mRNA_Ecto-sp8_S_contig10329.532.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10329.532.1
Unique NamemRNA_Ecto-sp8_S_contig10329.532.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.610e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    4 SQELHELSCLVVDELHMIGDGGRGQILELLLAK 102
            + ELHELSCLVVDELHMIGDGGRGQILELLLAK
Sbjct:  204 ADELHELSCLVVDELHMIGDGGRGQILELLLAK 236
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: D2VMZ4_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMZ4_NAEGR)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 22/32 (68.75%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    7 QELHELSCLVVDELHMIGDGGRGQILELLLAK 102
            + +HEL C+VVDELHMIG+GGRGQ+LE L++K
Sbjct:  270 ERIHELGCVVVDELHMIGEGGRGQLLEQLISK 301
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: A0A428XJW7_9ACTN (DEAD/DEAH box helicase n=2 Tax=Actinoplanes sp. ATCC 53533 TaxID=1288362 RepID=A0A428XJW7_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 5.210e-6
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 QELHELSCLVVDELHMIGDGGRGQILELLLAKARGE 114
            Q L E+ CLVVDE+H++GD  RG +LE LLA+ RGE
Sbjct:  328 QALAEVGCLVVDEIHLLGDASRGPVLEALLARVRGE 363
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: A0A2P2FEU2_9PSEU (DEAD/DEAH box helicase n=2 Tax=Amycolatopsis lurida TaxID=31959 RepID=A0A2P2FEU2_9PSEU)

HSP 1 Score: 49.7 bits (117), Expect = 9.760e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 LSQELHELSCLVVDELHMIGDGGRGQILELLLAKARGERRAR 126
            L + L E+SCL+VDE+H++GD  RG +LE LLA+ RG  + R
Sbjct:  225 LREALAEVSCLIVDEIHLLGDAERGPVLEALLARMRGNNQVR 266
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: R7TYW9_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TYW9_CAPTE)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    7 QELHELSCLVVDELHMIGDGGRGQILELLLAKAR 108
            +E+ +L CLVVDELHM+GD  RG +LELLL K R
Sbjct:  123 REMAQLGCLVVDELHMVGDAQRGYLLELLLTKVR 156
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: UPI0010547C18 (helicase POLQ-like n=1 Tax=Gouania willdenowi TaxID=441366 RepID=UPI0010547C18)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    4 SQELHELSCLVVDELHMIGDGGRGQILELLLAK 102
            +  L+EL  LVVDELHM+GDGGRG +LE++L+K
Sbjct:  342 NNRLNELGLLVVDELHMLGDGGRGAVLEMILSK 374
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: UPI001CFEFAF0 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFEFAF0)

HSP 1 Score: 49.3 bits (116), Expect = 1.330e-5
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   13 LHELSCLVVDELHMIGDGGRGQILELLLAK 102
            +HEL C+V+DELHM+G+G RGQ+LE LL K
Sbjct:  268 IHELGCVVIDELHMLGEGDRGQLLENLLTK 297
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: UPI001C3220C5 (ATP-dependent RNA helicase DbpA n=2 Tax=Amycolatopsis sp. CA-230715 TaxID=2745196 RepID=UPI001C3220C5)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 LSQELHELSCLVVDELHMIGDGGRGQILELLLAKARGE 114
            L + L E+ CL+VDE+H++GD  RG +LE LLA+ RGE
Sbjct:  269 LREALTEVGCLIVDEIHLLGDPARGPVLEALLARMRGE 306
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: A0A151ZAC4_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAC4_9MYCE)

HSP 1 Score: 48.5 bits (114), Expect = 2.500e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   10 ELHELSCLVVDELHMIGDGGRGQILELLLAK 102
            ++HEL C+V+DELHM+GD  RG +LELL++K
Sbjct:  385 KIHELGCVVIDELHMVGDNDRGILLELLISK 415
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BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Match: A0A6A5BSQ6_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BSQ6_NAEFO)

HSP 1 Score: 48.5 bits (114), Expect = 2.500e-5
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   13 LHELSCLVVDELHMIGDGGRGQILELLLAK 102
            +HEL C+V+DELHM+G+G RGQ+LE L+ K
Sbjct:  269 IHELGCVVIDELHMLGEGDRGQLLEHLITK 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10329.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM15_ECTSI2.610e-1193.94DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
D2VMZ4_NAEGR3.110e-768.75Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A428XJW7_9ACTN5.210e-661.11DEAD/DEAH box helicase n=2 Tax=Actinoplanes sp. AT... [more]
A0A2P2FEU2_9PSEU9.760e-652.38DEAD/DEAH box helicase n=2 Tax=Amycolatopsis lurid... [more]
R7TYW9_CAPTE1.330e-564.71Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI0010547C181.330e-563.64helicase POLQ-like n=1 Tax=Gouania willdenowi TaxI... [more]
UPI001CFEFAF01.330e-566.67uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
UPI001C3220C51.830e-555.26ATP-dependent RNA helicase DbpA n=2 Tax=Amycolatop... [more]
A0A151ZAC4_9MYCE2.500e-561.29Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A6A5BSQ6_NAEFO2.500e-563.33Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10329contigEcto-sp8_S_contig10329:4..129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score64.7
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog2880.D7FM15
Model size126
KEGG koko:K02349
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006287,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
Exons1
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
Cds size126
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.3998709-CDS-Ecto-sp8_S_contig10329:3..1291681143131.3998709-CDS-Ecto-sp8_S_contig10329:3..129Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10329 4..129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10329.532.1prot_Ecto-sp8_S_contig10329.532.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10329 4..129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10329.532.1

>prot_Ecto-sp8_S_contig10329.532.1 ID=prot_Ecto-sp8_S_contig10329.532.1|Name=mRNA_Ecto-sp8_S_contig10329.532.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=42bp
LSQELHELSCLVVDELHMIGDGGRGQILELLLAKARGERRAR
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mRNA from alignment at Ecto-sp8_S_contig10329:4..129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10329.532.1 ID=mRNA_Ecto-sp8_S_contig10329.532.1|Name=mRNA_Ecto-sp8_S_contig10329.532.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10329:4..129+ (Ectocarpus species8 EcLAC_412)
CTCTCGCAGGAGCTGCACGAGCTGTCGTGTCTCGTGGTGGACGAGCTGCA
CATGATCGGGGACGGCGGACGAGGTCAGATACTGGAGCTCCTGCTGGCTA
AGGCAAGAGGAGAGCGCAGAGCTCGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10329:4..129+

>mRNA_Ecto-sp8_S_contig10329.532.1 ID=mRNA_Ecto-sp8_S_contig10329.532.1|Name=mRNA_Ecto-sp8_S_contig10329.532.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10329:4..129+ (Ectocarpus species8 EcLAC_412)
CTCTCGCAGGAGCTGCACGAGCTGTCGTGTCTCGTGGTGGACGAGCTGCA
CATGATCGGGGACGGCGGACGAGGTCAGATACTGGAGCTCCTGCTGGCTA
AGGCAAGAGGAGAGCGCAGAGCTCGC
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