mRNA_Ecto-sp8_S_contig10336.546.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10336.546.1
Unique NamemRNA_Ecto-sp8_S_contig10336.546.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10336.546.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.730e-18
Identity = 45/54 (83.33%), Postives = 45/54 (83.33%), Query Frame = -2 
Query:  138 VEVPEFPRPSGEISGSAPELPSVDTCVPSVAVDIPSVGAMPSIDIDAPAVDVGT 299
            VEVPE PRPSGEISGSAPELPSVDT V      IPSVGA PSIDIDAPAVDVGT
Sbjct: 1870 VEVPELPRPSGEISGSAPELPSVDTSVXXXXXXIPSVGAKPSIDIDAPAVDVGT 1923
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10336.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB94_ECTSI7.730e-1883.33Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10336contigEcto-sp8_S_contig10336:4170..4471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size304
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143132.3990667-CDS-Ecto-sp8_S_contig10336:4169..44691681143132.3990667-CDS-Ecto-sp8_S_contig10336:4169..4469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10336 4170..4469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10336.546.1prot_Ecto-sp8_S_contig10336.546.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10336 4170..4469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10336.546.1

>prot_Ecto-sp8_S_contig10336.546.1 ID=prot_Ecto-sp8_S_contig10336.546.1|Name=mRNA_Ecto-sp8_S_contig10336.546.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
DGALASTDETSTSTDGSAPSNVPDGRSTPTEGAPTSTDGTSTPSDGVPTS
TAGASMSIDGIAPTDGMSTATDGTHVSTDGNSGAEPEISPLGRGNSGTST
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mRNA from alignment at Ecto-sp8_S_contig10336:4170..4471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10336.546.1 ID=mRNA_Ecto-sp8_S_contig10336.546.1|Name=mRNA_Ecto-sp8_S_contig10336.546.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=302bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10336:4170..4471+ (Ectocarpus species8 EcLAC_412)
GACGGGGCGCTAGCATCGACAGACGAAACGTCGACGTCGACCGACGGCAG
TGCCCCATCCAACGTGCCCGACGGCAGGTCTACACCCACCGAGGGAGCAC
CGACGTCAACCGACGGTACTTCTACACCCAGCGATGGGGTGCCGACATCG
ACCGCAGGGGCATCGATGTCGATCGATGGCATTGCACCCACAGACGGGAT
GTCAACCGCAACCGACGGCACACACGTGTCAACAGACGGCAACTCCGGCG
CAGAGCCGGAAATTTCCCCGCTAGGGCGAGGAAATTCAGGTACCTCGACG
CC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10336:4170..4471+

>mRNA_Ecto-sp8_S_contig10336.546.1 ID=mRNA_Ecto-sp8_S_contig10336.546.1|Name=mRNA_Ecto-sp8_S_contig10336.546.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10336:4170..4471+ (Ectocarpus species8 EcLAC_412)
GACGGGGCGCTAGCATCGACAGACGAAACGTCGACGTCGACCGACGGCAG
TGCCCCATCCAACGTGCCCGACGGCAGGTCTACACCCACCGAGGGAGCAC
CGACGTCAACCGACGGTACTTCTACACCCAGCGATGGGGTGCCGACATCG
ACCGCAGGGGCATCGATGTCGATCGATGGCATTGCACCCACAGACGGGAT
GTCAACCGCAACCGACGGCACACACGTGTCAACAGACGGCAACTCCGGCG
CAGAGCCGGAAATTTCCCCGCTAGGGCGAGGAAATTCAGGTACCTCGACG
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