1 ID=mRNA_Ecto-sp8_S_contig10350.569.1|Name=mRNA_Ecto-sp8_S_contig10350.569.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10350:531..4641- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10350:531..4641- >mRNA_Ecto-sp8_S_contig10350.569.1 ID=mRNA_Ecto-sp8_S_contig10350.569.1|Name=mRNA_Ecto-sp8_S_contig10350.569.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2172bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10350:531..4641- (Ectocarpus species8 EcLAC_412)back to top |