mRNA_Ecto-sp8_S_contig103304.534.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103304.534.1
Unique NamemRNA_Ecto-sp8_S_contig103304.534.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103304.534.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.790e-42
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 KYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGAST 234
            KYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGAST
Sbjct:  181 KYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGAST 258
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BLAST of mRNA_Ecto-sp8_S_contig103304.534.1 vs. uniprot
Match: A0A7S2EXK5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV)

HSP 1 Score: 49.7 bits (117), Expect = 4.410e-5
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 KYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEH---GDA-QESWLLAPSEAAWNVLTAGRVDIQRALA 195
            KYR++K+ NA F R++G +PGG   M A GF VE    GDA +E + L PS  AW  L A +  +  ALA
Sbjct:  215 KYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALA 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103304.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX4_ECTSI2.790e-42100.00Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S2EXK5_TRICV4.410e-545.71Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103304contigEcto-sp8_S_contig103304:3..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score153.3
Seed ortholog evalue4.7e-35
Seed eggNOG ortholog2880.D8LAX4
Model size234
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0070647,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons2
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
Cds size234
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.7831128-CDS-Ecto-sp8_S_contig103304:2..471681143131.7831128-CDS-Ecto-sp8_S_contig103304:2..47Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103304 3..47 +
1681143131.7956758-CDS-Ecto-sp8_S_contig103304:338..5271681143131.7956758-CDS-Ecto-sp8_S_contig103304:338..527Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103304 339..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103304.534.1prot_Ecto-sp8_S_contig103304.534.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103304 3..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103304.534.1

>prot_Ecto-sp8_S_contig103304.534.1 ID=prot_Ecto-sp8_S_contig103304.534.1|Name=mRNA_Ecto-sp8_S_contig103304.534.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=78bp
KYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAW
NVLTAGRVDIQRALATLPGAPAAAGAST
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mRNA from alignment at Ecto-sp8_S_contig103304:3..527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103304.534.1 ID=mRNA_Ecto-sp8_S_contig103304.534.1|Name=mRNA_Ecto-sp8_S_contig103304.534.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103304:3..527+ (Ectocarpus species8 EcLAC_412)
AAGTACCGCAAGATCAAGAGAGCAAACGCGGGGTTCAGCCGGAAGGTGGG
GTGGGGGCGCGCGGTCTCAAGCGTTATCTTACGTTTCGTGTGGAGATGCT
GCCGTGCCGGTTGGGCGCACGTGATCGTTGGTTTGCTGTGTTGGGTATTG
ATGTAATAGTACGTCCGCATCACCACCGTTTGGTGTGTTTTGCTTATGGA
CTTCGGCGAGGCGCTTCCGACAACTTTGCGGGGAGTCAACCGCGTCTCTT
TTCACCGTCGCCATGCTGCTCAGTGATCGTACATCACCTTTCCCGTTGCA
TGTAACGCCCCTCTCCTCTCCGTACGTTATGTACAGGTTGGAGCGGTGCC
GGGCGGAGAGGCTTGCATGCGAGCCCTCGGATTCGTCGAGCACGGGGATG
CGCAAGAGAGCTGGCTCCTTGCCCCCAGCGAAGCGGCCTGGAACGTTCTT
ACCGCCGGCCGCGTAGACATCCAGAGAGCTCTGGCGACCCTCCCGGGAGC
GCCGGCGGCTGCTGGTGCGTCCACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103304:3..527+

>mRNA_Ecto-sp8_S_contig103304.534.1 ID=mRNA_Ecto-sp8_S_contig103304.534.1|Name=mRNA_Ecto-sp8_S_contig103304.534.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103304:3..527+ (Ectocarpus species8 EcLAC_412)
AAGTACCGCAAGATCAAGAGAGCAAACGCGGGGTTCAGCCGGAAGGTTGG
AGCGGTGCCGGGCGGAGAGGCTTGCATGCGAGCCCTCGGATTCGTCGAGC
ACGGGGATGCGCAAGAGAGCTGGCTCCTTGCCCCCAGCGAAGCGGCCTGG
AACGTTCTTACCGCCGGCCGCGTAGACATCCAGAGAGCTCTGGCGACCCT
CCCGGGAGCGCCGGCGGCTGCTGGTGCGTCCACC
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