mRNA_Ecto-sp8_S_contig103498.566.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103498.566.1
Unique NamemRNA_Ecto-sp8_S_contig103498.566.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: UPI000C7812CB (small ubiquitin-related modifier-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7812CB)

HSP 1 Score: 162 bits (411), Expect = 1.970e-50
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:   22 MGDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            MGDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVP++SLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG
Sbjct:    1 MGDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPVSSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 83
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: A0A0U2T6T1_9MAXI (Small ubiquitin-related modifier n=1 Tax=Paracalanus parvus TaxID=187406 RepID=A0A0U2T6T1_9MAXI)

HSP 1 Score: 158 bits (400), Expect = 1.060e-48
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:   22 MGDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGGA 273
            MGD TEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVP+TSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG+
Sbjct:    1 MGD-TEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPVTSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGGS 83
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: C1BRP8_CALRO (Small ubiquitin-related modifier n=4 Tax=Caligus rogercresseyi TaxID=217165 RepID=C1BRP8_CALRO)

HSP 1 Score: 155 bits (392), Expect = 2.060e-47
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:   28 DETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGGAED 279
            DETEYIKLKVVGQDSNEIHFRVK +TQMGKLKKSYSERVGVP++SLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQ+GG ED
Sbjct:    6 DETEYIKLKVVGQDSNEIHFRVKMSTQMGKLKKSYSERVGVPLSSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQSGGNED 89
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: A0A553PB59_TIGCA (Small ubiquitin-related modifier n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PB59_TIGCA)

HSP 1 Score: 152 bits (385), Expect = 1.880e-46
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:   28 DETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            DE EYIKLKVVGQDSNEIHFRVK +TQMGKLKKSYSERVGVP++SLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG
Sbjct:    6 DEAEYIKLKVVGQDSNEIHFRVKMSTQMGKLKKSYSERVGVPVSSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 86
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: A0A7R8CNS7_LEPSM (SUMO n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8CNS7_LEPSM)

HSP 1 Score: 152 bits (385), Expect = 1.730e-45
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:   28 DETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            DETEYIKLKVVGQDSNEIHFRVK +TQMGKLKKSYSERVGVP++SLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQ+GG
Sbjct:   81 DETEYIKLKVVGQDSNEIHFRVKMSTQMGKLKKSYSERVGVPLSSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQSGG 161
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: C1C2M5_CALCM (Small ubiquitin-related modifier n=2 Tax=Caligus clemensi TaxID=344056 RepID=C1C2M5_CALCM)

HSP 1 Score: 150 bits (379), Expect = 2.100e-45
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:   28 DETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTG 267
            DETEYIKLKVVGQDSNEIHFRVK +TQMGKLKKSYSERVGVP++SLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQ+G
Sbjct:    7 DETEYIKLKVVGQDSNEIHFRVKMSTQMGKLKKSYSERVGVPLSSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQSG 86
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: T1J8J4_STRMM (Small ubiquitin-related modifier n=2 Tax=Arthropoda TaxID=6656 RepID=T1J8J4_STRMM)

HSP 1 Score: 150 bits (378), Expect = 2.130e-45
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 QNKKSDRMGDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            Q++K +   + +EYIKLKVVGQDSNEIHFRVK TTQMGKLKKSYSERVGVP+TSLRFLFDGRRINDDETPK LEME DDVIEVYQEQTGG
Sbjct:    6 QDQKPEAGENASEYIKLKVVGQDSNEIHFRVKMTTQMGKLKKSYSERVGVPVTSLRFLFDGRRINDDETPKQLEMENDDVIEVYQEQTGG 95
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: E9H3D4_DAPPU (Small ubiquitin-related modifier n=3 Tax=Pancrustacea TaxID=197562 RepID=E9H3D4_DAPPU)

HSP 1 Score: 149 bits (375), Expect = 5.570e-45
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:   34 TEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            +EYIKLKVVGQDSNEIHFRVK TTQMGKLKKSYSERVGVP+TSLRFLFDGRRINDDETPK LEME DDVIEVYQEQTGG
Sbjct:   14 SEYIKLKVVGQDSNEIHFRVKMTTQMGKLKKSYSERVGVPVTSLRFLFDGRRINDDETPKQLEMENDDVIEVYQEQTGG 92
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: A0A4Y2GQS7_ARAVE (Small ubiquitin-related modifier n=6 Tax=Arthropoda TaxID=6656 RepID=A0A4Y2GQS7_ARAVE)

HSP 1 Score: 149 bits (375), Expect = 6.100e-45
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:   34 TEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            +EYIKLKVVGQDSNEIHFRVK TTQMGKLKKSYSERVGVP+TSLRFLFDGRRINDDETPK LEME DDVIEVYQEQTGG
Sbjct:   16 SEYIKLKVVGQDSNEIHFRVKMTTQMGKLKKSYSERVGVPVTSLRFLFDGRRINDDETPKQLEMENDDVIEVYQEQTGG 94
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Match: A0A1B6LU80_9HEMI (Small ubiquitin-related modifier n=4 Tax=Pancrustacea TaxID=197562 RepID=A0A1B6LU80_9HEMI)

HSP 1 Score: 149 bits (375), Expect = 7.330e-45
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   25 GDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRFLFDGRRINDDETPKALEMEQDDVIEVYQEQTGG 270
            GD  EYIKLKVVG DSNEIHFRVK TTQMGKLKKSYSERVGVP++SLRFLFDGRRINDDETPK LEME DDVIEVYQEQTGG
Sbjct:   11 GDNAEYIKLKVVGNDSNEIHFRVKMTTQMGKLKKSYSERVGVPVSSLRFLFDGRRINDDETPKQLEMENDDVIEVYQEQTGG 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103498.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C7812CB1.970e-5097.59small ubiquitin-related modifier-like n=1 Tax=Eury... [more]
A0A0U2T6T1_9MAXI1.060e-4896.43Small ubiquitin-related modifier n=1 Tax=Paracalan... [more]
C1BRP8_CALRO2.060e-4792.86Small ubiquitin-related modifier n=4 Tax=Caligus r... [more]
A0A553PB59_TIGCA1.880e-4693.83Small ubiquitin-related modifier n=1 Tax=Tigriopus... [more]
A0A7R8CNS7_LEPSM1.730e-4593.83SUMO n=2 Tax=Lepeophtheirus salmonis TaxID=72036 R... [more]
C1C2M5_CALCM2.100e-4593.75Small ubiquitin-related modifier n=2 Tax=Caligus c... [more]
T1J8J4_STRMM2.130e-4584.44Small ubiquitin-related modifier n=2 Tax=Arthropod... [more]
E9H3D4_DAPPU5.570e-4593.67Small ubiquitin-related modifier n=3 Tax=Pancrusta... [more]
A0A4Y2GQS7_ARAVE6.100e-4593.67Small ubiquitin-related modifier n=6 Tax=Arthropod... [more]
A0A1B6LU80_9HEMI7.330e-4590.24Small ubiquitin-related modifier n=4 Tax=Pancrusta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103498contigEcto-sp8_S_contig103498:212..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score150.2
Seed ortholog evalue4.4e-34
Seed eggNOG ortholog126957.SMAR010026-PA
Model size279
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Ubiquitin homologues
EggNOG OGs3A3FU@33154,3BV33@33208,3E4V5@33213,41ZSU@6656,COG5227@1,KOG1769@2759
Cds size258
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143133.7187676-CDS-Ecto-sp8_S_contig103498:211..4691681143133.7187676-CDS-Ecto-sp8_S_contig103498:211..469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103498 212..469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143133.7279491-UTR-Ecto-sp8_S_contig103498:469..4901681143133.7279491-UTR-Ecto-sp8_S_contig103498:469..490Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103498 470..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103498.566.1prot_Ecto-sp8_S_contig103498.566.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103498 212..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103498.566.1

>prot_Ecto-sp8_S_contig103498.566.1 ID=prot_Ecto-sp8_S_contig103498.566.1|Name=mRNA_Ecto-sp8_S_contig103498.566.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=86bp
MGDETEYIKLKVVGQDSNEIHFRVKQTTQMGKLKKSYSERVGVPITSLRF
LFDGRRINDDETPKALEMEQDDVIEVYQEQTGGAED
back to top

mRNA from alignment at Ecto-sp8_S_contig103498:212..490-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103498.566.1 ID=mRNA_Ecto-sp8_S_contig103498.566.1|Name=mRNA_Ecto-sp8_S_contig103498.566.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103498:212..490- (Ectocarpus species8 EcLAC_412)
CAAAACAAGAAGTCAGACAGAATGGGTGACGAAACCGAGTACATCAAGCT
GAAGGTTGTTGGTCAAGACTCCAATGAGATTCACTTCAGAGTGAAGCAGA
CCACGCAGATGGGCAAGCTGAAGAAGTCTTACTCGGAGAGGGTGGGCGTC
CCCATCACCTCTCTCAGGTTCTTGTTTGATGGAAGAAGGATCAACGATGA
TGAAACTCCTAAAGCCCTTGAGATGGAACAAGATGATGTAATTGAAGTGT
ATCAAGAGCAAACCGGTGGGGCAGAAGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103498:212..490-

>mRNA_Ecto-sp8_S_contig103498.566.1 ID=mRNA_Ecto-sp8_S_contig103498.566.1|Name=mRNA_Ecto-sp8_S_contig103498.566.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103498:212..490- (Ectocarpus species8 EcLAC_412)
ATGGGTGACGAAACCGAGTACATCAAGCTGAAGGTTGTTGGTCAAGACTC
CAATGAGATTCACTTCAGAGTGAAGCAGACCACGCAGATGGGCAAGCTGA
AGAAGTCTTACTCGGAGAGGGTGGGCGTCCCCATCACCTCTCTCAGGTTC
TTGTTTGATGGAAGAAGGATCAACGATGATGAAACTCCTAAAGCCCTTGA
GATGGAACAAGATGATGTAATTGAAGTGTATCAAGAGCAAACCGGTGGGG
CAGAAGAT
back to top