mRNA_Ecto-sp8_S_contig10336.547.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10336.547.1
Unique NamemRNA_Ecto-sp8_S_contig10336.547.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10336.547.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.270e-30
Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 2 
Query:    2 KPDAEVDASMPSVGDVSADVDVKVDNVDAKAPSLETLKPKKGLFGLSFKKLSGKKLKVPDTDVAVPDVSGXXXXXXXXXXXXXXXVDAKL 271
            KPDAEVDA MPSVGDVSAD+DVK+D+VDAKAPS E LKP+KGLFGLSFKKLSGKKLKVPD DVAVPDVSGXXXXXXXXXXXXXXX+DAKL
Sbjct: 1741 KPDAEVDAVMPSVGDVSADIDVKMDDVDAKAPSSEILKPRKGLFGLSFKKLSGKKLKVPDADVAVPDVSGXXXXXXXXXXXXXXXIDAKL 1830
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BLAST of mRNA_Ecto-sp8_S_contig10336.547.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.210e-29
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 2 
Query:    2 KPDAEVDASMPSVGDVSADVDVKVDNVDAKAPSLETLKPKKGLFGLSFKKLSGKKLKVPDTDVAVPDVSGXXXXXXXXXXXXXXXVDAKLPEVS 283
            KPDAEVDASMPSVGDV  DV VK DNVDAK+ SLE  K KKGLFGLSFKKLSGKKLKVPD DVAVPDVS XXXXXXXXXXXXXX VDAKLPEVS
Sbjct: 1365 KPDAEVDASMPSVGDVLGDVGVKGDNVDAKSSSLEPFKLKKGLFGLSFKKLSGKKLKVPDGDVAVPDVSXXXXXXXXXXXXXXXDVDAKLPEVS 1458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10336.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB94_ECTSI1.270e-3090.00Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE7.210e-2987.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10336contigEcto-sp8_S_contig10336:5143..5696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score110.5
Seed ortholog evalue3.8e-22
Seed eggNOG ortholog2880.D8LB94
Model size285
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
Cds size255
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.5126953-CDS-Ecto-sp8_S_contig10336:5142..52531681143132.5126953-CDS-Ecto-sp8_S_contig10336:5142..5253Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10336 5143..5253 -
1681143132.5258446-CDS-Ecto-sp8_S_contig10336:5524..56681681143132.5258446-CDS-Ecto-sp8_S_contig10336:5524..5668Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10336 5525..5668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.5362911-UTR-Ecto-sp8_S_contig10336:5668..56961681143132.5362911-UTR-Ecto-sp8_S_contig10336:5668..5696Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10336 5669..5696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10336.547.1prot_Ecto-sp8_S_contig10336.547.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10336 5143..5668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10336.547.1

>prot_Ecto-sp8_S_contig10336.547.1 ID=prot_Ecto-sp8_S_contig10336.547.1|Name=mRNA_Ecto-sp8_S_contig10336.547.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=85bp
MPSVGDVSADVDVKVDNVDAKAPSLETLKPKKGLFGLSFKKLSGKKLKVP
DTDVAVPDVSGDVSVPDASVDVSVPDVDAKLPEVS
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mRNA from alignment at Ecto-sp8_S_contig10336:5143..5696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10336.547.1 ID=mRNA_Ecto-sp8_S_contig10336.547.1|Name=mRNA_Ecto-sp8_S_contig10336.547.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=554bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10336:5143..5696- (Ectocarpus species8 EcLAC_412)
CAAGCCCGACGCGGAGGTGGACGCGTCCATGCCCTCAGTTGGTGACGTCT
CGGCGGACGTTGATGTGAAGGTGGACAATGTAGACGCGAAGGCGCCTTCC
TTGGAGACCCTGAAGCCCAAGAAGGGTCTGTTCGGGCTATCCTTCAAGAA
GCTCTCCGGCAAGAAACTCAAGGTTAGTTTTGTCGTATTCATGGTCGTGA
CGTTTCGCCATTGCAGGGAAGAACTGAGTTCGAGGACTGTCCATTCCGTC
TCGGAGTCGCCCGGGTTTTTATGGCGATCTGACGCCGACGGCGTCCAGTA
ATCGTGGTACGTTGTCTGTTCTCTGTGCGAGGTCTTCAATGCCTGTTGTG
ACTCCATGTTGCGTCAGTCTATGTTGTGCATATGCATACACGTGGCCTGT
TCCTAAGCGCGCCACTCAAACGCTTTTGTCAACTCTGCCACAGGTCCCGG
ATACCGATGTCGCTGTGCCTGATGTTTCCGGAGATGTGTCGGTGCCGGAC
GCTTCCGTGGACGTGTCCGTGCCAGACGTTGACGCCAAGCTGCCCGAGGT
TTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10336:5143..5696-

>mRNA_Ecto-sp8_S_contig10336.547.1 ID=mRNA_Ecto-sp8_S_contig10336.547.1|Name=mRNA_Ecto-sp8_S_contig10336.547.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10336:5143..5696- (Ectocarpus species8 EcLAC_412)
ATGCCCTCAGTTGGTGACGTCTCGGCGGACGTTGATGTGAAGGTGGACAA
TGTAGACGCGAAGGCGCCTTCCTTGGAGACCCTGAAGCCCAAGAAGGGTC
TGTTCGGGCTATCCTTCAAGAAGCTCTCCGGCAAGAAACTCAAGGTCCCG
GATACCGATGTCGCTGTGCCTGATGTTTCCGGAGATGTGTCGGTGCCGGA
CGCTTCCGTGGACGTGTCCGTGCCAGACGTTGACGCCAAGCTGCCCGAGG
TTTCC
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