mRNA_Ecto-sp8_S_contig10350.569.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10350.569.1
Unique NamemRNA_Ecto-sp8_S_contig10350.569.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 756 bits (1951), Expect = 6.700e-266
Identity = 489/543 (90.06%), Postives = 490/543 (90.24%), Query Frame = 1
Query:  556 MVRDDGFAAAXXXXXXXXXXXXXXXXXXXXXPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXX---YFPDGAMSSSXXXXXXXDMRSPLVTGAVAGAAAGMHHLMLPSTAGGAGGSSHADPDFHHLAGPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----DSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAXXXXXXXXXXXGDLAVLKGSGLLSPASAADGNSXXXXXXXXXXXXXXXXXXXXX-PASTAGGEASRRMAGLPVPEAQVLSALEGQGSDGEE 2157
            MVRDDGFAAA                     PLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXX   YFPDGAMS  XXXXXXX MRSPLV+GAVA    GMHHLMLPSTAGGAGGSSHADPD HHLA PDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     DSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGA           GDLAVLKGSGLLSPASAADGNS XXXXXXXXXXXXXXXXXXXX PA TAGGEASRRMAGLPVPEAQVLSALEGQ SDGEE
Sbjct:    1 MVRDDGFAAAPQMQQHHGSMSASRHHQPQQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXXXYFPDGAMSXXXXXXXXXXMRSPLVSGAVAXXXXGMHHLMLPSTAGGAGGSSHADPDLHHLAAPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAGRASAASA---GDLAVLKGSGLLSPASAADGNSGXXXXXXXXXXXXXXXXXXXXSPALTAGGEASRRMAGLPVPEAQVLSALEGQTSDGEE 540          
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 238 bits (608), Expect = 3.980e-70
Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 1
Query:  712 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAV 1164
            YSIKRCQGFVRCDMDIDAEVVGWVIGK+GSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT++++CPP LLD LGDR TIARIVKET AQVVVNKK+ R+IVRG   +V +A   V+A+I  A 
Sbjct:   42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAAA 192          
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 235 bits (600), Expect = 3.260e-66
Identity = 115/151 (76.16%), Postives = 134/151 (88.74%), Query Frame = 1
Query:  712 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAV 1164
            YSIKRCQGF+RCDMDIDAEVVGWVIG+NGSTIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT+++ECPP LLD LGDR TIARIVKET AQVVVNKK+ R+I+RG+  +V +A   ++ +I  A 
Sbjct:   57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAAA 207          
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 7.570e-29
Identity = 76/176 (43.18%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  718 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVG 1230
            ++R  GFVRC MDI  EVVGWVIG++G+ IK+MKH++GC MWVDQ+ LKL ITG D+P +  AA  V   ++ AP+    AG  +   +  IECPP L+  L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV L    +  +I       +G GL  + P +   F  G
Sbjct:   25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGLGGAVPPNFLDFPAG 200          
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.330e-23
Identity = 62/127 (48.82%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  718 IKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKI 1083
            +++  GFVRC +DI  EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+P +  AA  V   ++ AP+    AG  +  V++ I+CPP L+  L  R  +TI RI +E+ A VV+N+K+
Sbjct:  292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418          
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.230e-17
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  766 EVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPI---------------------------------KAGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLA 1128
            EVVGWVIG++GS IK+MKH++GC MWVDQ+ LKL ITG D+P +  AA  V   ++  P                                   AG  +  V++ ++CPP L+  L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV LA
Sbjct:  318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLA 473          
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.010e-14
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  814 MKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTIECPPQLLDDLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVG 1230
            ++H++GC MWVDQ+ LKL ITG D+P +  AA  V   ++ AP+    AG  +   +  IECPP L+  L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV L    +  +I       +G G   + P +   F  G
Sbjct:   59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGPGGAVPPNFLDFPAG 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10350.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQB1_ECTSI6.700e-26690.06SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZGS8_9STRA3.980e-7078.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA3.260e-6676.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHT5_ECTSI7.570e-2943.18SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA2.330e-2348.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJQ9_9STRA5.230e-1738.46SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JET1_9PHAE5.010e-1436.81SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10350contigEcto-sp8_S_contig10350:531..4641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2174
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionK Homology domain
Ec32 orthologEc-01_006780.1
Cds size2172
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143133.997279-CDS-Ecto-sp8_S_contig10350:531..19071681143133.997279-CDS-Ecto-sp8_S_contig10350:531..1907Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10350 532..1907 -
1681143134.026029-CDS-Ecto-sp8_S_contig10350:3845..46411681143134.026029-CDS-Ecto-sp8_S_contig10350:3845..4641Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10350 3846..4641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10350.569.1prot_Ecto-sp8_S_contig10350.569.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10350 532..4641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10350.569.1

>prot_Ecto-sp8_S_contig10350.569.1 ID=prot_Ecto-sp8_S_contig10350.569.1|Name=mRNA_Ecto-sp8_S_contig10350.569.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=724bp
TRQGITRPSPCDAKATSSGGSNTRGEHTSTQVLSLFALWVLPHFSDFGRT
REFAFQSWGGAPDKPQERAFVGSATLGDTLADFWALDVHQQAQPQPQQQE
RQLQQQQQQRQRQRQRQRQQTESIGERMAPIFHQQQMDHHAHHPAWEDGR
QARPGTHYPLQQHQHQHPHQHQQWPAQGRLHINPAMVRDDGFAAAPPMQQ
HHGSMSASRHHQPQQQPLGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCD
MDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVE
HAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKE
THAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVST
PDSHGSFGVGGGGGGAGAGYFPDGAMSSSGRGGGGGDMRSPLVTGAVAGA
AAGMHHLMLPSTAGGAGGSSHADPDFHHLAGPDYRHARDTAEFHHLATWQ
QEQQQLELKSEHSHQPLQRHHHHGRGVGSDTDDSEIETVSLGSIGARTPV
SSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESS
TSRSSTPTTARTTPRVHFPEGLRALVGGAGGASAASAASAGDLAVLKGSG
LLSPASAADGNSGGGGSNGGGGKPAGSLAPPPSPASTAGGEASRRMAGLP
VPEAQVLSALEGQGSDGEEEEQEG
back to top

mRNA from alignment at Ecto-sp8_S_contig10350:531..4641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10350.569.1 ID=mRNA_Ecto-sp8_S_contig10350.569.1|Name=mRNA_Ecto-sp8_S_contig10350.569.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10350:531..4641- (Ectocarpus species8 EcLAC_412)
ACACGGCAAGGCATCACACGCCCTTCCCCCTGCGACGCGAAAGCCACGTC ATCCGGCGGCAGCAACACCCGGGGAGAGCACACGAGCACACAAGTTTTAT CTCTCTTTGCTCTTTGGGTCCTTCCGCACTTCTCAGACTTCGGACGTACA CGCGAATTCGCATTCCAGTCGTGGGGAGGAGCGCCGGACAAACCGCAAGA GAGGGCGTTCGTTGGCAGCGCCACGTTGGGAGATACGCTGGCGGACTTCT GGGCCCTCGACGTGCACCAGCAGGCACAGCCCCAGCCCCAGCAGCAAGAG AGGCAGCTGCAGCAGCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCA GCGGCAGCAGACGGAGAGCATAGGAGAGCGGATGGCACCCATATTTCACC AGCAGCAGATGGATCACCACGCCCACCACCCGGCCTGGGAAGACGGCAGA CAAGCCCGTCCGGGCACCCACTACCCCCTCCAGCAGCACCAGCACCAGCA CCCGCACCAGCACCAGCAATGGCCTGCTCAAGGCCGGCTACACATCAACC CGGCGATGGTCCGCGACGACGGATTCGCCGCTGCCCCGCCGATGCAGCAG CACCACGGCAGCATGTCCGCCTCGCGCCACCACCAGCCCCAGCAGCAACC GCTCGGCTCGTCCTCGGCCGGGCGTGAGGTTCTCGGGGAGGGATCCTTCA TGGGGCGAGGCTACAGCATCAAACGGTGTCAAGGGTTCGTGAGGTGCGAC ATGGACATCGACGCTGAGGTGGTCGGATGGGTCATCGGAAAAAATGGTGA GTCAAGTTGTTAGGGATCGTGGGGGTGTTGTTGGTGACATCTTGTACATA TATTTGTAGTTGCCGGAAGAGTCATCCATGACGGGCAGTAAAGAAAAAGT ATAACTGCGTGACACACGGGACATTTCGCGATTAAACACCCGAGGCAAGG TCTGAGAGAGCATCTAGCGCAGCGATCCACCAGCGAACTGCCCCGTGTCC TTGGCATCGTAACCCCCCTTTGATGACGCCGTGATTTCGCCAGAGACCGC CGGTTTCCGCCGGGGCCTTTTTTCAGACCAAAAAAAAGAAATGTAATTTT CACCTTCGTTCTAGAAAAAGTAGGAAACTGCTGCTGCTGTCGTCTCATGT CGTGGTGGTGGCACAAACGACGTTCCGATATTGGTGGATCGACCTCCTTT CCTCGCGCTGCTGCTACCTCCACTGCCCGGCACGAAATTGAAAAAGAGGG TTTGACCTCTCGCGCCTCTCCTTCCCGAGAAACGTTCAACAGTTTTCTTG GGACTTCAACGTTGGATTGGCAACACATATTATACACGCTTCCTGTCATG TACACAACTTGATTATTGTGGTATGTAGGTGCAACGCACATCCCACAAAA GAGCCAAGAAATGTGTTGTACTGCCACCACGATCGATCGCGATCGGAGAG ATGATCCGCTTTTTCGACATGATCCTCGTTCAACTCCTAGTATGTTGTTT ATTTCTAGTGAATCCTCATGTGGCCGCCGGTGCCGCATTGAAGCGAAAGG CCCCGGTTGAAGTGCAGTAGATATTTTTCCGAGCTGACTGCTGTGTTACA GAGAACCGACCTCCAGCTGACGAAGTGTACAGGCTTGCTTATGTTGTGCC GCACCATCTGCTACTCACGATAAATATGCATACTAGTCTGGTACATACGT AGACCGAAACTGCACACCACAACCAACACACGGAGACTGTTGGGTGAGAG ATTTGACACGTTGGTTGCTTGCTTCTAAAATAGAGGAGGTTGATGGAAGT AGTGTGCATAGAAGCACTGCCTAACCTGTCGGTGATGAGTTATTTCTGTC TGTAGTGCGATCAATCCTCAACGCTCATACATACCGTGCCGGTGTGACTG CTGCTGGTCGTGTGCATCTCTCAGGAGAGCCGTTGGTGGCGTCGTTTTAC CTGCTCGTTTTTTTCCTCTCATTTTGTATTCGTTTTTCCAACGGTGAGCA GCGGAAAGGACGGGGCTGCTGTTGGCTATGACACACTGACGCTCCTATTA TTTTTACGAGCGGGCTTGCGGGTGGTGGAAAACAACGAAATAAATAACGT CCGATGATATCACAATCACGTACTAACAACAGCAGGTGGTTCATTTATTT TTGGGTGTTGGAAAATAATGATACAACGTCCCAAACCTCAGACGTCCCTA TTCACGTGCTTCAGGGTCTTGCGGAGTATTATTTTTCTGTTTGCAGATCT TAGAGTCCCAACGAGGCCCTTGTGTACGTGCCGTGATTGCTTTGTGTGCG TCGACCAAGGCCTTGTGACAAGCGGCAAGAACACGAAGTACATGTCTTGA TGGTATTCTAGATCGTGAAACCTGGTCGTTTGCTATGCTTGGTTTGATTG GTCGACTATAATAGTAAAGTGTACTCAAAACCCGCGTTCGCAGTGTCGTT TGGCATCACGTCATTTGCACCCGCTCTTTCCATCGCGCACATGTTGAACA GTGATACGTTTTTCTCCAGAAAAACCACGCATGCACGCGCGTCGTTAAAA CACACGTCGATTTTTTTCACATGTCGTCAACCCGACGCACATGTGTTGAG TATTCCTCATCATACATACTGCGGACGGACGAAGCATCGCACGGCAGCTC TCGGAATACACGGTGATCGCGCCCACTGACACGTATCCCTCCGCTTTCTC TCCCGCCCGTCCTCTTGTCTGCGCGGACTTTTAGGTAGCACAATCAAGGA CATGAAGCACAAGACCGGGTGCAACATGTGGGTGGACCAGCGCGCGCTCA AGCTCACCATCACCGGCCCGGACCTGCCCTCGGTCGAGCACGCCGCCAAG TCGGTCGACGCCTACGTTGCGGCCGCGCCGATCAAGGCCGGCGCCGTGGA GGCGGCGGTGACCAAGACCATCGAGTGCCCGCCCCAGCTGCTCGACGACC TCGGGGACCGCACCACGATCGCCCGCATCGTTAAGGAGACCCACGCCCAG GTGGTGGTGAACAAGAAGATCGGCCGCATCATCGTGCGCGGGGACCACCG CTCCGTCGACCTCGCCTACGAGAGCGTCCGGGCCATGATCCACAACGCCG TCCACGGAAGCTACGGCCTCGGACTCCGGGTCAGCACCCCCGACAGCCAC GGCTCCTTCGGCGTTGGCGGCGGCGGCGGCGGGGCCGGGGCCGGGTACTT TCCGGATGGCGCCATGAGCAGCAGCGGTCGCGGCGGAGGCGGCGGTGACA TGCGGTCTCCTCTCGTCACCGGCGCGGTGGCCGGGGCGGCGGCGGGGATG CACCACCTGATGCTCCCCTCCACGGCCGGCGGCGCCGGCGGCAGCTCCCA CGCCGACCCGGACTTCCACCACCTCGCCGGCCCCGACTATCGCCACGCGC GCGACACCGCCGAGTTCCACCACCTGGCCACGTGGCAGCAGGAGCAGCAG CAGCTGGAGCTCAAGTCGGAGCACTCGCACCAGCCGCTGCAGCGCCACCA CCACCACGGGCGCGGGGTGGGCTCCGACACGGACGACTCCGAGATCGAGA CGGTGTCCCTCGGGTCCATCGGCGCGCGCACCCCCGTGAGCTCCACCGCG GGCTCCCCGCGCGTGGTGGGGTCGTACAACACCAGCCCCGCCCTGTCCGG CACGGCGTCCACGCCCGTCGGCGACTGGTCCCTCTTTTCCGGCGGCTTCG GCATCGGCATGGCCGCCCTCCAGGAGGGGGAGTCGTCCACCTCGCGCTCC AGCACCCCGACCACCGCCCGCACCACCCCGCGCGTCCACTTCCCCGAGGG CCTCCGCGCCCTCGTCGGCGGCGCCGGGGGCGCCTCCGCCGCCTCCGCCG CCTCCGCGGGCGATCTTGCGGTCCTCAAGGGCTCGGGGCTGCTGTCTCCC GCTAGCGCCGCCGACGGCAACAGCGGCGGCGGTGGCAGCAACGGCGGCGG CGGCAAGCCAGCGGGATCGCTCGCGCCCCCGCCGTCGCCGGCGTCGACGG CCGGCGGCGAGGCCTCCCGCAGGATGGCCGGGCTGCCGGTGCCGGAGGCC CAGGTACTGAGCGCGCTGGAGGGGCAGGGGTCCGACGGCGAGGAGGAGGA GCAGGAGGGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10350:531..4641-

>mRNA_Ecto-sp8_S_contig10350.569.1 ID=mRNA_Ecto-sp8_S_contig10350.569.1|Name=mRNA_Ecto-sp8_S_contig10350.569.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2172bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10350:531..4641- (Ectocarpus species8 EcLAC_412)
ACACGGCAAGGCATCACACGCCCTTCCCCCTGCGACGCGAAAGCCACGTC
ATCCGGCGGCAGCAACACCCGGGGAGAGCACACGAGCACACAAGTTTTAT
CTCTCTTTGCTCTTTGGGTCCTTCCGCACTTCTCAGACTTCGGACGTACA
CGCGAATTCGCATTCCAGTCGTGGGGAGGAGCGCCGGACAAACCGCAAGA
GAGGGCGTTCGTTGGCAGCGCCACGTTGGGAGATACGCTGGCGGACTTCT
GGGCCCTCGACGTGCACCAGCAGGCACAGCCCCAGCCCCAGCAGCAAGAG
AGGCAGCTGCAGCAGCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCA
GCGGCAGCAGACGGAGAGCATAGGAGAGCGGATGGCACCCATATTTCACC
AGCAGCAGATGGATCACCACGCCCACCACCCGGCCTGGGAAGACGGCAGA
CAAGCCCGTCCGGGCACCCACTACCCCCTCCAGCAGCACCAGCACCAGCA
CCCGCACCAGCACCAGCAATGGCCTGCTCAAGGCCGGCTACACATCAACC
CGGCGATGGTCCGCGACGACGGATTCGCCGCTGCCCCGCCGATGCAGCAG
CACCACGGCAGCATGTCCGCCTCGCGCCACCACCAGCCCCAGCAGCAACC
GCTCGGCTCGTCCTCGGCCGGGCGTGAGGTTCTCGGGGAGGGATCCTTCA
TGGGGCGAGGCTACAGCATCAAACGGTGTCAAGGGTTCGTGAGGTGCGAC
ATGGACATCGACGCTGAGGTGGTCGGATGGGTCATCGGAAAAAATGGTAG
CACAATCAAGGACATGAAGCACAAGACCGGGTGCAACATGTGGGTGGACC
AGCGCGCGCTCAAGCTCACCATCACCGGCCCGGACCTGCCCTCGGTCGAG
CACGCCGCCAAGTCGGTCGACGCCTACGTTGCGGCCGCGCCGATCAAGGC
CGGCGCCGTGGAGGCGGCGGTGACCAAGACCATCGAGTGCCCGCCCCAGC
TGCTCGACGACCTCGGGGACCGCACCACGATCGCCCGCATCGTTAAGGAG
ACCCACGCCCAGGTGGTGGTGAACAAGAAGATCGGCCGCATCATCGTGCG
CGGGGACCACCGCTCCGTCGACCTCGCCTACGAGAGCGTCCGGGCCATGA
TCCACAACGCCGTCCACGGAAGCTACGGCCTCGGACTCCGGGTCAGCACC
CCCGACAGCCACGGCTCCTTCGGCGTTGGCGGCGGCGGCGGCGGGGCCGG
GGCCGGGTACTTTCCGGATGGCGCCATGAGCAGCAGCGGTCGCGGCGGAG
GCGGCGGTGACATGCGGTCTCCTCTCGTCACCGGCGCGGTGGCCGGGGCG
GCGGCGGGGATGCACCACCTGATGCTCCCCTCCACGGCCGGCGGCGCCGG
CGGCAGCTCCCACGCCGACCCGGACTTCCACCACCTCGCCGGCCCCGACT
ATCGCCACGCGCGCGACACCGCCGAGTTCCACCACCTGGCCACGTGGCAG
CAGGAGCAGCAGCAGCTGGAGCTCAAGTCGGAGCACTCGCACCAGCCGCT
GCAGCGCCACCACCACCACGGGCGCGGGGTGGGCTCCGACACGGACGACT
CCGAGATCGAGACGGTGTCCCTCGGGTCCATCGGCGCGCGCACCCCCGTG
AGCTCCACCGCGGGCTCCCCGCGCGTGGTGGGGTCGTACAACACCAGCCC
CGCCCTGTCCGGCACGGCGTCCACGCCCGTCGGCGACTGGTCCCTCTTTT
CCGGCGGCTTCGGCATCGGCATGGCCGCCCTCCAGGAGGGGGAGTCGTCC
ACCTCGCGCTCCAGCACCCCGACCACCGCCCGCACCACCCCGCGCGTCCA
CTTCCCCGAGGGCCTCCGCGCCCTCGTCGGCGGCGCCGGGGGCGCCTCCG
CCGCCTCCGCCGCCTCCGCGGGCGATCTTGCGGTCCTCAAGGGCTCGGGG
CTGCTGTCTCCCGCTAGCGCCGCCGACGGCAACAGCGGCGGCGGTGGCAG
CAACGGCGGCGGCGGCAAGCCAGCGGGATCGCTCGCGCCCCCGCCGTCGC
CGGCGTCGACGGCCGGCGGCGAGGCCTCCCGCAGGATGGCCGGGCTGCCG
GTGCCGGAGGCCCAGGTACTGAGCGCGCTGGAGGGGCAGGGGTCCGACGG
CGAGGAGGAGGAGCAGGAGGGA
back to top