mRNA_Ecto-sp8_S_contig1030.495.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1030.495.1
Unique NamemRNA_Ecto-sp8_S_contig1030.495.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1030.495.1 vs. uniprot
Match: D7G0A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.320e-19
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  115 LEKSVVPSRVSRNERGGGCRPPGAEAERAMRSRGQTTQRACQPEAKDVTRRRSRRTL 285
            LEKSVVPS VSRNERG GCRPPGAEAE+AMRSRGQT QRACQ EAKDV RRR RR L
Sbjct:   60 LEKSVVPSTVSRNERGEGCRPPGAEAEQAMRSRGQTNQRACQQEAKDVARRRRRRAL 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1030.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A9_ECTSI2.320e-1985.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1030contigEcto-sp8_S_contig1030:15013..17377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.1508904-CDS-Ecto-sp8_S_contig1030:15012..151221681143129.1508904-CDS-Ecto-sp8_S_contig1030:15012..15122Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1030 15013..15122 +
1681143129.1602278-CDS-Ecto-sp8_S_contig1030:17197..173751681143129.1602278-CDS-Ecto-sp8_S_contig1030:17197..17375Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1030 17198..17375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1030.495.1prot_Ecto-sp8_S_contig1030.495.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1030 15013..17375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1030.495.1

>prot_Ecto-sp8_S_contig1030.495.1 ID=prot_Ecto-sp8_S_contig1030.495.1|Name=mRNA_Ecto-sp8_S_contig1030.495.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=96bp
NKQQAVSSVRKQPAASDSRSKAEDAKGEGARQVEEQMLLEKSVVPSRVSR
NERGGGCRPPGAEAERAMRSRGQTTQRACQPEAKDVTRRRSRRTLS
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mRNA from alignment at Ecto-sp8_S_contig1030:15013..17377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1030.495.1 ID=mRNA_Ecto-sp8_S_contig1030.495.1|Name=mRNA_Ecto-sp8_S_contig1030.495.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2365bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1030:15013..17377+ (Ectocarpus species8 EcLAC_412)
AACAAGCAGCAGGCCGTTTCCTCCGTACGGAAACAGCCAGCCGCGAGTGA
TTCGCGCTCCAAAGCCGAGGACGCTAAGGGAGAGGGAGCTCGACAGGTCG
AGGAACAGATGTGAGTGTGTGTGGCCAGCTTGTGTTCGGAATCGTGTGGT
CTTGTTTACGCATGGCCGGTATCACGCGAAAAAGCAGCGAAGGCGTGCAA
GGTGCAGGGTTGGTCATGAAAACGGAATTTTTTTCTCATGCATACCTTGA
ACAACAACCGACCAGACAATTTTTGGTGGTGAAGCCCTGTGGAGTCATGC
AGCCCGAGCTGCGTCAGGTCGCATGTGGTGTGCTGCGGTCCTCCTCGTCC
CGCCAGCTTGCCCGGTAGCACCGCGTGCCGCATCACATATTTCGAGGTTG
GTTGTGTCGGCATTGTGCGCGTTCAATTTTTTCCGCTCAAATCCGAACGA
ACAAACCCGTGGGCGGTGGGTGCACTCTGCTACAAGGCGGTTGCTACTGC
TTTTGGGTATGTATACCCTGCAAGCAGCGCTGCCTCTAAAAAATGTCGTG
CATGCGACTACATCCAGAGGCGAGAAGAGAAGCTCTGCAATCATCGCCAC
GGCCCGCATTAATCGCTCTCATTCACCCGAGAGTTCCATTCTGGGCACAA
CACCTTGGAAGCGAGCGGGGCAATCGCAGTTGTTGCCCCAGACCTGCAGT
CGTCACCAACCACAGCAGCAACAGCAGCAGCAGATCTTGGGCTGCACATA
CAATGTCATCTCATGCTTCAAGTTGTACCATATGTAGGAGGGGACGAGCG
CCAAAACGCGGCTAGGTCCCGACAGCACCCAAGAGTAAGAGCTGGATCAG
GCCCCTCTTATATATCTCTTCCTAGATATGATATATCTCTTCGGTATTGC
CGTATACTCATCTCTTCGGTGCGTATTGCCGGATGCGCGTCATGCCAATA
CAATCGTATGGGAACCAAAAAAGTTAAATGATCCGCTCGCTCATGCACAC
CATCTTCTTTCCCTGTGACCGAATTGACCGAAAAATTGCCGAAAAAGAAA
GGTCCGAACTCAGAGCCTTGTACGCTCTATGCAAGTGTTAAAGGTGGACA
AATGTGCGCGTTCGTCTATCTATCTATGTACAATTTCTCGTCTCCGCAAA
TCATTGGGGCCGTTCCTCTCTTCGAAAATTCAACTTAAAAATACAATCTG
CGTAAACTCGAGGTATGTAACATGTTCGTATGCCACCAAATTGATTACCC
CGAAATATTGGTGTCGGTGTTATCTTATATAATGTGCAACCTATATAATA
ATAAATAGGTGCGCGTGCATTGCAATGTACGGCGGATAGATGGAGCAACA
ATGTATGTCAGTGATGCGTTCGTGTGCAACGGCCCGACACACCACCACAA
CACCAGTGCTGGTCGTGCCTGCACTGACCACGTACTTGTGTATGATAGCA
GGGACCAACTTTTTTTCAAAAATTCAAGGGTGATTCGGTCCCCCGTGCGC
GTCGGCCTGCTATGTAGTGGATTGATGGTCCATACGCACGAATCTCCACC
GGTGACATCATCATCACAGGACAACTGACATTATTTGTTCCTGCCTGGCG
CGTGGGTTCGCTGGAAGGTTTGGCGTGTCTCATGCCCTGTAGCATGATGC
CTGTCGTCGGGATAATATTTGTTATTTCCTTCCGCATTTCTTTACAATCT
AGGAGAGCAAACGAACTTGCGTTTGTTTGCGGAGCCGAGGGAGTGCGAAC
CTGCGAAATACCGCCGTGGGTGACACAAGGCATCACACACACCCTGGACT
GATTTTCGTAGACCGTTTTACTCCACACCAAAAAGAGTGACGATGCGGAA
AATAACCGCGTTTGGGGCATCTCGTTGAGAGTTTTCCGAAACTTATCGTT
TGATTTATTCATCCTCTTCGTAATCGAGCTTTGAAAATCTGTGCAGGGGG
GCGTGCTATCTACGTCACATTCGGTAAGACCACCTGCAAGGTATGCCCGC
ACCGTTTAACTCTCTCTCTCTACTCCCCCTCGCAGCACAGCCTTTGGATG
CCTTGATACCGGCTTTGATTTCATTTCAGCCACGTCGATGCTCCCTCTCC
CTCCGCTTTCTGGCCTCCCCCCCCCCCCTATCTTCACGCCATCCCGACTG
CCTGCCTCTTGCGGTGCTTGAAATTAATTCCACAGGCTACTTGAGAAGAG
TGTGGTCCCTTCGAGGGTTTCCAGAAACGAACGCGGAGGCGGTTGCCGGC
CTCCAGGGGCGGAAGCAGAACGAGCGATGCGAAGCAGGGGACAGACGACC
CAGCGTGCCTGCCAGCCGGAGGCGAAAGACGTTACGCGGAGGAGGAGCAG
GAGAACACTTTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1030:15013..17377+

>mRNA_Ecto-sp8_S_contig1030.495.1 ID=mRNA_Ecto-sp8_S_contig1030.495.1|Name=mRNA_Ecto-sp8_S_contig1030.495.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1030:15013..17377+ (Ectocarpus species8 EcLAC_412)
AACAAGCAGCAGGCCGTTTCCTCCGTACGGAAACAGCCAGCCGCGAGTGA
TTCGCGCTCCAAAGCCGAGGACGCTAAGGGAGAGGGAGCTCGACAGGTCG
AGGAACAGATGCTACTTGAGAAGAGTGTGGTCCCTTCGAGGGTTTCCAGA
AACGAACGCGGAGGCGGTTGCCGGCCTCCAGGGGCGGAAGCAGAACGAGC
GATGCGAAGCAGGGGACAGACGACCCAGCGTGCCTGCCAGCCGGAGGCGA
AAGACGTTACGCGGAGGAGGAGCAGGAGAACACTTTCG
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