mRNA_Ecto-sp8_S_contig10288.480.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10288.480.1
Unique NamemRNA_Ecto-sp8_S_contig10288.480.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10288.480.1 vs. uniprot
Match: D8LIG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG5_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 5.110e-110
Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 1 
Query:    1 MKTAALSLVALTCSCANAFTVSPAALRTQARGRSNTATSSTSLRMGWSLKEADFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNNAERMKLKAEVLAKADIPTNPSLYKTWTEKYGYGRFFPVYVDKSGLSDDTPAPAKASKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAAAPKPQGNINNLPKAL 696
            MKTAALSLVALTCSCANAFTVSPAALRTQARGRSNTATSSTSLRMGWSLKEADFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNNAERMKLKAEVLAKADIPTNPSLYKTWTEKYGYGRFFPVYVDKSGLSDDTPAPAKA+KTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAAAPKPQGNINNLPKAL
Sbjct:    1 MKTAALSLVALTCSCANAFTVSPAALRTQARGRSNTATSSTSLRMGWSLKEADFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNNAERMKLKAEVLAKADIPTNPSLYKTWTEKYGYGRFFPVYVDKSGLSDDTPAPAKAAKTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAAAPKPQGNINNLPKAL 232
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BLAST of mRNA_Ecto-sp8_S_contig10288.480.1 vs. uniprot
Match: A0A7S2V2P5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.580e-29
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:  118 STSLRMGWSL---KEADFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNNAERMKLKAEVLAKADIPT--NPSLYKTWTEKYGYGRFFPVYVDKSG 432
            STSL MG +     + +F+PSE WL +YLGE GLRY M+KT +E+  EGDY LL+++FGQTSNN  R++LK    AKA+  T       ++W  K+GYGRFFP YVDKSG
Sbjct:   32 STSLNMGGASVGGSDEEFVPSETWLADYLGENGLRYAMNKTPQELETEGDYPLLDRLFGQTSNNGARLELKKVARAKANSLTAEQEEEKQSWLSKFGYGRFFPAYVDKSG 141
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BLAST of mRNA_Ecto-sp8_S_contig10288.480.1 vs. uniprot
Match: A0A835YMI2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.430e-22
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  133 MGWSLKEADFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNNAERMKLKAEVLAKADIPTNPSLYKTWTEKYGYGRFFPVYVDKSGLSDDTPAP 456
            M  +L+  DF+PSE ++ +YLG+ G+RY M KT +E+  EGDY   E IFGQTSNNA +M+LK +    A         K W  KYGY R FP YVD SG      AP
Sbjct:   34 MKMALRPDDFVPSELFMQQYLGQDGIRYSMGKTPQEIETEGDYGFFEAIFGQTSNNAAKMELKKQARESAKKVLYTERAKEWLVKYGYPRAFPAYVDNSGEDAAESAP 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10288.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIG5_ECTSI5.110e-11099.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V2P5_9STRA2.580e-2953.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YMI2_9STRA3.430e-2247.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10288contigEcto-sp8_S_contig10288:1793..6483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size699
Hectar predicted targeting categorychloroplast
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003760.1
Cds size699
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10288.480.1prot_Ecto-sp8_S_contig10288.480.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10288 1793..6483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.8907528-CDS-Ecto-sp8_S_contig10288:1792..18721681143127.8907528-CDS-Ecto-sp8_S_contig10288:1792..1872Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10288 1793..1872 +
1681143127.9020336-CDS-Ecto-sp8_S_contig10288:3589..37621681143127.9020336-CDS-Ecto-sp8_S_contig10288:3589..3762Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10288 3590..3762 +
1681143127.909966-CDS-Ecto-sp8_S_contig10288:4503..46161681143127.909966-CDS-Ecto-sp8_S_contig10288:4503..4616Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10288 4504..4616 +
1681143127.9172843-CDS-Ecto-sp8_S_contig10288:5117..52251681143127.9172843-CDS-Ecto-sp8_S_contig10288:5117..5225Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10288 5118..5225 +
1681143127.9245858-CDS-Ecto-sp8_S_contig10288:5760..58981681143127.9245858-CDS-Ecto-sp8_S_contig10288:5760..5898Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10288 5761..5898 +
1681143127.9317982-CDS-Ecto-sp8_S_contig10288:6396..64831681143127.9317982-CDS-Ecto-sp8_S_contig10288:6396..6483Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10288 6397..6483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10288.480.1

>prot_Ecto-sp8_S_contig10288.480.1 ID=prot_Ecto-sp8_S_contig10288.480.1|Name=mRNA_Ecto-sp8_S_contig10288.480.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=233bp
MKTAALSLVALTCSCANAFTVSPAALRTQARGRSNTATSSTSLRMGWSLK
EADFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNN
AERMKLKAEVLAKADIPTNPSLYKTWTEKYGYGRFFPVYVDKSGLSDDTP
APAKASKTVAPKKAPAKKAAAKAAPRAAAVKASSRPAAKSAPKAKAAPKK
AAPKAAPKKAAPKVVAAAPKPQGNINNLPKAL*
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mRNA from alignment at Ecto-sp8_S_contig10288:1793..6483+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10288.480.1 ID=mRNA_Ecto-sp8_S_contig10288.480.1|Name=mRNA_Ecto-sp8_S_contig10288.480.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4691bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10288:1793..6483+ (Ectocarpus species8 EcLAC_412)
ATGAAGACCGCCGCACTCTCCCTCGTTGCGTTGACTTGCTCGTGCGCGAA
TGCCTTCACGGTGTCCCCCGCTGCACTGAGGTGAGTCGTCAGCAGAGCAC
ATGAATGATGAGCGAAAAACGCGACAACGTCACTCGTTTGAGGGAAGTCC
TACCAGAACGGGAGAGAGAACACCGCACGGCAGTGCCCTGCTCGGCGGGG
CGGGTTGCGTCGCAGCTCGCCGATGGTCGTTCGCGTGCGGTCTCTCTCAC
GTGCCGTGGTGTGTCTGGGCACACGGTAGGCCGATCACATTCAGTAGCGA
AGACATGTGTGTTCACCCCTCATCTCTCTAAACGTATCTTCTGCTTAGTC
AACTTTCAACTCCTGAGAGATAGGGGCGAACGGTCCCCTTGCGTGTGTCA
GATGCAGCGGCCCCATCCCCCTCCTCCGCCCGGTAAATCACGAGAGAGAC
ACTGTGGTAGCGCTGGGTGCGTTGATTTCGATGGCTCGCTGGCCCGTTTC
CGACAGCGCGCCTAAGTTGATGTGCGGATCATCTTCCGAGTTGGGTGGAG
TAAGCCTGTCGTTGAATAACACCCCCACTAACTGCTGTCTGCACCACTGA
CTGACACCGAACACATGATTCTTTGTTTTGAGCTGTCAAGCGCTGGATGC
TGTTAGACTATTTAGCATGCGGTTGTGGATTTCAGCTCTCGGAACACGAA
ATCCGGTTTAGATGAGTGCATGGCTGCTGCAAACTGTTTGTACAGCACAC
CCGAATGCTTGTGCCACAGACAGCTGTAGCAACGCAGCACCCCCGACACA
GCAGTCATGCCCCCAAACATGCTCATCAGGCATCAATCATATCTAGATGT
ACATGAAAAAATGAAAAAGCGTTACGATCTCTTCAGTGGTATTGTATCCT
TCTATGCATAGTCTAACACCCGTACTGATGGAACTGAGGCGTGAGGATCA
ATATTGTTCAACTTATTGCTGTCAGGGATCCCTAATCCCTGCGCCGAAGC
GGTTATTGGTGTACGTCGTAGCCGGCGCAGACTACAAATCTACAGCAGTC
TAGCCTGCAAGGATACCTTACTGAGTATGAAATCAGCACAAGGGTATCTA
TGTTAGAGTCACAGATTGAAGATAAAAGATGGGAGATAAACCGCAACCAC
GCACATCGGGAACCCGATGACTGCCTAGAAGAAGGTGTTTTCGCATATTT
TTTTTTTGCGTGGTTTCGTTGGCCAACCGGGTGGATACCAACCATAAAAA
AAAGAAACACACAGGCAGTCAGATGTCTCAGATCATGGAACGTTGTCGGG
GCAAACCAGCTTCCACCAATCTGTGGTAGCCCGTTGTTCTATGCTCAGCA
AAATGCGGTGTACCTGCACGACGCGAAATACTGCAGCCTTGGAGGTTCAT
TGAACTGGGTAGTGAGGGAGGAACTGAATCATGGACGAGCTGTAGATGTG
TGCAGCCTTGCGGTACTCTACTACATACCTCGCCATCCAGAACAGAATGA
GCCCCGGAACGACGTACGAAGTTGGATTTTCGCGGAACAGAAAGGGGAGA
AACATCATATGGCAGCAAAGATATCGGGTATCGGGTATCTTCCTTCTTAT
GTAGTTGTACAGCACCCCGCTAGATAACTGGACACCTGTAACCGAGAACT
CTCGTGCGGTCGGAAGATTTTTTCGAACAATAGCATTTTCCCCCGAAGCA
TCTTCCTGTGTCTCTTCATGATGCTGCTTCTTTTGCTGGCGTTATCCTCC
TAATATCCCCCTCCCCCCCCCCCGCGCTCAACATCGCGCACATCCAGGAC
GCAAGCGCGCGGCCGCAGCAACACCGCCACATCAAGCACATCTCTGCGCA
TGGGGTGGTCGCTCAAGGAGGCGGACTTCATCCCCTCCGAAGAATGGCTG
GGCGAGTACTTGGGGGAGCAAGGGCTGCGCTACAGGATGGACAAGACGGA
GAAGGAAGTCGCGGAGGAGGGTGAGTGCGTTGCAAAAAGGGTTGTTGAAG
CTTTGGCCCTGTAGAGCAAGTGTTCTGGTGGTGCGCTGTACGATCGGGGT
GGTGTGTTTTTTGTGGGTGTGCATGTAGTTGTCTTGGCATTGGCGCCCGT
CCTCGATTCAGCACCCTCACGCGCCATCAAGAGCCGGGTGCCGTGATGTC
ATGCTCGAACGAGTAAACCAGTATGAGCCTCAGATATGTATAGAATGGCA
CATCTGGGCACGAAAGCTGTTCAGAACATGCGCCCGCTCCTGCTGTAGTC
CAAAGGGTATGAAATGGAACTATAACGTTTTATAATAGCCTCCCAAAAGG
AGGGGCAGGCCTCGGCAGTCAATGAAGCAAAGCTTCAGCTTGAGACCATG
TCGGGGAGTTTTGAGTATCTGGTGCTTTTTTTGCGGTAGTTGGGTCGGGT
CCAAACGAACATTGGAGATCGGTGTTCAAGCTGGGCAGCTGACCATGGCA
AGGGACGTGGGCGATTTCAGGGCAGCGTTTTCGAGCCAAAGACGGTCCTT
CTGTCATCGGCTCCTGGCTGCCACGTTCCATCTGCTGTTGCTTGACTTAT
TCGTTGGAACGTCGTTCGTGTGCAACGTACATATTTCAGTTCGCGAAAGG
CAGAAGAGTGTCTGCGGATGCCTGCGCGAATAATTCTCGTTTCTTCGCCT
TCATCGTCGTTGCTGTTGTCACGTTGCGGCGCAACTGCGCTGTTGTTTCC
TTCTCCCGCAGGTGACTACACACTGCTTGAGAAGATCTTCGGACAGACCT
CAAACAACGCGGAGCGCATGAAGTTGAAAGCGGAGGTGCTGGCCAAGGCC
GACATCCCCACTAACCCCTCTCTTGTGAGTAACCGCCATTTTCGGGGTGA
TGGGGGCATCGATCGTCATCGTTGTCGGGTGTTTGTTCCTTTCCGTGTGC
ATGTTAACTTTTTTTTTATGGTAATAAGGGTGGTGTGGTGGCGGTTGTTG
TTGCCACCCTGGTGGTGGTTGCCCCTCATTTTTCTAAACTTGGTGGACTT
GACTACTTGCCCGCGCTCCGGACATATCCCTCACCTGGTGAATGATCGCA
GTAAGATCAATTTCAAGAGGTAGATGAGTGGGGCGAGATGGGCTACCGCA
TGTTGAACGAGATACACACTCCATGGACATATGTATGCTTTTCGGAATGT
CCACGACGGGTACTCGCGTGTGCGGCAAGTTTTGGCTTGAAAAGCATGTC
ATCATTTCCCCACACTTCTAATTATTTAGCGCTCACAGATCGGCTTGTTT
TCTCCGTTTCCAACCTTGAATCCGCGGTCGACCAACCCAACCCTTGCCGT
AATCCTCTCGCTACTCGCGTCGCAGTACAAGACGTGGACCGAGAAGTACG
GCTACGGAAGGTTTTTCCCCGTGTACGTAGACAAGTCGGGTTTGTCGGAC
GACACCCCCGCGCCGGCCAAGGCCTCAAAGACGGTGAGATCTCGTTGTGA
CTTTTTTTTTTGTCAAAAGCACGAGTTCTTTTACAAGCTGTTGGTGGCGG
CCGCTGCACTAGAACACGCTTGGTTGTCGTACTGCTACACGGCTAACTAT
GTATTGACGCATCTTTCTGCTGTAGGTTCGCGGAGCACAACGTTCTTTCT
CCCGTTGCATGGGCGGCTTTTGTTGCAAATAGCAGGAAAAAGCTGTCGAA
TTCATGCGCATCACCCCGGTGTCCGTGGTGGTAGGGATGACTGCGGCGCG
AGGACACTCGTGTCTTGCTTTTTGAACTCTTGACTAGGTTTGGTGCTGTT
GAACTCTAGACTGAGGTTGGTTGCGCGATAATGCGCGCTGCGACACGCGT
AGGCTCCGCGTTGCCAAGAAGCGGAGCAGGTACGAAATGCCGCGGCGTTG
CCAAGAAGAGCTGAATTCGCGGCAGGCACAAGATGTCGCTGTAGGTAGCA
AAGCTCCCATCGAGTGACCCCCCCCCCCCCGCCGTCGGCGTCGTATATGA
ACTCGGTTTCTTTTTCAGGTCGCACCCAAGAAGGCTCCCGCGAAAAAGGC
TGCTGCTAAGGCTGCGCCTAGGGCCGCTGCTGTCAAGGCCTCGTCGAGGC
CCGCTGCTAAGTCCGCACCAAAGGCGAAGGCCGCTCCCAAGAAGGCGGCG
CCAAAGGTAATCATGCCGGCAGTTTCAAGCTGCATGCTGCTGTTTTAGTT
TTCATTTCTCGAGGTCATTGCCTGCCTAAGTCTAGTAACGGGATGTGTCG
GGAGAGACACGACAAAGTACAACAAGCGCGGAGGGGGTTCATCCCCTGGA
GGGAGAGGCTTCTTTCTCAGTGGTGACTACGATGGTGGCGGGGAACATGG
TCTCGACAAAACAGAACAAGGGGAACACAACAGTAATTTTGCTTTTTTGG
CTGCTCTCACGCATGATTCATTTAAACGTATGCGTGTATGATTGCAAGCA
CGTGTGGGGGGACATGGTGTGTTCTGTTTCGCGTGTTCATGCCGCGCTTT
GGCCCGTGTACATGTATACGCAACGAAAACACGCCAGTGTTGCCTGGAAG
AGCGATGGCTACGCCCTCTCTCGGATTATCAAAGTCAGACGTTTTCTCGT
GTTCGTTGCCCGCTAATCGCTGCGTGTGCTCTTTTGTGCTCTTCTTCTTA
TCAGGCTGCTCCTAAGAAGGCCGCCCCCAAGGTTGTCGCGGCAGCCCCCA
AGCCCCAGGGCAACATCAACAACCTGCCCAAGGCTCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10288:1793..6483+

>mRNA_Ecto-sp8_S_contig10288.480.1 ID=mRNA_Ecto-sp8_S_contig10288.480.1|Name=mRNA_Ecto-sp8_S_contig10288.480.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10288:1793..6483+ (Ectocarpus species8 EcLAC_412)
ATGAAGACCGCCGCACTCTCCCTCGTTGCGTTGACTTGCTCGTGCGCGAA
TGCCTTCACGGTGTCCCCCGCTGCACTGAGGACGCAAGCGCGCGGCCGCA
GCAACACCGCCACATCAAGCACATCTCTGCGCATGGGGTGGTCGCTCAAG
GAGGCGGACTTCATCCCCTCCGAAGAATGGCTGGGCGAGTACTTGGGGGA
GCAAGGGCTGCGCTACAGGATGGACAAGACGGAGAAGGAAGTCGCGGAGG
AGGGTGACTACACACTGCTTGAGAAGATCTTCGGACAGACCTCAAACAAC
GCGGAGCGCATGAAGTTGAAAGCGGAGGTGCTGGCCAAGGCCGACATCCC
CACTAACCCCTCTCTTTACAAGACGTGGACCGAGAAGTACGGCTACGGAA
GGTTTTTCCCCGTGTACGTAGACAAGTCGGGTTTGTCGGACGACACCCCC
GCGCCGGCCAAGGCCTCAAAGACGGTCGCACCCAAGAAGGCTCCCGCGAA
AAAGGCTGCTGCTAAGGCTGCGCCTAGGGCCGCTGCTGTCAAGGCCTCGT
CGAGGCCCGCTGCTAAGTCCGCACCAAAGGCGAAGGCCGCTCCCAAGAAG
GCGGCGCCAAAGGCTGCTCCTAAGAAGGCCGCCCCCAAGGTTGTCGCGGC
AGCCCCCAAGCCCCAGGGCAACATCAACAACCTGCCCAAGGCTCTTTGA
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