mRNA_Ecto-sp8_S_contig103190.522.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103190.522.1
Unique NamemRNA_Ecto-sp8_S_contig103190.522.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103190.522.1 vs. uniprot
Match: D7G7G0_ECTSI (Alpha-SNAP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G0_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-21
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    4 FHKAIAIYNESGRFQQAGKMLQEVGEIYEAEGMTDDAVNSLQQASEYLA 150
            F KAIAIYNESGRFQQAGKMLQEVGEIYEAEGMTDDAVNSLQQASEYLA
Sbjct:  102 FLKAIAIYNESGRFQQAGKMLQEVGEIYEAEGMTDDAVNSLQQASEYLA 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103190.522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7G0_ECTSI1.260e-2197.96Alpha-SNAP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103190contigEcto-sp8_S_contig103190:320..469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score93.2
Seed ortholog evalue3.7e-17
Seed eggNOG ortholog2880.D7G7G0
Preferred nameNAPB
Model size150
KEGG koko:K15296
KEGG Pathwayko04138,ko04721,map04138,map04721
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000149,GO:0000278,GO:0000281,GO:0000910,GO:0001505,GO:0001654,GO:0001671,GO:0001745,GO:0002009,GO:0002090,GO:0002165,GO:0003674,GO:0005483,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007274,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010646,GO:0010807,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0017156,GO:0017157,GO:0017158,GO:0019222,GO:0019898,GO:0019905,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030054,GO:0030100,GO:0030154,GO:0030182,GO:0030234,GO:0030424,GO:0031090,GO:0031201,GO:0031323,GO:0031410,GO:0031629,GO:0031982,GO:0032386,GO:0032501,GO:0032502,GO:0032781,GO:0032879,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0034214,GO:0034613,GO:0034622,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035249,GO:0035295,GO:0035494,GO:0036465,GO:0040007,GO:0042144,GO:0042886,GO:0042995,GO:0043005,GO:0043085,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043462,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044248,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045026,GO:0045055,GO:0045176,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0046928,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048259,GO:0048280,GO:0048284,GO:0048488,GO:0048489,GO:0048513,GO:0048526,GO:0048563,GO:0048569,GO:0048589,GO:0048592,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0051046,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051301,GO:0051336,GO:0051345,GO:0051588,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055044,GO:0060255,GO:0060322,GO:0060341,GO:0060429,GO:0060560,GO:0060562,GO:0060589,GO:0060590,GO:0060627,GO:0061024,GO:0061025,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070044,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090114,GO:0090174,GO:0090596,GO:0097458,GO:0097479,GO:0097480,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098772,GO:0098793,GO:0098796,GO:0098805,GO:0098916,GO:0099003,GO:0099177,GO:0099500,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0150034,GO:1902803,GO:1903047,GO:1903305,GO:1903530,GO:2000300
Exons1
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsKOG1586@1,KOG1586@2759
Cds size150
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.5722735-CDS-Ecto-sp8_S_contig103190:319..4691681143130.5722735-CDS-Ecto-sp8_S_contig103190:319..469Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103190 320..469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103190.522.1prot_Ecto-sp8_S_contig103190.522.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103190 320..469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103190.522.1

>prot_Ecto-sp8_S_contig103190.522.1 ID=prot_Ecto-sp8_S_contig103190.522.1|Name=mRNA_Ecto-sp8_S_contig103190.522.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=50bp
IFHKAIAIYNESGRFQQAGKMLQEVGEIYEAEGMTDDAVNSLQQASEYLA
back to top

mRNA from alignment at Ecto-sp8_S_contig103190:320..469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103190.522.1 ID=mRNA_Ecto-sp8_S_contig103190.522.1|Name=mRNA_Ecto-sp8_S_contig103190.522.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103190:320..469- (Ectocarpus species8 EcLAC_412)
ATTTTCCACAAGGCGATTGCCATCTACAACGAGTCGGGGCGGTTCCAGCA
GGCGGGCAAGATGCTGCAGGAAGTCGGAGAGATCTACGAGGCGGAAGGAA
TGACCGATGATGCGGTCAACTCCCTGCAACAGGCGTCAGAATACCTTGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103190:320..469-

>mRNA_Ecto-sp8_S_contig103190.522.1 ID=mRNA_Ecto-sp8_S_contig103190.522.1|Name=mRNA_Ecto-sp8_S_contig103190.522.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103190:320..469- (Ectocarpus species8 EcLAC_412)
ATTTTCCACAAGGCGATTGCCATCTACAACGAGTCGGGGCGGTTCCAGCA
GGCGGGCAAGATGCTGCAGGAAGTCGGAGAGATCTACGAGGCGGAAGGAA
TGACCGATGATGCGGTCAACTCCCTGCAACAGGCGTCAGAATACCTTGCG
back to top