mRNA_Ecto-sp8_S_contig103049.501.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103049.501.1
Unique NamemRNA_Ecto-sp8_S_contig103049.501.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.390e-34
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGE+
Sbjct:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEI 61
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: A0A7S2XUN8_9STRA (Coatomer subunit epsilon n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUN8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.920e-24
Identity = 43/61 (70.49%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M+EPDDL+TLRNHFWLG+YQ+AI+EGS LGRL   L +E+DEF+YRSY+ALGQ+ +VL EV
Sbjct:    1 MAEPDDLYTLRNHFWLGNYQMAISEGSSLGRLRSELALEKDEFVYRSYVALGQYQVVLSEV 61
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: F0YDB8_AURAN (Coatomer subunit epsilon n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDB8_AURAN)

HSP 1 Score: 92.8 bits (229), Expect = 3.320e-21
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M+EPD+L+TLRN FWLG++ +AIAEG+ L RL + L VERDEF+YRSY+ LGQ+ +V+GEV
Sbjct:    1 MAEPDELYTLRNRFWLGNFSMAIAEGNQLSRLSDVLAVERDEFVYRSYIGLGQYGLVIGEV 61
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: A0A7S2BS69_9STRA (Coatomer subunit epsilon n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BS69_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.460e-20
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M+EPDDL+TLRN+FWLG+YQ A+AEGS L RL + L++E  EFI+RSY+A+GQ +IVL EV
Sbjct:   10 MNEPDDLYTLRNNFWLGNYQRAVAEGSSLSRLSDPLKIECKEFIFRSYIAMGQCNIVLDEV 70
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: A0A7R9UFD7_9STRA (Coatomer subunit epsilon n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.380e-20
Identity = 37/61 (60.66%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M++PD+L+TLRNHF++G+YQLAI+E + L RLP  L+ E+DEF+YRSY+A+GQ  +VLGE+
Sbjct:    1 MADPDELYTLRNHFYVGNYQLAISEATNLNRLPPNLKAEKDEFLYRSYIAMGQPRVVLGEI 61
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: A0A7S2RZ95_9STRA (Coatomer subunit epsilon n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ95_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.820e-20
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M+EPD+L++LRN FWLG++Q A++EGS L RLPE L++E  EF+YRSY+ALGQ +IVL EV
Sbjct:   13 MTEPDELYSLRNFFWLGAWQRAVSEGSSLTRLPEPLKIESREFVYRSYVALGQHNIVLSEV 73
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: A0A7S2F9R0_9STRA (Coatomer subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9R0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.060e-19
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M+EPDDL+TLR  FWLG+YQ    E S L RLPEALR+E  EF+YRSY+A+GQ SIVL E+
Sbjct:    1 MAEPDDLYTLRTLFWLGNYQRVPVEASSLNRLPEALRIEVKEFVYRSYIAMGQHSIVLDEI 61
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: I0Z459_COCSC (Coatomer subunit epsilon n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z459_COCSC)

HSP 1 Score: 83.2 bits (204), Expect = 1.070e-17
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            MSEPD LF+LRNHF+LG+YQ AIAE S L  L EA ++ERD F+YRSY+ LG + +V+ EV
Sbjct:    1 MSEPDLLFSLRNHFYLGAYQAAIAEASDLEGLSEAEKIERDSFVYRSYIELGSYELVINEV 61
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: A0A7S4A6L7_9STRA (Coatomer subunit epsilon n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6L7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.370e-17
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    4 SEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            ++PD+L+TLRN FWLGS+Q AI EG  L RL + L++ERDEF+YRSY+  GQ+++V+ EV
Sbjct:    4 TDPDELYTLRNLFWLGSFQQAINEGGRLNRLTDELKIERDEFVYRSYVGQGQYALVISEV 63
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BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Match: H3GAC4_PHYRM (Coatomer subunit epsilon n=10 Tax=Phytophthora TaxID=4783 RepID=H3GAC4_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 2.140e-16
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLALGQFSIVLGEV 183
            M+EPDDLFTL+N  W+G+YQ A++EG+ L  + EALR ERD ++YR+ LALG FS+VL  V
Sbjct:    1 MAEPDDLFTLKNQLWVGNYQNALSEGAMLTHVSEALRHERDVYVYRAQLALGNFSVVLQNV 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103049.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXM7_ECTSI3.390e-3498.36Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2XUN8_9STRA3.920e-2470.49Coatomer subunit epsilon n=1 Tax=Fibrocapsa japoni... [more]
F0YDB8_AURAN3.320e-2163.93Coatomer subunit epsilon n=1 Tax=Aureococcus anoph... [more]
A0A7S2BS69_9STRA4.460e-2065.57Coatomer subunit epsilon n=1 Tax=Dictyocha speculu... [more]
A0A7R9UFD7_9STRA5.380e-2060.66Coatomer subunit epsilon n=1 Tax=Pinguiococcus pyr... [more]
A0A7S2RZ95_9STRA8.820e-2063.93Coatomer subunit epsilon n=1 Tax=Rhizochromulina m... [more]
A0A7S2F9R0_9STRA2.060e-1965.57Coatomer subunit epsilon n=1 Tax=Florenciella parv... [more]
I0Z459_COCSC1.070e-1762.30Coatomer subunit epsilon n=2 Tax=Coccomyxa TaxID=4... [more]
A0A7S4A6L7_9STRA1.370e-1758.33Coatomer subunit epsilon n=1 Tax=Pelagomonas calce... [more]
H3GAC4_PHYRM2.140e-1659.02Coatomer subunit epsilon n=10 Tax=Phytophthora Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103049contigEcto-sp8_S_contig103049:197..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score127.9
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog2880.D7FXM7
Preferred nameCOPE1
Model size183
KEGG koko:K17268
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006900,GO:0006901,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1990841
Exons1
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG3081@1,KOG3081@2759
Cds size183
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.545488-CDS-Ecto-sp8_S_contig103049:196..3791681143129.545488-CDS-Ecto-sp8_S_contig103049:196..379Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103049 197..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103049.501.1prot_Ecto-sp8_S_contig103049.501.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103049 197..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103049.501.1

>prot_Ecto-sp8_S_contig103049.501.1 ID=prot_Ecto-sp8_S_contig103049.501.1|Name=mRNA_Ecto-sp8_S_contig103049.501.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
MSEPDDLFTLRNHFWLGSYQLAIAEGSGLGRLPEALRVERDEFIYRSYLA
LGQFSIVLGEV
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mRNA from alignment at Ecto-sp8_S_contig103049:197..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103049.501.1 ID=mRNA_Ecto-sp8_S_contig103049.501.1|Name=mRNA_Ecto-sp8_S_contig103049.501.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103049:197..379+ (Ectocarpus species8 EcLAC_412)
ATGTCAGAGCCCGATGATTTGTTCACGCTGCGCAACCACTTCTGGCTGGG
GAGCTATCAACTCGCGATAGCGGAGGGATCAGGGCTTGGCCGCTTGCCCG
AGGCGCTCAGAGTGGAAAGGGACGAGTTCATCTACCGGTCCTACCTCGCC
CTGGGACAGTTCAGCATCGTTCTTGGAGAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103049:197..379+

>mRNA_Ecto-sp8_S_contig103049.501.1 ID=mRNA_Ecto-sp8_S_contig103049.501.1|Name=mRNA_Ecto-sp8_S_contig103049.501.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103049:197..379+ (Ectocarpus species8 EcLAC_412)
ATGTCAGAGCCCGATGATTTGTTCACGCTGCGCAACCACTTCTGGCTGGG
GAGCTATCAACTCGCGATAGCGGAGGGATCAGGGCTTGGCCGCTTGCCCG
AGGCGCTCAGAGTGGAAAGGGACGAGTTCATCTACCGGTCCTACCTCGCC
CTGGGACAGTTCAGCATCGTTCTTGGAGAGGTT
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