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Homology
BLAST of mRNA_Ecto-sp8_S_contig10348.565.1 vs. uniprot
Match: A0A6H5KJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM1_9PHAE) HSP 1 Score: 519 bits (1336), Expect = 1.390e-180 Identity = 323/337 (95.85%), Postives = 329/337 (97.63%), Query Frame = 1
Query: 166 MDVPSSTTMGEACFSPSTGGDGKRKRNRKAKKFADYVAWEEEATTEREEEPTEDGQHHNKRNRKGKSTATQQTPHQSSPFAATPVASPSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAKXXXXXXXXXXXXQXRKXXXXXXXXXXXXXXXXXXXXXXXEAARTGKEQESSAAVLQPRTDTVQ 1176
MDVPSSTT+G+ACFSP+TGGDGKRKRNRKAKKFADYVAWEEEATTEREE PT+DGQHHNKRNRKGKSTATQQTP+QSSPFAATPVASPSPSDTAPAT SHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAKXXXXXXXXXXXX X XXXXXXXXXXXXXXXXXXXXXXX AAR GKEQESSAAVLQPRTD V+
Sbjct: 1 MDVPSSTTVGDACFSPTTGGDGKRKRNRKAKKFADYVAWEEEATTEREE-PTDDGQHHNKRNRKGKSTATQQTPNQSSPFAATPVASPSPSDTAPATDSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHLMKQDKSLEEDPFYSVAYKATCTAATKAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRGKEQESSAAVLQPRTDMVE 336
BLAST of mRNA_Ecto-sp8_S_contig10348.565.1 vs. uniprot
Match: D7FN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN54_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 1.890e-146 Identity = 225/233 (96.57%), Postives = 227/233 (97.42%), Query Frame = 1
Query: 166 MDVPSSTTMGEACFSPSTGGDGKRKRNRKAKKFADYVAWEEEATTEREEEPTEDGQHHNKRNRKGKSTATQQTPHQSSPFAATPVASPSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADP 864
MDVPSSTTMG+ACFSPSTGGDGKRKRNRKAKKFADYVAWEEEATTEREEEPTEDGQHHNKRNRKGKSTATQQTPHQSSPFAATPVASPSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLK + P
Sbjct: 1 MDVPSSTTMGDACFSPSTGGDGKRKRNRKAKKFADYVAWEEEATTEREEEPTEDGQHHNKRNRKGKSTATQQTPHQSSPFAATPVASPSPSDTAPATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARVEVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGGRPVSLGSISKRIKTSQAELTGLNERINVLKISPVREQP 233
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Model size | 1177 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_008440.1 |
| Cds size | 1176 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143133.652887-CDS-Ecto-sp8_S_contig10348:1..337 | 1681143133.652887-CDS-Ecto-sp8_S_contig10348:1..337 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10348 2..337 - |
| 1681143133.6636612-CDS-Ecto-sp8_S_contig10348:2679..2847 | 1681143133.6636612-CDS-Ecto-sp8_S_contig10348:2679..2847 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10348 2680..2847 - |
| 1681143133.6731803-CDS-Ecto-sp8_S_contig10348:3384..3857 | 1681143133.6731803-CDS-Ecto-sp8_S_contig10348:3384..3857 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10348 3385..3857 - |
| 1681143133.6908875-CDS-Ecto-sp8_S_contig10348:5607..5806 | 1681143133.6908875-CDS-Ecto-sp8_S_contig10348:5607..5806 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10348 5608..5806 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10348.565.1 >prot_Ecto-sp8_S_contig10348.565.1 ID=prot_Ecto-sp8_S_contig10348.565.1|Name=mRNA_Ecto-sp8_S_contig10348.565.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=392bp
WSVVPSSECRGSDRDRNEGEVKLIFADPLPSLAHPLHHPWTPTQTHTSLL PRAAIMDVPSSTTMGEACFSPSTGGDGKRKRNRKAKKFADYVAWEEEATT EREEEPTEDGQHHNKRNRKGKSTATQQTPHQSSPFAATPVASPSPSDTAP ATGSHDTIVSVKKVAGVQNATRKALEWLQYGDMSLVELGQSLPKLSKARV EVVMEALRAAGLVTLVRKHAPNAMGEDHVTEVYRFSAGRSPATALEIGGG RPVSLGSISKRIKTSQAELTGLNERINVLKAEAAKADPEPQQVLEILQHL MKQDKSLEEDPFYSVAYKATCTAATKAAKAAAAAARATAAAQARKKAAEN AVAVAASAAAAEATRQAQEAARTGKEQESSAAVLQPRTDTVQ back to topmRNA from alignment at Ecto-sp8_S_contig10348:2..5806- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig10348.565.1 ID=mRNA_Ecto-sp8_S_contig10348.565.1|Name=mRNA_Ecto-sp8_S_contig10348.565.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5805bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10348:2..5806- (Ectocarpus species8 EcLAC_412) TGGTCTGTGGTGCCGAGCAGCGAGTGCCGAGGCAGCGATCGAGATCGGAA
CGAGGGGGAGGTCAAATTAATATTTGCCGACCCCCTCCCGTCACTTGCAC
ACCCATTGCACCACCCTTGGACACCGACCCAGACACACACCTCCCTCCTG
CCACGAGCAGCGATCATGGACGTGCCTTCTTCCACCACCATGGGCGAAGG
TAAGGGCCTGCCTTGACATTGAAGTGATAGCCAGCAAAGGCCGTTGGTAT
GAATATGAGCATGTGGGAACCGGAGGTATTTGGGCGAAATGCCCTCGATG
TTATAAATTGACCCGACCTCCGTTGGCTGTTGCAGCAGTATGTATACAGC
AGTACCAGTCGAATAAGCATGCACGCACCACCTAGAGAGCCACAAGCCAA
GCGGTACATTTCCTCTATTTCATTGTGTCTCCCTGTAACAACGAAACTAT
CATGGCCATATCCTCACCAGCGATCGAAAGAGGCGAAGTCACAAGTTGCA
CCGCTGCTGTGCACACGACCAATTTTTTACGATGTTTGCGTGTGCGTACA
TGTACCGCTCCACCACATCCCGTTCGACTGCTGTGGGTATATCTCGAATG
GGTAGTCTTTCTGTGCGTGTATTTATTTTTGCTTAATACCGCGCGTGGAT
GGCCTCGACATGAATATTCTCCTTCGTTATCCGTCGCATAAGAGATTTCA
CGAAGCGGCATGGGTGTCGAGCCCGATGACGAATACGAAGGATGGATGCA
GACACATCGATTCCAAGTTTTCGCATCATAATGGCCGCCATAATATGCCA
TCCGACGCCCAGCAAGCACGATCACGTGCAACATCTTGCAGTAGTATGTA
CGAGTACCGCCGTATGGTACTACTGCTGCAAGACTGCTGCAGGGTAGTCT
TTCTGTGTGTGTTTTTATTTTTCCTGAAGACTGCTGCAGATGGACAGGAC
GCGTGGATTACAGAGGAACGAAAAGAACATCAAGCGGCCTCCCACATACC
ATGGTTGATGATATAGGTCTAAACCAGGCTCGAGCATATCGTCATTTTTT
CGGTTTCCTGAGCCAACGACATACTCATACAGCAGTAGATGACGAGAAGA
GGTACTATTATAATAGTGCTCACGACTTGGTCGAACGCAATGGTTGACGG
TCGGAATACCGTTTCTCGGAACATTCCTTGGGTAGGTGCAGCTCGTGCAC
AGCAACCTAGCCCTTACCCCCTCTTGCGCCGCGGCTTAGGCGTACACGTA
GAGCAACCTAGCGTTTCACCTATCCCGCCGTAAGCTTACCTGACAGCAAC
GTGGCTTTTCACCGTGAAGCAACCTAGCGCTAACCGTGCACCCCAACCTA
GCTTTTACCCCTCTTGCGCTGCGCCTTGCCGCAGCCTAGGCTTACGATGT
ACAGACCTAGCGCTTTCCAGCGTGGTATGACTTTTGGTCGGGTTGTTTGT
GTTGGGGTGCCAAAAATTGTACATCAGCAGGTCGGGTTCGACCCAGGGAC
CAGTGGTTTTGCACGGAAGCATGCTATCCATCGGGGTTAATTACATCACC
GTCTGCCCCCCGGCAGTGCCTAGGGCTATATACTGAGACTCTGGAGGCTG
TACACTTGTATACAGGTTCCACAGGAAGATTCCTGTCAACCATTGCGTTC
GAACAAGTCGTGTGCACCCCTCACGAGAGATCCACCAGTTGTCGTTGGGG
TTAAGAAAAGTAGGATAATGCAACTCATCGCGCCCTTGGTGTTGTGTGGA
TACTTTTTTTCGATTTTTGGTGGCAAGACCCCACGCCGGGCGAGGAAAAG
CCATCTCGACCGTGATATTGGGGGGGTTGTCACCCAATGCACTTCTTATG
GTCCGATTGTGAAGCTTTGAAACCTGTAGCAGTGGCGTTTGTACGTGGGG
CGCATCCTCCCTCACATGAACGGTCCCTGTGCTTTTGCTCCACCCACAGC
CTGCTTCTCCCCCTCCACTGGGGGTGACGGCAAACGCAAACGAAATCGCA
AGGCCAAGAAGTTTGCTGACTACGTCGCTTGGGAGGAGGAGGCGACCACC
GAAAGGGAGGAAGAGCCGACGGAAGATGGACAACACCACAACAAACGCAA
TCGCAAGGGCAAGTCAACAGCAACGCAACAAACGCCGCACCAAAGCAGCC
CCTTTGCTGCCACTCCTGTCGCCAGTCCATCACCTTCTGACACTGCTCCT
GCTACCGGTAGTCACGATACGATTGTGTCGGTCAAGAAGGTGGCAGGCGT
CCAGAACGCCACCCGCAAGGCCCTTGAATGGTTGCAGTACGGAGATATGT
CCCTCGTGGAGCTGGGCCAGAGCCTACCGAAGCTTTCCAAAGCTCGCGTG
GAGGTTGTCATGGAGGCTCTGCGAGCTGCTGGTCTCGTAACGCTGGTCAG
GAAGCACGCGCCCAACGCAATGGTGAGAATAGTGACCGCTCACGAGCCCA
AAATTACTCGCTGGTGAGTTGTGTCGGTTTGGCACACGTGTGCGGTGCCT
TTTCGCTTCTCGCTCCCACCGTCGTGTCTGCTGGACGAATCGAAAGAAGC
TGAACCGTAACGAAGGCACCCCGTCGTTACTGGTGTGGAGGGGACTCACA
CCGTTTCCATTTCCAGACGCCAGGGGATCCGCGGAGGACGATTCAAAACA
CCTTTCTAAACAGCAATTGTCTGGTATTATTAATGGGGGTGAAATATGGT
CGTAGGGGAGCTCCAACAATGTTTAGGGGTGCAGAAGAGGAGGCACGGGA
TACACAGTCATGAAGCTTCTGAGTCTCAAGACGCTGACAAACCGTGCGAC
GATACACAATCATGTTGCTGGCTGTTGTGGTATGGCGCAGATGGCATTGA
GTCATGCTCGTTTTCTTTCCGTTGAGTGTTTGGTTTATGGGGGCGCTAAG
CGAGGTAGAACACAAACGTTTACGTCACCCGTACCGCATCGCCGTTGTCT
GGACTGCAGGGAGAGGATCACGTAACCGAGGTGTATCGTTTCTCCGCCGG
CCGATCTCCAGCAACGGCGCTTGAGATCGGAGGGGGGAGGCCTGTCTCTC
TTGGGTCCATCTCGAAGCGCATCAAGACCTCGCAGGCGGAACTAACCGGG
CTTAACGAACGAATCAACGTGCTCAAGGTGATGTGTGTTGAAATATGGCC
CAAAGGGACCTGTTAAGCGTCTTTGGGTTGAAATACATGTACGCGAGAAG
AGTCGTGCAGTAATGTCCACGGAAAGTGAAAGGGGCGAATTTTCTCGCTT
CCGCTGGCCTTGTGGCGAGTCTCGAGAGTATTCTGAAGCCCGATAGGGAT
TCAGTTTCCGTCGCCGATATTCTCAGAACCTATATTCGAAAACGACCCCA
CTTTTTTTACCCCACCAAAAAGTGACCCCACTCTCTGCATTTCACTTGGT
TTTAGAGTAGGCGATCTCCGGTCTCTTCTCTAAAAGCAAGTTGTTTCTCT
TCGGTCCATGTTTCTCGAGATTGCAACGACAGATTTTCGTGTGGGTTAGA
AGAGGTGTCTCTCCTGGCCCGTTCGGCCCCTCCTGCGAGTTTCGTGCTAA
CGCTTGTGTCACCTCGTGAGAACGCGTCCGTTGTTGTATGTCTCACTCGT
AGATTTCCCCCGTGCGCGAACAACCGAACCACCCCTCCCTCATCATTACC
CCCAGTTTTACCCCCACTGGTCGCAAGTACAGCCGCACCCACGACGGGAA
GCATGCACGTCCACGGTTGGTACAGAATCATGCACGAAAGTCGACGACTT
AAGACACACCCCTGTCAACAATGAGTGAAACATACCCCAAACTTTCACCG
ATCACCACTGAGCAAGGCAAGGCAAAAGGCAGTGCTCGAAGGCAGAGTCC
CCACATTCACCAGCACTGAAGTATGTAACCTCATGAGGATGTTGTGTATA
CAAAACTTATTTTTCTCCAGACTGACTGTGGACCACGGCAATATATGACA
CACTAGTCTGTGGACCACTCACCGCAGTCAGTAGTCAGCATATTCTATTG
TCTCTTCCAGACTGATTGTGCTCATAACCCCATAGGCACATCCCATGTTC
TCCCCTTGCCCCTAGCATACAGGCCACACATCTCGCAAGAGATCAACCTC
AACACGACGTGCACCATCCACCTCGCAGGACTAGTTACTGCTGTTGTGAG
GTTGCACAAATATATTTTTGGTCTCCCAGACTGACTGAGGACCACAGCAG
TAATCTGATTGACTGAGGACCACACACAGCAGTAGTCGGCACACAGTGGC
ATCTCTTGCCAGGGCGTGTCTTACCTGCACTTTTGTGGACAGGATCTACT
GTACTGCTGTGGTACTACGTATGCATACATGTATTTGTGCGGCGTACGTA
CGCAGCCAATTGTCAACCATGGCACTTCTTCTATAGATACGTACAGTAGA
TACAGCGCAAGCCGACTGCCAACTGCTAACTTTGGGCTTCTACAATTGTG
TAGATACGCAATTCGACTGCCAATCATGGTGGGTGCACAGGTTATTCGCC
TGCACTTCCCGTCTGCTTGTCGCACACACACACCCAAGCTGCAGAGATCA
TGTACGCCCGGCTTGTGGCCTTCGCGGCTATCCTTCTCCTGTTCGCGTCG
ACTCCGGCTATGAAGAGGAAAACTCCTCATCACAAAGCACTGCCTGCACG
AAAAAATGATGCGTCCACCCCAGCAACGACCCACTTCTTTGCGTCCGGAA
CGGACTCCGGCGGCAATCCTCTCCCTGATGAATCCGTGTTACGGGGCTGC
CCTCGGTCATTCTCTCCCGTACTTAACGACCGGAGAAATAACTGTGGTTC
ATGCTTCCCCGTCTACCCGGCAAAGCGTAGCCTCGCCGATCCTCATCTGA
CGCCAAGGCTACCATGGTCACGGCCGACGGCCACCTGTCGTTGATCCGAC
TCGGTCGGTACCCATGCCAACGCCAAGCCAAGAACGAGGAAAAACGTTGC
TTCTTTCCTTCGTTCAACTTCTTCTTCATCACCGCGAACAACAATACTAT
CATCCTCGACCCCCACATAGATAGATAGATATACCCTCCCTGGCCAATAA
AAGGAAAGGGCTTCAGATGAGGCCGGGGCTTCCCCCCGGGCTTTTATTCG
TACTACGATTTTCAGAGATCCAAGTATTGTAGGAGGTCTCCGGGTTGAGC
TCTCATTGCTGATGACCGGGGCCCAGCCAGGGTGCTGTATACCCACTCCA
ATGTCTATCATCCCACCCACCGAGCTAGTTTAAACATGCGCAAGAGGGTG
CCATATATCATGATGACATCTGGAATAGTGCGTCCAAGCAGCAACTCCAT
ACTCGAGGTAGCTTTGCCACCGCGGGGTAGAGCCCACGAAACCAACTTCT
TGCCGTGTCCTCCTCGTCGTCCGAAACACTTCCGCACACCCCCTACACCT
CGTCGCACTCTCCAATGCTACTCTACCCTGTTGTTGTGCTGCTTTTCGCA
TACTACGACGACGGAATAGGCGGAAGCTGCCAAGGCGGATCCAGAGCCGC
AGCAAGTCCTGGAAATCCTGCAGCACTTGATGAAGCAGGACAAGAGCCTG
GAGGAAGACCCCTTCTACAGCGTTGCGTACAAGGCGACATGCACAGCCGC
CACAAAGGCAGCCAAGGCCGCTGCGGCGGCCGCTAGAGCCACAGCAGCAG
CCCAGGCGAGAAAAAAGGCGGCGGAAAATGCGGTGGCGGTGGCGGCATCG
GCTGCAGCAGCGGAGGCGACAAGACAAGCTCAAGAAGCGGCGAGAACGGG
AAAAGAGCAAGAGTCTTCAGCGGCGGTGCTGCAGCCGAGGACGGACACGG
TGCAG back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig10348:2..5806- >mRNA_Ecto-sp8_S_contig10348.565.1 ID=mRNA_Ecto-sp8_S_contig10348.565.1|Name=mRNA_Ecto-sp8_S_contig10348.565.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10348:2..5806- (Ectocarpus species8 EcLAC_412) TGGTCTGTGGTGCCGAGCAGCGAGTGCCGAGGCAGCGATCGAGATCGGAA CGAGGGGGAGGTCAAATTAATATTTGCCGACCCCCTCCCGTCACTTGCAC ACCCATTGCACCACCCTTGGACACCGACCCAGACACACACCTCCCTCCTG CCACGAGCAGCGATCATGGACGTGCCTTCTTCCACCACCATGGGCGAAGC CTGCTTCTCCCCCTCCACTGGGGGTGACGGCAAACGCAAACGAAATCGCA AGGCCAAGAAGTTTGCTGACTACGTCGCTTGGGAGGAGGAGGCGACCACC GAAAGGGAGGAAGAGCCGACGGAAGATGGACAACACCACAACAAACGCAA TCGCAAGGGCAAGTCAACAGCAACGCAACAAACGCCGCACCAAAGCAGCC CCTTTGCTGCCACTCCTGTCGCCAGTCCATCACCTTCTGACACTGCTCCT GCTACCGGTAGTCACGATACGATTGTGTCGGTCAAGAAGGTGGCAGGCGT CCAGAACGCCACCCGCAAGGCCCTTGAATGGTTGCAGTACGGAGATATGT CCCTCGTGGAGCTGGGCCAGAGCCTACCGAAGCTTTCCAAAGCTCGCGTG GAGGTTGTCATGGAGGCTCTGCGAGCTGCTGGTCTCGTAACGCTGGTCAG GAAGCACGCGCCCAACGCAATGGGAGAGGATCACGTAACCGAGGTGTATC GTTTCTCCGCCGGCCGATCTCCAGCAACGGCGCTTGAGATCGGAGGGGGG AGGCCTGTCTCTCTTGGGTCCATCTCGAAGCGCATCAAGACCTCGCAGGC GGAACTAACCGGGCTTAACGAACGAATCAACGTGCTCAAGGCGGAAGCTG CCAAGGCGGATCCAGAGCCGCAGCAAGTCCTGGAAATCCTGCAGCACTTG ATGAAGCAGGACAAGAGCCTGGAGGAAGACCCCTTCTACAGCGTTGCGTA CAAGGCGACATGCACAGCCGCCACAAAGGCAGCCAAGGCCGCTGCGGCGG CCGCTAGAGCCACAGCAGCAGCCCAGGCGAGAAAAAAGGCGGCGGAAAAT GCGGTGGCGGTGGCGGCATCGGCTGCAGCAGCGGAGGCGACAAGACAAGC TCAAGAAGCGGCGAGAACGGGAAAAGAGCAAGAGTCTTCAGCGGCGGTGC TGCAGCCGAGGACGGACACGGTGCAG back to top
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