mRNA_Ecto-sp8_S_contig10337.550.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10337.550.1
Unique NamemRNA_Ecto-sp8_S_contig10337.550.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10337.550.1 vs. uniprot
Match: D8LHH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH7_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.090e-48
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:  128 MAGIGTGTLMGIHKFRVGRWPAPTNSEENTRTWNVKWQWLVPFTRAKHPSYDRVRTRAACSPQHCDSMVTPRASLGPLRLAFF 376
            MAGIGTGTLMGIHKFRVGRWPAPTNSEENT+TWNVKWQWLVPFTRAKHPS DRVRTRAACSPQ+CD+MVTPRASLGP RL  F
Sbjct:    1 MAGIGTGTLMGIHKFRVGRWPAPTNSEENTKTWNVKWQWLVPFTRAKHPSCDRVRTRAACSPQYCDNMVTPRASLGPFRLVCF 83
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BLAST of mRNA_Ecto-sp8_S_contig10337.550.1 vs. uniprot
Match: A0A6H5LAQ6_9PHAE (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAQ6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.110e-21
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 2 
Query:   38 MPSESWPEQLERVKGNGASILKKPCVRNALMAGIGTGTLMGIHKFRVGR 184
            MPSESWPEQLE VK NGASILKKPCVRNALMAGIGTGTLMGIHKFRVG+
Sbjct:    1 MPSESWPEQLEGVKRNGASILKKPCVRNALMAGIGTGTLMGIHKFRVGK 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10337.550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH7_ECTSI2.090e-4891.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAQ6_9PHAE4.110e-2193.88Cytochrome c oxidase assembly protein COX20, mitoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10337contigEcto-sp8_S_contig10337:2462..5140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1258
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.6519945-UTR-Ecto-sp8_S_contig10337:2461..24981681143132.6519945-UTR-Ecto-sp8_S_contig10337:2461..2498Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10337 2462..2498 +
1681143132.683675-UTR-Ecto-sp8_S_contig10337:4318..51401681143132.683675-UTR-Ecto-sp8_S_contig10337:4318..5140Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10337 4319..5140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.659997-CDS-Ecto-sp8_S_contig10337:2498..26431681143132.659997-CDS-Ecto-sp8_S_contig10337:2498..2643Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10337 2499..2643 +
1681143132.6686053-CDS-Ecto-sp8_S_contig10337:4064..43181681143132.6686053-CDS-Ecto-sp8_S_contig10337:4064..4318Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10337 4065..4318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10337.550.1prot_Ecto-sp8_S_contig10337.550.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10337 2499..4318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10337.550.1

>prot_Ecto-sp8_S_contig10337.550.1 ID=prot_Ecto-sp8_S_contig10337.550.1|Name=mRNA_Ecto-sp8_S_contig10337.550.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=133bp
MPSESWPEQLERVKGNGASILKKPCVRNALMAGIGTGTLMGIHKFRVGRW
PAPTNSEENTRTWNVKWQWLVPFTRAKHPSYDRVRTRAACSPQHCDSMVT
PRASLGPLRLAFFLCWREDGNTDRICHPPSVC*
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mRNA from alignment at Ecto-sp8_S_contig10337:2462..5140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10337.550.1 ID=mRNA_Ecto-sp8_S_contig10337.550.1|Name=mRNA_Ecto-sp8_S_contig10337.550.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2679bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10337:2462..5140+ (Ectocarpus species8 EcLAC_412)
AGTCTCCTCTCCACGCAGCTCTCTCTGAGATAGCAACATGCCCTCTGAAT
CGTGGCCAGAACAACTGGAGCGGGTGAAAGGCAATGGCGCTTCAATCTTG
AAGAAACCCTGCGTCCGCAACGCACTCATGGCAGGCATCGGGACAGGAAC
CCTTATGGGCATCCATAAGTTTCGAGTTGGAAGTGAGTATGTTTATGTTC
ACAGCCGCGGTTGGATGCGTGTGTCATGTTTCGTCCGTGTTCTGGGCGTC
AGCCTGTACCTTTCGGTATAGATGAACGTCTCAGCCGGGGTTGTACTCAG
AAGCTTGTTTTTTCTCCGCCTTCCTTTTGTGGCACTTTCAACAGCGAGCG
GTACATGTTTACCAGTACATACAGCAGTAGCAGCGCCCATATAACGGCTC
AGCATACGCCTGCCCACCAGCGTCCTCCACGCCGCTAGCAATGTGTTATT
ACGTGCGTAGAATAGGCTTCCCTCGGTCGAAGGAGACCGACAGGTCGCAG
TGTCGCAGTAGTATTTACCCACTACCGGGGGCTGGCAGTTCTCTCTTGTT
GAGATTTGGTTAGGAGAAGGTCTCAGAAGAGAGAGAGAGTGCCACGGCAG
GGGAGAGGGAGGGAGGACCGAAGGCCTCATTCCCATCTCCGCGGGTGGCG
CTGAAAAGGTCGCATCCATTAGTTGGGTTTCTTGTTGTTCAGCCATCAGC
AAGATACCTATCTTTCGTACTTTTTGTGTGCAGCCATGGTTACCACGCCT
CCACCCCTGTCCTCCACATGTAAGCGGCTTGCCTTGTGTACTGCTGTAGT
CTAGCCTAGATATTGTTGTAGATACGCACATGCAAGGTACAGCAAATGCA
AAATATCGACCTCCGTATGTACATAGGAGCGTATTACATTGCGAGCGTGC
AGGCGTGTACGAAGTACGTTGTTGCCGAGTTTGCCGTGTGTGCATGGTCA
CAGTTGTGCACGAGCTACTTGGCACCCCAGGACCTTCTTGCGCAAACTGA
AGAGGGTAATCCTGATGTTGATAAGTTTTGTAGGAGAGCGTGACAGCCAC
CAGACGAACGTGTGGTGTTCGTGCTTGTGTAGACTGCCTCTCTTTCCAAG
AATTTTCTGCATTTTCGTGCCACTCACTCATCAACCGCGCTCGCTACGAA
CACATTCGCCGCCCCGGCGTACGCACGTTCGGCACCCCTGCAGAGACGGT
GCCGCAAGCATGTGCGGCCTGGGGTTACACCCTTGTGCTGGGCTCTTGCA
TACACATGTGAGTTTGACGGTGACTGCGTGGGAGTAGTACAAACCGTCGC
CAGGGTTCTACAGTATACGGTACCTGCCGTTTCGAGGTTGCGTGTGTTGC
TTACGCAGCCTTGTGTGGGCGGGTTGACCAACCGAGAAGATTGGGGTTTT
ACTTTCGTGCCGTGCTGCCTTTGCTCAAGCAGGTAGAAGGGTCCAATCTG
TTCTACGGTCTATTCGACGTGCAGCAGTAGATCGCGCGGTGCAACAGTTG
GCGCTAACAGCACAGCAGCAGTTGACAATGGTAGCAACAAAGTGGTCTTA
CTTCCGACTCTTTTCCCGTATATGTCTGACTTTCGCTCTCACGCGCTCAA
CAGGATGGCCTGCACCTACCAACTCAGAAGAAAATACGAGGACGTGGAAC
GTCAAATGGCAATGGCTGGTGCCATTCACGCGAGCGAAGCACCCGAGCTA
CGATAGAGTCAGAACCCGTGCTGCCTGTTCGCCCCAACATTGTGACAGCA
TGGTAACACCACGGGCCTCTCTAGGGCCCCTCAGGCTTGCTTTTTTTTTG
TGCTGGCGTGAAGATGGCAATACTGATAGAATCTGCCATCCCCCTTCTGT
TTGCTGAACACTGCTCTTGGAGCTCTCTTTCGTGATCCCATGCGGCTGGA
CAACCGCTGGACAACCAGCGTGTGTGCCGGGGGTGCTTCATGTGACCATA
TATATGTAGAGCCAGTTCTTGTTGGTGCGGGCTAGTGGGAGAATCAGCGC
GGCCTCATTATCGTTACGGCGGGGCTTACTGTTGTCGAGGCCGGCGGCTT
GCGACAGGCGACATGTCGCGTAATTTGTCCCCCTAGGCAGGTCTTGCACA
CAAATTTGGGAGAAATCAGGATGAGGACGTCATTTTGCTTAGTGTCGGTG
GTGCGCCAACGTTGGAAGCAAATGGTGCGTATTGTTGCCCCGTGCAATCT
ACGTTGGGAGTGTTTTTACGGCACTTGGCTGGGTGGGGTATTGATGGTGT
GCATGGGACGTGCACATGGCAAGGTGGTGTAGTTGGGAGAGCGCTGAATG
TTCGAGGAATAGAAGTAGTGCAAAAAGCAATTCCGTTCTTTGATACACAT
GCGTTTGTTTATCAGAAGTTGCCGCTCATTTTGTCATTCGTTTGTTTGTC
CGGTCTTTCGTATTTGTTCGGTCTACTGCACCTTTCGTCCATGTGGAATT
TACGGAAGTTGGTTGTAGGGGCAATTCTCCCTTCCGTTCACTTCTGTGTT
TCGAGTTTTATTGTTGGTGCCTTTGACGTGCCTAGTATGAGTTAACCTCG
CTGCACACCGGAAACGCCCACGGGGCCCAAGGCATGTAATGTGTTTGGGT
AGGTTGGCACCGCTAATAATAGAGGCGCGTTCAAGCCCACAGCAGTGGCA
CAATTGCGAGCAGCAACGAAGAAGAGGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10337:2462..5140+

>mRNA_Ecto-sp8_S_contig10337.550.1 ID=mRNA_Ecto-sp8_S_contig10337.550.1|Name=mRNA_Ecto-sp8_S_contig10337.550.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10337:2462..5140+ (Ectocarpus species8 EcLAC_412)
ATGCCCTCTGAATCGTGGCCAGAACAACTGGAGCGGGTGAAAGGCAATGG
CGCTTCAATCTTGAAGAAACCCTGCGTCCGCAACGCACTCATGGCAGGCA
TCGGGACAGGAACCCTTATGGGCATCCATAAGTTTCGAGTTGGAAGATGG
CCTGCACCTACCAACTCAGAAGAAAATACGAGGACGTGGAACGTCAAATG
GCAATGGCTGGTGCCATTCACGCGAGCGAAGCACCCGAGCTACGATAGAG
TCAGAACCCGTGCTGCCTGTTCGCCCCAACATTGTGACAGCATGGTAACA
CCACGGGCCTCTCTAGGGCCCCTCAGGCTTGCTTTTTTTTTGTGCTGGCG
TGAAGATGGCAATACTGATAGAATCTGCCATCCCCCTTCTGTTTGCTGA
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